Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 0.0e+00 1414.1 702 100.0
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 6.5e-275 950.7 721 65.5
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 6.5e-267 924.1 691 64.1
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 8.5e-267 923.7 692 64.7
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 4.8e-262 907.9 691 63.5
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 4.5e-260 901.4 694 62.1
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-259 899.8 690 63.9
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 1.1e-258 896.7 695 63.2
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 3.2e-258 895.2 690 63.3
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 5.5e-258 894.4 690 63.2
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 9.4e-258 893.6 690 62.9
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 1.6e-257 892.9 695 62.7
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 2.1e-257 892.5 690 62.8
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 2.7e-257 892.1 690 63.0
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 6.1e-257 891.0 690 62.9
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 7.9e-257 890.6 690 63.2
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 1.0e-256 890.2 690 63.0
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 1.0e-256 890.2 690 61.9
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 1.4e-256 889.8 690 63.0
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 1.8e-256 889.4 690 62.8
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 3.9e-256 888.3 690 62.5
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 3.9e-256 888.3 691 62.7
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 5.2e-256 887.9 690 62.6
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 5.2e-256 887.9 690 62.6
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 5.2e-256 887.9 690 62.9
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 6.7e-256 887.5 690 62.9
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 8.8e-256 887.1 690 62.8
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 1.1e-255 886.7 690 62.6
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 1.5e-255 886.3 690 62.6
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 1.5e-255 886.3 690 62.3
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 1.5e-255 886.3 691 62.2
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 1.5e-255 886.3 691 62.1
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 2.0e-255 885.9 690 62.8
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 2.0e-255 885.9 690 62.8
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.0e-255 885.9 690 62.6
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 2.0e-255 885.9 690 62.6
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 2.6e-255 885.6 690 62.6
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 2.6e-255 885.6 690 62.2
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 4.4e-255 884.8 691 62.1
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 4.4e-255 884.8 690 62.6
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 5.7e-255 884.4 690 62.9
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 5.7e-255 884.4 690 61.9
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 7.4e-255 884.0 690 62.5
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 7.4e-255 884.0 690 61.6
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 9.7e-255 883.6 690 62.8
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 1.7e-254 882.9 690 62.8
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 1.7e-254 882.9 690 62.2
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 2.2e-254 882.5 690 61.7
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 3.7e-254 881.7 690 61.7
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 3.7e-254 881.7 685 62.8
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 3.7e-254 881.7 689 62.3
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 3.7e-254 881.7 690 62.0
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 3.7e-254 881.7 690 62.3
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 3.7e-254 881.7 690 62.2
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 3.7e-254 881.7 690 62.2
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 4.8e-254 881.3 690 62.5
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 6.3e-254 880.9 690 62.2
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 8.2e-254 880.6 690 61.6
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 8.2e-254 880.6 690 62.3
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 1.1e-253 880.2 690 62.5
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 1.4e-253 879.8 711 61.2
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.4e-253 879.8 690 61.0
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 1.4e-253 879.8 690 62.0
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 1.8e-253 879.4 690 61.7
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 1.8e-253 879.4 690 61.7
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 4.1e-253 878.2 690 61.7
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 4.1e-253 878.2 690 61.0
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.1e-253 878.2 690 62.0
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 5.3e-253 877.9 690 62.0
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 5.3e-253 877.9 690 62.0
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 7.0e-253 877.5 691 62.1
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 9.1e-253 877.1 690 61.6
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 9.1e-253 877.1 690 60.9
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.6e-252 876.3 690 60.7
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 1.6e-252 876.3 703 61.2
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.0e-252 875.9 690 60.7
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.0e-252 875.9 690 60.7
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 2.0e-252 875.9 690 61.2
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 2.0e-252 875.9 690 62.0
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 2.6e-252 875.5 690 61.9
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 2.6e-252 875.5 690 61.6
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 4.5e-252 874.8 690 61.9
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 5.9e-252 874.4 690 61.9
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 7.7e-252 874.0 691 62.4
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 7.7e-252 874.0 690 61.2
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.0e-251 873.6 690 61.4
