Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 1.6e-166 589.3 296 100.0
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 2.0e-84 316.6 294 58.8
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 1.6e-81 307.0 288 58.3
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 1.0e-80 304.3 288 57.6
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.0e-80 304.3 289 57.1
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 2.3e-80 303.1 289 58.8
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 2.3e-80 303.1 288 56.6
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 3.9e-80 302.4 288 56.2
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 5.1e-80 302.0 288 56.9
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 8.7e-80 301.2 288 56.2
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 1.1e-79 300.8 286 57.0
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.9e-79 300.1 291 55.7
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 4.3e-79 298.9 288 55.2
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 5.6e-79 298.5 292 53.8
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 9.6e-79 297.7 288 56.2
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 9.6e-79 297.7 289 55.4
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 9.6e-79 297.7 292 54.8
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 9.6e-79 297.7 288 54.9
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 1.3e-78 297.4 287 56.1
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 2.8e-78 296.2 292 55.1
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 2.8e-78 296.2 289 55.7
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 6.2e-78 295.0 291 54.0
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 6.2e-78 295.0 288 55.6
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 8.1e-78 294.7 288 55.6
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 8.1e-78 294.7 288 55.2
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 8.1e-78 294.7 289 55.0
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 1.1e-77 294.3 289 55.0
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 1.8e-77 293.5 289 54.3
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.4e-77 293.1 288 56.6
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 2.4e-77 293.1 290 54.8
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 2.4e-77 293.1 289 56.1
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 3.1e-77 292.7 292 55.5
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.1e-77 292.7 286 54.9
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 3.1e-77 292.7 287 54.0
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 4.0e-77 292.4 291 55.3
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 4.0e-77 292.4 289 54.7
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 4.0e-77 292.4 288 54.5
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 4.0e-77 292.4 288 54.5
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 5.3e-77 292.0 288 53.1
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 6.9e-77 291.6 288 53.5
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 6.9e-77 291.6 291 54.0
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 9.0e-77 291.2 289 55.0
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 9.0e-77 291.2 289 55.0
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 9.0e-77 291.2 291 54.3
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.2e-76 290.8 290 54.8
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.2e-76 290.8 293 55.6
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 1.2e-76 290.8 291 54.3
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 1.2e-76 290.8 288 54.9
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.5e-76 290.4 288 54.2
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 1.5e-76 290.4 288 54.5
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 1.5e-76 290.4 288 54.5
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 1.5e-76 290.4 288 54.5
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 1.5e-76 290.4 288 54.5
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 1.5e-76 290.4 288 55.6
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.5e-76 290.4 289 54.3
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.5e-76 290.4 287 54.4
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 1.5e-76 290.4 288 54.2
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 1.5e-76 290.4 288 53.8
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.5e-76 290.4 288 54.9
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 1.5e-76 290.4 284 54.6
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 2.0e-76 290.0 288 54.5
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 2.0e-76 290.0 291 54.6
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 2.6e-76 289.7 301 52.8
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 2.6e-76 289.7 290 53.4
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.6e-76 289.7 291 55.0
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.4e-76 289.3 288 54.2
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 3.4e-76 289.3 292 54.8
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 3.4e-76 289.3 289 54.3
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 3.4e-76 289.3 289 54.7
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 3.4e-76 289.3 288 55.6
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 3.4e-76 289.3 288 53.8
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 3.4e-76 289.3 292 54.5
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 4.5e-76 288.9 288 55.6
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 5.8e-76 288.5 288 54.5
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 5.8e-76 288.5 289 53.6
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 7.6e-76 288.1 288 53.8
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 9.9e-76 287.7 286 55.9
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.3e-75 287.3 286 52.4
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.3e-75 287.3 288 55.6
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 1.3e-75 287.3 277 56.3
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.3e-75 287.3 291 53.3
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.7e-75 287.0 290 53.8
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 1.7e-75 287.0 290 53.8
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 1.7e-75 287.0 289 53.6
