Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 4.5e-120 434.5 201 100.0
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.1e-107 393.3 200 90.0
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 3.0e-100 368.6 199 84.4
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 5.7e-99 364.4 199 79.9
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 7.4e-99 364.0 199 81.4
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.3e-98 363.2 200 81.5
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.3e-98 363.2 199 80.9
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.7e-98 362.8 199 81.9
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 2.2e-98 362.5 199 81.9
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 2.2e-98 362.5 199 81.4
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 8.2e-98 360.5 196 80.6
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 9.1e-97 357.1 199 82.4
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.2e-96 356.7 199 81.4
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 3.4e-96 355.1 195 82.6
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 7.7e-96 354.0 199 79.4
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.0e-95 353.6 199 77.9
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.7e-95 352.8 199 77.9
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 2.9e-95 352.1 199 78.9
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 2.9e-95 352.1 199 78.9
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 5.0e-95 351.3 199 78.9
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 5.0e-95 351.3 199 78.9
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 6.5e-95 350.9 199 78.9
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 8.5e-95 350.5 197 78.2
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.4e-94 349.7 199 78.4
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 3.2e-94 348.6 199 78.4
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 4.2e-94 348.2 196 76.5
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 1.2e-93 346.7 199 79.4
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 2.1e-93 345.9 196 78.1
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.7e-93 344.7 199 76.9
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 7.9e-93 344.0 195 76.9
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 7.9e-93 344.0 200 79.0
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 1.0e-92 343.6 199 76.9
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.4e-92 343.2 200 79.0
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.8e-92 342.8 199 75.4
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 3.9e-92 341.7 199 76.4
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.1e-92 341.3 200 78.5
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 6.7e-92 340.9 199 75.4
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 8.8e-92 340.5 200 78.0
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.5e-91 339.7 200 78.0
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 2.0e-91 339.3 194 78.4
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 3.3e-91 338.6 199 76.4
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.4e-91 338.2 199 75.9
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.7e-91 337.8 194 78.4
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 5.7e-91 337.8 199 76.4
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.2e-90 335.9 199 76.4
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 2.2e-90 335.9 199 75.4
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 6.3e-90 334.3 199 74.9
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.8e-89 332.8 199 75.9
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.4e-89 332.4 194 75.8
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.1e-89 332.0 196 75.0
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 5.3e-89 331.3 199 73.4
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 7.0e-89 330.9 199 75.9
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 7.0e-89 330.9 194 74.7
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 9.1e-89 330.5 194 74.7
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.2e-88 330.1 194 75.8
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 2.0e-88 329.3 194 73.7
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 3.4e-88 328.6 195 75.4
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 5.9e-88 327.8 199 73.9
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 5.9e-88 327.8 194 74.2
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 7.7e-88 327.4 194 75.8
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 7.7e-88 327.4 194 73.2
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 1.3e-87 326.6 199 73.4
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.2e-87 325.9 194 75.8
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 2.2e-87 325.9 194 75.3
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 2.9e-87 325.5 194 73.7
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 3.8e-87 325.1 274 59.1
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 3.8e-87 325.1 194 74.7
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 3.8e-87 325.1 194 74.7
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 6.5e-87 324.3 193 73.6
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.1e-86 323.6 200 72.5
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.1e-86 323.6 194 73.7
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.1e-86 323.6 194 73.7
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 1.4e-86 323.2 199 71.4
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.4e-86 323.2 191 73.8
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.9e-86 322.8 194 74.7
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.9e-86 322.8 253 60.5
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.9e-86 322.8 200 71.0
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 2.5e-86 322.4 199 72.4
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 3.2e-86 322.0 199 73.9
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 9.4e-86 320.5 193 74.1
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 9.4e-86 320.5 200 70.5
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.6e-85 319.7 194 73.7
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.1e-85 319.3 191 74.9
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 2.7e-85 318.9 194 71.6
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 3.6e-85 318.5 200 71.0
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 3.6e-85 318.5 200 70.0
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 6.1e-85 317.8 200 70.5
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 6.1e-85 317.8 200 71.0
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 6.1e-85 317.8 200 70.5
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.4e-84 316.6 200 70.0
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.0e-84 315.5 199 72.9
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 5.2e-84 314.7 200 70.5
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 5.2e-84 314.7 200 70.5
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 6.7e-84 314.3 200 69.0
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 6.7e-84 314.3 200 70.0
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.1e-83 313.5 200 69.5
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.1e-83 313.5 200 69.0
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.5e-83 313.2 194 72.2
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 4.4e-83 311.6 197 75.1
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 9.7e-83 310.5 200 71.0
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.3e-82 310.1 200 69.0
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.3e-82 310.1 200 68.5
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.3e-82 310.1 200 68.5
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.3e-82 310.1 200 68.5
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.8e-82 308.9 200 68.5
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.8e-82 308.9 200 68.0
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 4.8e-82 308.1 200 68.0
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 8.2e-82 307.4 200 68.0
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.8e-81 306.2 200 69.0
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 5.3e-81 304.7 200 68.5
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.0e-80 302.8 200 67.5
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.3e-79 300.1 198 71.7
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.2e-77 293.5 199 68.3
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.0e-76 290.4 203 67.5
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 6.7e-76 287.7 199 66.8
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.5e-75 286.6 204 66.7
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 5.7e-75 284.6 194 68.0
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 7.5e-75 284.3 194 66.0
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 2.7e-72 275.8 194 66.5
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 2.5e-70 269.2 194 63.4
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.5e-67 260.0 264 51.1
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 7.5e-67 257.7 194 63.4
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 5.4e-65 251.5 150 75.3
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 7.0e-65 251.1 199 58.3
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 2.0e-64 249.6 198 61.6
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 1.7e-63 246.5 148 75.0
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.4e-60 236.9 194 59.8
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.3e-60 236.1 153 66.7
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 1.7e-58 229.9 125 79.2
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.1e-57 227.3 148 72.3
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 5.0e-47 191.8 138 66.7
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.9e-42 176.0 178 47.2
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 3.9e-39 165.6 111 66.7
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.5e-38 162.9 184 45.7
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 3.6e-37 159.1 132 58.3
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 5.2e-36 155.2 81 85.2
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.3e-31 140.6 123 55.3
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.1e-30 137.5 83 74.7
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.5e-30 136.3 72 86.1
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.6e-29 133.7 79 78.5
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 8.9e-28 127.9 73 80.8
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 4.9e-26 122.1 65 80.0
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 3.2e-25 119.4 80 66.2
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.0e-23 114.4 70 72.9
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 2.1e-21 106.7 80 60.0
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 4.9e-18 95.5 62 71.0
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.5e-16 89.4 71 60.6
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.7e-15 87.0 49 75.5
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.1e-14 84.3 47 74.5
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 2.5e-14 83.2 46 76.1
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 5.6e-14 82.0 44 77.3
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.8e-12 77.0 44 72.7
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.6e-08 63.9 50 56.0
Sabra07G0047000 Salix brachista HOM05D004306 ORTHO05D005055 4.6e-08 62.4 86 46.5
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 7.9e-08 61.6 36 75.0
Lalb_Chr05g0225981 Lupinus albus HOM05D004306 ORTHO05D005055 5.6e-06 55.5 53 52.8


User provided reference genes

Program Settings