Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 8.5e-199 696.8 354 100.0
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 6.8e-39 165.6 247 41.7
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 1.2e-38 164.9 245 41.2
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.2e-38 164.9 251 40.6
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.5e-38 164.5 248 40.3
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 2.6e-38 163.7 245 40.4
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 2.6e-38 163.7 251 39.0
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 3.4e-38 163.3 245 40.8
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 5.8e-38 162.5 245 40.8
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 5.8e-38 162.5 245 40.8
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.8e-38 162.5 318 36.8
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.3e-37 161.4 245 40.4
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 1.7e-37 161.0 245 39.6
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 2.9e-37 160.2 290 38.6
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.9e-37 160.2 313 36.1
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 2.9e-37 160.2 246 41.9
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 6.4e-37 159.1 254 38.6
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 8.3e-37 158.7 320 35.3
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 8.3e-37 158.7 245 40.0
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.1e-36 158.3 249 40.2
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 3.2e-36 156.8 247 40.1
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 4.1e-36 156.4 325 36.9
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 4.1e-36 156.4 246 40.7
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 4.1e-36 156.4 308 36.7
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 9.2e-36 155.2 323 35.9
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 9.2e-36 155.2 248 39.9
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 9.2e-36 155.2 252 39.3
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.6e-35 154.5 329 35.9
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 3.5e-35 153.3 304 36.2
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 3.5e-35 153.3 324 34.6
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 4.6e-35 152.9 325 36.3
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 4.6e-35 152.9 323 33.7
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 4.6e-35 152.9 319 35.4
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 6.0e-35 152.5 329 34.0
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.0e-35 152.5 329 34.0
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 6.0e-35 152.5 253 38.7
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 7.8e-35 152.1 253 39.9
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 7.8e-35 152.1 249 39.8
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 7.8e-35 152.1 273 37.0
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.0e-34 151.8 246 38.6
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.0e-34 151.8 329 35.3
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 1.3e-34 151.4 247 40.5
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 1.3e-34 151.4 306 38.2
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.7e-34 151.0 317 35.3
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.7e-34 151.0 253 38.3
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.7e-34 151.0 253 38.3
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 3.0e-34 150.2 318 34.0
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 3.0e-34 150.2 319 36.4
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 5.1e-34 149.4 246 39.4
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 6.6e-34 149.1 309 35.6
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 8.6e-34 148.7 312 32.7
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 8.6e-34 148.7 315 34.0
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 8.6e-34 148.7 244 38.5
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 8.6e-34 148.7 317 35.3
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 8.6e-34 148.7 248 41.5
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.5e-33 147.9 315 37.1
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 1.5e-33 147.9 225 40.0
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 1.5e-33 147.9 254 38.2
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.5e-33 147.9 211 41.2
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 1.9e-33 147.5 317 35.3
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.9e-33 147.5 319 34.5
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 2.5e-33 147.1 312 32.7
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 3.3e-33 146.7 246 40.2
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.3e-33 146.4 332 33.7
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 5.6e-33 146.0 244 38.9
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 5.6e-33 146.0 260 37.3
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 9.5e-33 145.2 322 32.9
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 1.2e-32 144.8 345 33.3
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 2.8e-32 143.7 195 40.0
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 3.6e-32 143.3 244 37.7
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 4.7e-32 142.9 214 38.3
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 8.1e-32 142.1 262 35.9
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 1.1e-31 141.7 312 32.4
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.1e-31 141.7 283 36.4
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 1.1e-31 141.7 322 33.9
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.4e-31 141.4 269 35.7
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 1.8e-31 141.0 311 35.0
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.8e-31 141.0 320 35.3
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 2.3e-31 140.6 308 33.4
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.3e-31 140.6 246 39.8
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 2.3e-31 140.6 245 39.2
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.1e-31 140.2 310 34.2
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 3.1e-31 140.2 248 37.1
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 6.8e-31 139.0 202 38.1
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 6.8e-31 139.0 245 38.8
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.2e-30 138.3 330 33.9
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.5e-30 137.9 325 34.2
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.4e-30 136.7 311 34.7
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 4.4e-30 136.3 321 32.4
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 4.4e-30 136.3 321 32.4
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 7.5e-30 135.6 311 31.5
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 7.5e-30 135.6 311 31.8
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 9.9e-30 135.2 303 35.0
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 1.3e-29 134.8 330 32.1
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.7e-29 134.4 331 33.2
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 2.2e-29 134.0 238 36.6
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 2.9e-29 133.7 240 36.2
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 2.9e-29 133.7 321 32.1
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 4.9e-29 132.9 334 33.5
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 8.3e-29 132.1 260 35.4
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.1e-28 131.7 196 39.3
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.1e-28 131.7 196 39.3
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.1e-28 131.7 240 35.4
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 1.4e-28 131.3 269 34.2
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.4e-28 131.3 272 33.8
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.4e-28 130.6 277 35.4
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 2.4e-28 130.6 285 34.0
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 4.1e-28 129.8 272 33.1
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 1.2e-27 128.3 288 35.1
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.6e-27 127.9 210 33.8
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 6.0e-27 125.9 167 41.3
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 2.3e-26 124.0 368 31.0
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 6.6e-26 122.5 313 31.0
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 6.6e-26 122.5 320 31.6
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 5.6e-25 119.4 249 32.5
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 1.2e-24 118.2 273 35.2
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 4.7e-24 116.3 246 34.1
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.2e-22 111.7 162 39.5
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 3.4e-22 110.2 210 36.7
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.9e-20 104.4 155 38.7
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 2.3e-18 97.4 173 38.7
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.1e-17 95.1 181 36.5
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.7e-13 81.3 131 35.9
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.6e-11 73.2 116 38.8
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.0e-11 72.8 90 41.1
PRCOL_00002207 Prasinoderma coloniale HOM05D005374 ORTHO05D006534 1.9e-09 67.8 252 30.2
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.3e-09 67.0 101 38.6
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 6.2e-08 62.8 84 42.9
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.1e-07 62.0 76 43.4
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 1.4e-07 61.6 91 39.6
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 2.6e-06 57.4 147 31.3
Cc01_g07460 Coffea canephora HOM05D006479 ORTHO05D008310 9.9e-06 55.5 159 27.7
SHI25344 Sapria himalayana HOM05D006479 ORTHO05D008310 9.9e-06 55.5 164 29.9


User provided reference genes

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