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.7e-75 287.0 288 53.8
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 1.7e-75 287.0 288 55.2
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 2.2e-75 286.6 288 53.5
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 2.9e-75 286.2 288 53.1
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 2.9e-75 286.2 286 53.8
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 3.8e-75 285.8 286 55.6
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 4.9e-75 285.4 290 53.4
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 4.9e-75 285.4 286 53.5
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 4.9e-75 285.4 288 54.2
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 4.9e-75 285.4 288 53.8
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 6.4e-75 285.0 290 53.1
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 6.4e-75 285.0 286 55.6
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 8.4e-75 284.6 288 54.2
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 8.4e-75 284.6 286 55.6
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 8.4e-75 284.6 287 54.4
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 8.4e-75 284.6 291 55.3
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 2.4e-74 283.1 286 53.1
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 2.4e-74 283.1 289 54.0
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 2.4e-74 283.1 286 54.5
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 3.2e-74 282.7 288 53.1
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 3.2e-74 282.7 285 53.7
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 3.2e-74 282.7 292 55.5
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 3.2e-74 282.7 291 54.3
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 4.2e-74 282.3 288 53.1
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 4.2e-74 282.3 288 53.5
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 5.5e-74 282.0 286 54.2
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 9.3e-74 281.2 289 51.6
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 9.3e-74 281.2 290 52.8
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.2e-73 280.8 288 52.8
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.2e-73 280.8 290 52.4
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.2e-73 280.8 284 53.9
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 1.2e-73 280.8 289 53.6
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.1e-73 280.0 288 51.7
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 2.1e-73 280.0 288 52.1
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.7e-73 279.6 290 52.1
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 4.6e-73 278.9 291 52.9
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 7.9e-73 278.1 286 53.5
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.3e-72 277.3 265 57.4
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.3e-72 276.6 298 53.7
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 3.0e-72 276.2 291 54.0
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 5.1e-72 275.4 289 51.2
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 1.5e-71 273.9 264 54.9
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 4.3e-71 272.3 291 52.6
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 4.8e-70 268.9 268 53.4
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 4.8e-70 268.9 290 53.4
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 2.4e-69 266.5 259 56.0
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 3.1e-69 266.2 289 50.9
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 4.0e-69 265.8 287 53.3
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.5e-68 263.8 264 52.7
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.0e-67 261.2 262 53.1
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.3e-67 260.8 289 50.9
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 2.9e-67 259.6 318 48.4
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 1.4e-66 257.3 288 50.3
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 3.2e-66 256.1 263 54.4
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 3.3e-63 246.1 288 48.3
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 8.2e-62 241.5 288 47.9
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 2.4e-61 240.0 191 63.9
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 4.1e-61 239.2 288 49.3
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 2.6e-60 236.5 286 47.6
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 1.3e-59 234.2 231 55.4
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 6.5e-59 231.9 246 52.4
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 3.7e-46 189.5 191 55.5
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.5e-44 182.6 189 55.0
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 5.9e-44 182.2 188 52.7
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 5.0e-43 179.1 185 55.7
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 8.5e-43 178.3 227 47.1
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.8e-40 170.6 187 50.8
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.8e-38 163.3 246 44.7
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 6.5e-35 152.1 167 48.5
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.5e-34 151.0 132 56.8
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 1.5e-31 141.0 192 43.8
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.7e-30 137.5 235 41.3
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.7e-30 136.3 173 48.0
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 1.1e-29 134.8 256 37.5
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 9.1e-29 131.7 163 47.9
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 4.7e-25 119.4 81 67.9
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 3.4e-23 113.2 294 31.0
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 7.5e-23 112.1 96 58.3
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.6e-20 104.4 161 41.6
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 2.6e-15 87.0 96 53.1
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 5.7e-15 85.9 69 65.2
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.3e-14 84.7 63 69.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.7e-14 84.3 87 51.7
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 3.6e-09 66.6 155 36.8


User provided reference genes

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