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 1.0e-251 873.6 690 61.9
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 1.3e-251 873.2 691 60.1
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 3.8e-251 871.7 690 61.7
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 5.0e-251 871.3 690 61.4
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 6.5e-251 870.9 690 62.0
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 6.5e-251 870.9 690 61.4
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 8.5e-251 870.5 690 61.2
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 1.1e-250 870.2 689 61.4
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 9.4e-250 867.1 690 60.7
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 2.1e-249 865.9 733 59.2
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 2.7e-249 865.5 690 61.3
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 4.7e-249 864.8 732 59.0
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 8.0e-249 864.0 692 61.4
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 2.0e-247 859.4 701 61.2
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 9.7e-247 857.1 702 60.8
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 1.7e-246 856.3 705 60.0
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 2.2e-246 855.9 702 60.7
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.8e-245 852.8 707 60.1
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 1.8e-245 852.8 690 59.3
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.3e-243 846.7 709 59.9
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 5.0e-243 844.7 737 57.4
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 5.0e-243 844.7 737 57.4
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 3.2e-242 842.0 617 65.5
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 1.2e-241 840.1 690 59.1
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 5.7e-239 831.2 635 65.5
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 1.3e-238 830.1 749 56.2
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 3.7e-238 828.6 659 61.8
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 1.1e-237 827.0 788 54.1
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 3.1e-237 825.5 788 55.6
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 1.2e-236 823.5 663 60.9
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 4.5e-236 821.6 691 58.8
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 1.0e-235 820.5 694 58.6
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 2.9e-235 818.9 690 59.3
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 5.0e-235 818.1 690 59.4
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 1.6e-233 813.1 690 58.4
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 1.0e-232 810.4 690 58.7
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 3.0e-232 808.9 690 58.4
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 6.3e-230 801.2 690 57.5
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 2.3e-224 782.7 625 60.8
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 2.0e-220 769.6 616 61.0
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 1.5e-218 763.5 616 61.0
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 2.6e-215 752.7 706 54.7
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 1.9e-210 736.5 691 53.8
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 3.2e-205 719.2 584 59.8
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.6e-201 706.8 708 53.8
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.4e-200 703.7 695 53.7
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 6.8e-200 701.4 690 52.2
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.2e-196 690.6 528 64.8
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.7e-169 599.4 464 63.4
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 4.1e-144 516.2 502 52.4
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 1.0e-134 485.0 415 57.1
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.2e-126 457.2 422 53.3
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 1.5e-114 417.9 365 55.6
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.4e-104 384.8 273 69.2
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 3.0e-102 377.1 301 64.1
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.0e-102 377.1 310 59.4
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 2.3e-91 340.9 299 59.2
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.1e-91 340.5 280 60.0
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.1e-91 340.5 309 56.0
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 1.2e-82 312.0 349 50.4
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 9.3e-64 249.2 363 42.7
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.9e-62 243.8 218 54.1
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 9.6e-61 239.2 304 43.1
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.8e-59 235.0 183 56.8
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.4e-51 208.0 219 49.3
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-50 205.3 179 59.2
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 7.6e-50 203.0 201 52.2
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.6e-47 195.3 175 52.0
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 7.4e-45 186.4 165 59.4
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 2.7e-31 141.4 165 49.1
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 9.7e-29 132.9 142 49.3
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-28 132.5 101 61.4
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 3.7e-28 131.0 354 30.8
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.0e-25 122.9 160 45.6
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 8.2e-20 103.2 75 64.0
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-18 99.0 105 48.6
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 4.5e-18 97.4 60 65.0
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 1.2e-15 89.4 60 71.7
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.0e-14 86.3 145 36.6
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 3.0e-14 84.7 145 35.9
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 4.4e-13 80.9 110 43.6
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 7.5e-13 80.1 42 81.0
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.3e-12 79.3 161 36.6
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 1.3e-09 69.3 108 41.7
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.1e-08 66.2 131 38.9
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 8.0e-07 60.1 49 65.3


User provided reference genes

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