Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 2.4e-198 695.3 349 100.0
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 4.1e-145 518.5 293 90.8
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 1.1e-134 483.8 293 84.3
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 3.3e-118 429.1 295 73.6
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 6.1e-117 424.9 291 73.9
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 2.3e-116 422.9 291 73.5
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 2.6e-115 419.5 291 72.9
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 3.3e-110 402.5 296 69.6
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 2.3e-103 379.8 293 65.9
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 6.2e-101 371.7 292 66.1
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 1.1e-100 370.9 300 65.3
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 7.5e-99 364.8 289 63.0
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 6.4e-98 361.7 290 62.8
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 8.3e-98 361.3 281 65.1
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 8.3e-98 361.3 289 64.4
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 5.1e-95 352.1 290 62.4
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 4.3e-94 349.0 269 63.6
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 7.3e-94 348.2 276 64.1
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 1.2e-93 347.4 289 61.9
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 4.7e-93 345.5 302 60.9
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 1.1e-92 344.4 302 60.3
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.1e-92 344.4 272 64.3
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 3.1e-92 342.8 311 58.5
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 3.1e-92 342.8 311 58.5
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 4.0e-92 342.4 285 61.1
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 8.9e-92 341.3 289 60.6
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 2.6e-91 339.7 286 61.2
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 3.4e-91 339.3 271 63.8
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 4.4e-91 339.0 269 64.3
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 4.4e-91 339.0 292 60.3
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 5.8e-91 338.6 286 60.8
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 2.2e-90 336.7 286 59.8
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 8.4e-90 334.7 293 58.7
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 1.4e-89 334.0 292 58.6
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 2.4e-89 333.2 276 63.4
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 3.2e-89 332.8 276 62.0
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 3.9e-87 325.9 275 60.7
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 5.1e-87 325.5 293 56.3
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 6.6e-87 325.1 302 56.3
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 8.6e-87 324.7 302 56.3
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 5.6e-86 322.0 298 55.7
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 9.6e-86 321.2 287 57.8
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.6e-85 320.5 287 57.5
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 2.1e-85 320.1 220 67.7
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 8.1e-85 318.2 218 73.4
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 1.4e-84 317.4 258 62.0
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 1.8e-84 317.0 227 69.2
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 3.1e-84 316.2 292 55.5
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 9.9e-83 311.2 355 49.0
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 3.8e-82 309.3 292 54.1
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 8.4e-82 308.1 299 53.5
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 8.4e-82 308.1 299 53.5
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 1.1e-81 307.8 287 55.1
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 1.9e-81 307.0 257 58.8
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 3.5e-80 302.8 279 55.6
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.3e-79 300.8 189 80.4
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 2.3e-79 300.1 282 54.3
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 7.3e-78 295.0 295 52.9
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 9.6e-78 294.7 278 56.1
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 9.6e-78 294.7 306 51.6
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 1.3e-77 294.3 278 56.8
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.1e-77 293.5 249 60.2
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 2.8e-77 293.1 287 53.0
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 3.6e-77 292.7 279 55.2
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 8.1e-77 291.6 283 54.4
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 1.4e-76 290.8 297 54.5
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 6.9e-76 288.5 293 51.2
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 9.9e-75 284.6 292 51.7
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 2.2e-74 283.5 260 55.4
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 2.9e-74 283.1 294 51.0
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 3.8e-74 282.7 295 50.8
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 1.1e-73 281.2 297 51.5
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 1.1e-73 281.2 289 50.5
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 1.4e-73 280.8 299 49.8
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 1.9e-73 280.4 299 49.5
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 3.2e-73 279.6 308 48.7
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 3.2e-73 279.6 300 48.7
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 4.2e-73 279.3 306 49.0
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 7.1e-73 278.5 244 58.6
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 1.2e-72 277.7 299 49.8
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 7.9e-72 275.0 292 50.3
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 1.0e-71 274.6 290 53.4
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 5.1e-71 272.3 301 48.5
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 5.1e-71 272.3 301 48.5
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 1.5e-70 270.8 302 48.7
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 1.5e-70 270.8 302 48.7
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 3.3e-70 269.6 279 50.5
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 3.3e-70 269.6 312 46.5
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 5.6e-70 268.9 298 49.0
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 1.6e-69 267.3 206 68.0
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 1.1e-68 264.6 263 52.5
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.2e-67 261.2 197 67.0
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 1.5e-67 260.8 302 50.0
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 2.0e-67 260.4 293 48.5
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 9.9e-67 258.1 213 62.4
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 2.7e-64 250.0 216 59.3
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 3.9e-63 246.1 389 39.3
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 5.1e-63 245.7 302 46.0
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 8.7e-63 245.0 245 50.6
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 1.5e-62 244.2 269 50.2
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 4.3e-62 242.7 229 54.1
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 4.3e-62 242.7 224 58.0
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 1.3e-61 241.1 217 55.3
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 1.8e-60 237.3 301 42.5
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 1.8e-60 237.3 178 66.3
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 1.2e-59 234.6 306 45.1
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 2.5e-57 226.9 265 47.5
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 1.8e-55 220.7 196 57.7
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 2.3e-55 220.3 274 46.7
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 4.1e-52 209.5 293 42.3
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 4.1e-52 209.5 179 57.0
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 6.5e-50 202.2 289 41.9
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 4.2e-49 199.5 220 45.9
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 1.0e-47 194.9 169 56.8
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 4.5e-43 179.5 178 50.0
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 7.2e-41 172.2 239 43.9
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 4.1e-36 156.4 185 44.3
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 9.1e-36 155.2 140 57.9
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 2.3e-31 140.6 82 74.4
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 2.1e-24 117.5 229 34.1
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 3.3e-22 110.2 237 31.2
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 2.8e-21 107.1 111 50.5
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 1.2e-19 101.7 166 46.4
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 2.3e-15 87.4 127 37.8
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 5.4e-12 76.3 182 29.1
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 4.5e-11 73.2 40 75.0
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 5.9e-11 72.8 44 72.7
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 1.7e-10 71.2 108 33.3
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 2.3e-10 70.9 50 60.0
FAN04G1739 Fragaria x ananassa HOM05D005964 ORTHO05D007242 8.9e-07 58.9 61 65.6


User provided reference genes

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