Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 1.3e-188 662.9 350 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 7.8e-104 381.3 360 61.1
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.5e-102 377.1 368 56.2
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 3.1e-100 369.4 354 56.8
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 4.0e-100 369.0 350 57.4
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 6.8e-100 368.2 348 58.3
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 1.5e-99 367.1 350 58.3
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 4.4e-99 365.5 359 56.8
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 4.4e-99 365.5 356 57.3
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 4.4e-99 365.5 354 58.5
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 5.8e-99 365.2 359 56.3
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 5.8e-99 365.2 350 57.4
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 9.9e-99 364.4 354 58.8
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 9.9e-99 364.4 348 58.6
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 9.9e-99 364.4 348 58.6
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 9.9e-99 364.4 350 57.1
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.7e-98 363.6 356 57.0
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 1.7e-98 363.6 348 57.5
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 2.2e-98 363.2 360 57.2
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 2.9e-98 362.8 355 55.8
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 3.8e-98 362.5 354 57.6
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 4.9e-98 362.1 351 57.0
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 4.9e-98 362.1 350 58.6
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 6.4e-98 361.7 345 59.4
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 8.4e-98 361.3 353 56.1
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 8.4e-98 361.3 356 56.7
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 8.4e-98 361.3 355 58.0
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 8.4e-98 361.3 353 57.5
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 1.1e-97 360.9 347 55.9
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 1.4e-97 360.5 350 58.3
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 1.9e-97 360.1 353 57.5
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 1.9e-97 360.1 355 55.8
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 1.9e-97 360.1 376 56.1
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.9e-97 360.1 355 56.3
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 1.9e-97 360.1 353 55.5
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 2.4e-97 359.8 352 55.7
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 2.4e-97 359.8 358 56.1
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 4.2e-97 359.0 354 57.6
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 5.4e-97 358.6 355 57.5
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 7.1e-97 358.2 354 57.3
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 1.6e-96 357.1 347 56.8
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 2.1e-96 356.7 361 56.5
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 2.1e-96 356.7 372 53.5
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 2.7e-96 356.3 348 56.9
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 3.5e-96 355.9 355 57.2
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 4.6e-96 355.5 366 56.0
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 4.6e-96 355.5 349 54.7
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 6.0e-96 355.1 358 53.9
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 7.8e-96 354.8 357 55.2
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 7.8e-96 354.8 358 57.0
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 7.8e-96 354.8 345 58.3
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 2.3e-95 353.2 358 55.6
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 1.1e-94 350.9 352 56.0
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 1.1e-94 350.9 387 53.0
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.5e-94 350.5 359 56.8
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 2.5e-94 349.7 345 56.2
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 2.5e-94 349.7 351 55.0
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 3.3e-94 349.4 324 59.9
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 4.3e-94 349.0 354 55.1
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 5.6e-94 348.6 354 55.1
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 2.1e-93 346.7 364 54.4
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 4.7e-93 345.5 335 57.3
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 6.2e-93 345.1 352 55.1
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 1.4e-92 344.0 333 58.6
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 1.8e-92 343.6 301 60.5
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 1.8e-92 343.6 349 56.4
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 2.4e-92 343.2 301 61.8
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 4.0e-92 342.4 303 61.1
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 5.3e-92 342.0 301 60.1
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 1.2e-91 340.9 365 54.0
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.6e-91 339.7 322 59.0
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 9.9e-91 337.8 318 56.9
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 2.2e-90 336.7 354 53.7
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 2.9e-90 336.3 301 60.8
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 3.2e-89 332.8 321 57.9
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 2.1e-88 330.1 352 54.5
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 4.6e-88 328.9 290 61.4
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 6.6e-87 325.1 308 58.8
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 8.7e-87 324.7 355 52.4
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 2.1e-85 320.1 354 52.0
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 3.1e-84 316.2 322 55.6
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.5e-83 313.9 433 45.0
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 2.6e-83 313.2 347 52.7
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 4.5e-83 312.4 352 51.1
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 1.3e-82 310.8 290 57.6
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 1.7e-82 310.5 350 50.0
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 2.9e-82 309.7 278 61.2
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 8.4e-82 308.1 317 53.6
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 1.4e-81 307.4 366 52.2
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 9.3e-81 304.7 353 51.6
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 2.3e-79 300.1 361 48.8
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 2.5e-78 296.6 291 59.8
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 1.3e-77 294.3 338 52.4
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 2.4e-76 290.0 504 39.3
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 6.9e-76 288.5 257 59.9
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 7.6e-75 285.0 332 49.4
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 6.2e-69 265.4 355 44.8
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 4.5e-67 259.2 455 39.1
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 3.8e-66 256.1 253 57.3
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 9.3e-65 251.5 244 58.2
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.6e-64 250.8 253 54.2
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 4.6e-64 249.2 252 56.3
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 2.3e-63 246.9 258 53.9
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 3.0e-63 246.5 302 48.0
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 6.7e-63 245.4 243 55.6
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 5.7e-62 242.3 303 47.2
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 4.7e-48 196.1 213 51.2
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 1.8e-47 194.1 142 66.2
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 6.7e-47 192.2 181 58.0
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 9.7e-46 188.3 183 55.2
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 4.8e-45 186.0 142 63.4
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 6.5e-34 149.1 189 47.1
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 1.5e-33 147.9 139 58.3
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 7.0e-20 102.4 133 49.6
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 5.9e-19 99.4 105 50.5
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 1.1e-17 95.1 105 48.6
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 4.0e-15 86.7 87 55.2
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 1.2e-11 75.1 92 47.8
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 2.7e-11 73.9 103 39.8
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 2.9e-10 70.5 69 53.6
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 1.8e-07 61.2 33 81.8
Pp3s42_60 Physcomitrium patens HOM05D000182 ORTHO05D011688 4.0e-07 60.1 274 24.1
Ca_29260_v3 Cicer arietinum L. HOM05D006104 ORTHO05D149040 6.8e-07 59.3 294 21.8


User provided reference genes

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