Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1909.8 992 100.0
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1720.3 1008 87.9
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 0.0e+00 1557.7 1016 79.1
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1324.3 996 70.5
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1310.0 975 71.5
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1281.9 965 70.5
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1273.1 1024 69.4
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1271.9 1027 67.3
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1256.5 970 68.6
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1255.7 970 68.6
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 0.0e+00 1254.2 965 68.9
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1249.2 936 70.8
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 0.0e+00 1248.8 1021 66.4
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1247.3 1039 65.6
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1241.9 967 68.5
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 0.0e+00 1239.6 1037 66.3
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 0.0e+00 1239.2 976 68.2
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1236.9 965 67.9
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1234.9 970 67.3
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 0.0e+00 1229.5 1023 65.2
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 0.0e+00 1220.3 965 66.6
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 0.0e+00 1218.4 951 67.5
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1216.4 963 69.2
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 0.0e+00 1215.7 1018 64.2
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 0.0e+00 1209.5 959 66.8
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 0.0e+00 1208.4 1014 63.6
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1194.1 957 65.9
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1186.0 951 65.4
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1184.1 975 65.1
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1184.1 975 65.1
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 0.0e+00 1182.2 981 64.8
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 0.0e+00 1179.9 973 65.0
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1176.4 979 63.6
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 0.0e+00 1163.7 1002 62.4
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 0.0e+00 1159.8 956 64.3
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 0.0e+00 1159.1 953 65.5
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1155.2 954 63.7
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 0.0e+00 1154.4 1033 62.7
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1142.5 978 64.0
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 0.0e+00 1128.6 965 63.1
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 0.0e+00 1127.1 1023 61.5
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 0.0e+00 1121.7 940 63.0
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 0.0e+00 1120.9 982 64.1
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 0.0e+00 1102.8 961 62.1
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1100.5 948 61.3
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 0.0e+00 1095.5 968 61.6
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 0.0e+00 1089.3 988 59.3
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 0.0e+00 1088.6 963 60.5
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 0.0e+00 1087.0 966 62.6
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 0.0e+00 1075.5 981 59.6
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 5.0e-305 1051.2 955 59.6
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.0e-302 1043.5 996 58.8
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.4e-302 1043.1 930 60.5
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 5.1e-302 1041.2 930 60.5
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 8.8e-302 1040.4 859 63.6
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 2.6e-301 1038.9 979 57.8
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 1.7e-300 1036.2 982 59.5
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 5.3e-299 1031.2 990 58.3
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 1.3e-297 1026.5 923 60.7
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 5.5e-296 1021.1 971 58.6
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 6.1e-295 1017.7 1019 57.8
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 8.8e-294 1013.8 945 59.6
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 7.4e-293 1010.7 822 61.9
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 1.3e-292 1010.0 999 57.5
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 8.2e-292 1007.3 970 56.0
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 3.5e-290 1001.9 985 57.2
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 3.8e-289 998.4 973 57.1
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 6.5e-289 997.7 994 55.5
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 2.1e-287 992.6 990 57.4
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 3.0e-286 988.8 970 56.8
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 5.2e-286 988.0 975 58.8
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 5.5e-280 968.0 994 53.9
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 9.4e-280 967.2 683 71.2
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 1.2e-277 960.3 846 62.1
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.7e-276 956.4 771 64.6
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 3.4e-269 932.2 850 57.5
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 1.1e-264 917.1 994 53.6
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 2.5e-264 916.0 1001 53.2
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 3.6e-263 912.1 991 52.8
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 3.6e-263 912.1 991 52.8
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 5.2e-262 908.3 992 52.8
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 4.4e-261 905.2 849 57.8
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 1.1e-259 900.6 996 52.1
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 1.1e-259 900.6 996 52.3
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 8.6e-257 891.0 990 53.1
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 1.9e-256 889.8 990 53.0
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 1.2e-255 887.1 994 52.0
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 5.2e-254 881.7 973 53.5
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 1.7e-252 876.7 1006 50.4
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 2.1e-250 869.8 990 51.7
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 2.7e-250 869.4 997 52.6
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 3.9e-249 865.5 992 51.2
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 3.3e-248 862.4 998 51.2
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 3.3e-248 862.4 990 51.4
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 1.2e-242 844.0 816 52.3
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 3.0e-241 839.3 783 57.1
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 3.2e-235 819.3 759 58.4
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 5.4e-235 818.5 990 49.9
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 1.7e-228 797.0 974 47.6
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.3e-225 787.3 532 72.4
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 6.9e-222 775.0 540 69.8
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.1e-218 763.5 533 69.2
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 3.1e-206 723.0 593 59.2
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 3.1e-206 723.0 628 59.7
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 2.3e-161 573.9 383 73.9
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 4.7e-154 549.7 686 50.0
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.2e-141 508.4 473 53.3
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 1.3e-132 478.4 474 60.1
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 6.6e-124 449.5 408 55.4
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.9e-102 378.3 423 57.7
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 3.0e-84 317.8 481 43.5
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 9.4e-70 269.6 316 46.5
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.4e-60 239.2 734 28.9
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.0e-51 208.8 344 35.8
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.4e-49 202.6 130 78.5
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.7e-47 195.7 382 33.0
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.2e-47 195.3 457 31.1
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.2e-47 195.3 457 31.1
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 6.5e-47 193.7 382 33.2
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.9e-38 165.6 188 51.1
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.1e-37 162.2 393 29.3
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 5.0e-31 141.0 397 30.5
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.3e-30 137.9 319 31.3
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.3e-15 89.7 302 25.8
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.3e-15 89.7 301 25.6
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 8.6e-15 87.0 117 45.3
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.9e-14 85.9 154 35.7
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 9.5e-14 83.6 56 71.4
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 4.9e-10 71.2 354 24.0
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 1.6e-08 66.2 64 64.1
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.7e-08 65.5 470 23.0
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 1.0e-07 63.5 86 37.2
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.3e-07 63.2 295 23.4
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 2.3e-07 62.4 89 34.8
MD13G1130000 Malus domestica HOM05D002537 ORTHO05D002751 8.6e-07 60.5 144 28.5
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 2.5e-06 58.9 72 40.3
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 2.5e-06 58.9 78 39.7
Nn4g24804 Nelumbo nucifera HOM05D003725 ORTHO05D004294 3.3e-06 58.5 79 35.4
AagrBONN_evm.TU.Sc2ySwM_117.2665 Anthoceros agrestis HOM05D003725 ORTHO05D004294 4.3e-06 58.2 135 28.9
Aqoxy1G00445 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 4.3e-06 58.2 164 25.6
Oeu063117.1 Olea europaea HOM05D003725 ORTHO05D004294 4.3e-06 58.2 124 29.0
SMO116G0125 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 4.3e-06 58.2 299 22.1
Sed0027950 Sechium edule HOM05D002537 ORTHO05D002751 5.6e-06 57.8 78 37.2
SMO367G0451 Selaginella moellendorffii HOM05D003725 ORTHO05D004294 5.6e-06 57.8 164 27.4
Solyc02g030460.2 Solanum lycopersicum HOM05D003725 ORTHO05D004294 7.3e-06 57.4 89 34.8
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 9.6e-06 57.0 117 30.8
RhsimUnG0101800 Rhododendron simsii HOM05D002537 ORTHO05D002751 9.6e-06 57.0 69 36.2
Sopen02g009780 Solanum pennellii HOM05D003725 ORTHO05D004294 9.6e-06 57.0 89 33.7


User provided reference genes

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