Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 1.8e-47 192.2 93 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 9.6e-17 90.1 69 60.9
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 1.8e-15 85.9 67 52.2
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 6.8e-15 84.0 73 52.1
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 8.9e-15 83.6 63 55.6
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 8.9e-15 83.6 63 55.6
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 1.2e-14 83.2 80 47.5
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 4.4e-14 81.3 74 50.0
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 4.4e-14 81.3 75 50.7
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 5.8e-14 80.9 75 49.3
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 7.6e-14 80.5 87 47.1
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 7.6e-14 80.5 74 50.0
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 7.6e-14 80.5 83 48.2
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 7.6e-14 80.5 80 45.0
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 7.6e-14 80.5 69 50.7
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 7.6e-14 80.5 79 50.6
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 7.6e-14 80.5 79 50.6
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 7.6e-14 80.5 69 50.7
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 9.9e-14 80.1 83 48.2
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 9.9e-14 80.1 69 50.7
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 1.3e-13 79.7 74 48.6
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 1.3e-13 79.7 75 50.7
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 1.3e-13 79.7 75 50.7
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 1.3e-13 79.7 75 50.7
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 1.3e-13 79.7 75 49.3
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.3e-13 79.7 75 49.3
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 1.7e-13 79.3 74 47.3
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 2.2e-13 79.0 60 55.0
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 2.2e-13 79.0 63 52.4
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.2e-13 79.0 73 49.3
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 2.2e-13 79.0 75 49.3
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 2.2e-13 79.0 60 55.0
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 2.2e-13 79.0 63 52.4
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 2.2e-13 79.0 75 50.7
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 2.2e-13 79.0 63 52.4
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 2.2e-13 79.0 82 48.8
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 2.2e-13 79.0 75 50.7
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 2.2e-13 79.0 74 48.6
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 2.9e-13 78.6 75 50.7
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 2.9e-13 78.6 75 49.3
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 2.9e-13 78.6 75 49.3
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 2.9e-13 78.6 75 49.3
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 2.9e-13 78.6 75 49.3
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 2.9e-13 78.6 63 52.4
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 2.9e-13 78.6 69 50.7
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 2.9e-13 78.6 60 55.0
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 2.9e-13 78.6 60 55.0
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 2.9e-13 78.6 60 55.0
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 2.9e-13 78.6 82 47.6
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 3.8e-13 78.2 63 52.4
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 3.8e-13 78.2 63 52.4
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 3.8e-13 78.2 63 52.4
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 3.8e-13 78.2 63 52.4
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 3.8e-13 78.2 75 50.7
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 3.8e-13 78.2 63 52.4
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 3.8e-13 78.2 63 52.4
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 3.8e-13 78.2 75 48.0
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 3.8e-13 78.2 75 48.0
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.8e-13 78.2 75 49.3
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.8e-13 78.2 75 49.3
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 3.8e-13 78.2 75 49.3
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 3.8e-13 78.2 63 52.4
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 3.8e-13 78.2 74 47.3
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 4.9e-13 77.8 75 49.3
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 4.9e-13 77.8 63 52.4
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 4.9e-13 77.8 75 49.3
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 6.4e-13 77.4 74 48.6
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 6.4e-13 77.4 65 50.8
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 6.4e-13 77.4 69 49.3
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 6.4e-13 77.4 69 49.3
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 6.4e-13 77.4 69 49.3
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 6.4e-13 77.4 69 49.3
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 6.4e-13 77.4 75 48.0
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 6.4e-13 77.4 75 48.0
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 6.4e-13 77.4 75 48.0
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 6.4e-13 77.4 69 49.3
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 6.4e-13 77.4 74 47.3
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 6.4e-13 77.4 74 48.6
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 8.4e-13 77.0 63 50.8
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 8.4e-13 77.0 75 49.3
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 8.4e-13 77.0 75 49.3
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 8.4e-13 77.0 69 47.8
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 8.4e-13 77.0 69 49.3
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 8.4e-13 77.0 69 49.3
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 8.4e-13 77.0 74 47.3
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 8.4e-13 77.0 74 47.3
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-12 76.6 57 56.1
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 1.1e-12 76.6 75 50.7
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 1.1e-12 76.6 69 47.8
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 1.1e-12 76.6 69 47.8
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 1.1e-12 76.6 63 50.8
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 1.1e-12 76.6 75 48.0
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 1.4e-12 76.3 73 47.9
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 1.4e-12 76.3 75 48.0
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 1.9e-12 75.9 63 50.8
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 1.9e-12 75.9 63 50.8
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.9e-12 75.9 75 46.7
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.9e-12 75.9 75 46.7
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.9e-12 75.9 75 46.7
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 1.9e-12 75.9 79 45.6
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 1.9e-12 75.9 63 50.8
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.9e-12 75.9 63 50.8
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 2.4e-12 75.5 82 45.1
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 2.4e-12 75.5 63 50.8
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 3.2e-12 75.1 63 49.2
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 3.2e-12 75.1 74 45.9
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 3.2e-12 75.1 74 47.3
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 4.2e-12 74.7 65 49.2
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 4.2e-12 74.7 51 60.8
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 7.1e-12 73.9 86 45.3
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 1.2e-11 73.2 52 57.7
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 1.6e-11 72.8 51 58.8
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 2.7e-11 72.0 51 58.8
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 2.7e-11 72.0 50 62.0
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 7.8e-11 70.5 50 60.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 1.0e-10 70.1 52 55.8
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 1.5e-09 66.2 66 47.0
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 1.9e-09 65.9 70 41.4
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 3.3e-09 65.1 49 55.1


User provided reference genes

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