Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 0.0e+00 1440.6 843 100.0
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 0.0e+00 1215.3 844 84.8
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 0.0e+00 1114.4 843 77.7
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 1.7e-277 959.5 844 70.1
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 2.9e-261 905.6 849 68.2
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.4e-260 903.3 849 68.0
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.0e-254 882.9 849 66.8
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.3e-250 870.2 874 65.3
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 3.7e-216 755.7 837 55.4
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 1.5e-214 750.4 824 58.9
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 6.5e-213 745.0 827 58.2
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 3.2e-212 742.7 827 58.0
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 1.2e-211 740.7 900 52.0
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 2.7e-211 739.6 847 58.8
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.0e-210 737.6 838 56.2
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.5e-209 733.8 837 56.2
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 2.0e-206 723.4 849 57.8
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 9.4e-204 714.5 829 56.1
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 2.7e-203 713.0 852 54.9
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 1.4e-199 700.7 842 54.0
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 5.3e-199 698.7 842 54.3
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 2.2e-197 693.3 842 53.6
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 9.4e-196 688.0 855 51.1
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 1.0e-194 684.5 835 54.4
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 2.6e-193 679.9 836 49.3
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 3.3e-193 679.5 836 54.2
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 7.0e-191 671.8 832 51.7
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 3.5e-190 669.5 849 52.4
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 1.3e-189 667.5 842 53.4
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 6.5e-189 665.2 829 53.3
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 1.5e-188 664.1 820 50.9
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 3.2e-188 662.9 850 54.4
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 1.2e-187 661.0 833 48.9
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 4.7e-187 659.1 853 52.3
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.2e-186 655.6 853 51.6
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 4.4e-185 652.5 835 48.5
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 7.5e-185 651.7 833 54.4
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 5.3e-183 645.6 835 47.1
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 1.6e-182 644.0 846 51.1
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 1.0e-181 641.3 810 55.2
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 6.5e-181 638.6 847 49.8
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 3.7e-176 622.9 785 55.5
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 4.8e-176 622.5 835 46.9
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.1e-175 621.3 832 52.2
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 1.8e-175 620.5 843 51.7
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 1.8e-175 620.5 845 52.1
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 2.4e-175 620.2 832 52.3
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 2.4e-175 620.2 845 50.8
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 4.1e-175 619.4 687 57.9
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.4e-175 619.0 853 50.8
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 9.1e-175 618.2 854 50.9
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.6e-174 617.5 813 51.0
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 7.7e-174 615.1 831 51.7
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 1.9e-172 610.5 852 50.8
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 4.2e-172 609.4 845 50.4
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 2.8e-171 606.7 840 51.9
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 3.6e-171 606.3 821 45.3
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 8.0e-171 605.1 831 49.9
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 4.0e-170 602.8 828 45.9
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 1.2e-169 601.3 814 50.5
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 2.0e-169 600.5 861 46.8
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 2.6e-169 600.1 832 49.9
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 3.4e-169 599.7 828 52.2
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 4.4e-169 599.4 843 45.6
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 3.7e-168 596.3 876 49.5
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 1.8e-167 594.0 811 50.7
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 1.6e-166 590.9 851 50.9
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.2e-163 581.3 878 47.3
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 4.7e-163 579.3 837 51.5
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.4e-162 577.8 817 45.3
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.8e-162 577.4 816 49.1
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 3.1e-162 576.6 809 50.1
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 1.5e-161 574.3 829 49.1
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 2.6e-161 573.5 784 46.7
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 3.2e-159 566.6 809 48.9
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 3.5e-158 563.1 835 48.0
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 1.3e-157 561.2 839 48.3
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.3e-157 561.2 815 48.1
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 1.7e-157 560.8 774 51.2
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 8.6e-157 558.5 822 48.7
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 3.6e-155 553.1 867 48.6
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.8e-154 550.8 817 48.8
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 8.9e-154 548.5 802 49.9
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 2.2e-152 543.9 815 48.3
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 8.3e-152 542.0 708 52.7
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 2.4e-151 540.4 821 47.9
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 4.1e-151 539.7 509 57.8
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 6.0e-150 535.8 810 48.4
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 1.0e-149 535.0 825 48.0
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.3e-149 534.6 692 54.2
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 2.3e-149 533.9 817 50.3
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 5.1e-149 532.7 810 48.4
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 1.5e-148 531.2 811 48.8
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 6.2e-147 525.8 811 48.6
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 1.4e-146 524.6 821 49.1
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.2e-145 521.5 829 47.3
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 6.4e-144 515.8 833 43.7
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 2.7e-142 510.4 803 47.4
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 1.1e-130 471.9 739 48.4
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 5.3e-130 469.5 824 46.2
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 5.1e-117 426.4 874 41.1
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 5.1e-117 426.4 882 40.1
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 1.6e-115 421.4 877 40.6
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 4.5e-113 413.3 879 38.7
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 1.7e-112 411.4 814 44.5
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.9e-111 407.9 774 44.1
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 4.6e-110 403.3 492 50.4
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 8.2e-91 339.3 890 38.4
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 2.4e-90 337.8 835 35.3
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 5.1e-85 320.1 611 45.7
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 1.8e-77 295.0 513 40.7
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 1.8e-77 295.0 575 36.0
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 3.7e-75 287.3 510 40.4
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.2e-60 239.2 258 51.6
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.2e-54 219.2 470 36.0
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 2.6e-52 211.5 834 26.5
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 2.3e-45 188.3 833 27.9
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.0e-44 185.3 198 58.6
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 1.1e-39 169.5 703 35.0
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 6.2e-38 163.7 180 47.8
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.1e-37 162.9 115 67.0
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 2.9e-35 154.8 384 33.1
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 8.3e-35 153.3 251 38.6
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 4.1e-34 151.0 452 30.5
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 3.7e-27 127.9 197 39.1
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 2.2e-19 102.1 160 38.1
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 1.4e-18 99.4 179 39.1
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 6.0e-17 94.0 82 53.7
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 5.3e-13 80.9 80 53.8
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 2.1e-09 68.9 47 66.0
Ah.06g195260 Amaranthus hybridus HOM05D005855 ORTHO05D006406 3.0e-08 65.1 111 36.9
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 2.1e-06 58.9 104 36.5
Ah.06g195240 Amaranthus hybridus HOM05D000941 ORTHO05D000882 3.6e-06 58.2 82 42.7
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 6.2e-06 57.4 154 36.4
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 6.2e-06 57.4 61 50.8


User provided reference genes

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