Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G355 Micromonas commoda HOM05D001235 ORTHO05D005684 0.0e+00 3043.1 1626 100.0
MCO13G077 Micromonas commoda HOM05D001235 ORTHO05D005684 1.2e-220 771.5 1013 46.2
PGR142G1880 Punica granatum HOM05D001235 ORTHO05D005684 8.3e-124 449.9 994 33.5
Gohir.D10G133800 Gossypium hirsutum HOM05D001235 ORTHO05D005684 2.4e-123 448.4 994 33.9
Gorai.011G147600 Gossypium raimondii HOM05D001235 ORTHO05D005684 2.3e-121 441.8 993 33.9
MD04G1025900 Malus domestica HOM05D001235 ORTHO05D005684 3.9e-121 441.0 997 33.5
Migut.N03329 Erythranthe guttata HOM05D001235 ORTHO05D005684 8.6e-121 439.9 985 33.6
Sed0003584 Sechium edule HOM05D001235 ORTHO05D005684 1.9e-120 438.7 988 33.3
Psat6g244000 Pisum sativum HOM05D001235 ORTHO05D005684 2.5e-120 438.3 970 32.8
CDE04G0849 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 5.6e-120 437.2 984 33.1
CsaV3_4G003110 Cucumis sativus L. HOM05D001235 ORTHO05D005684 5.6e-120 437.2 994 33.4
Potri.014G147900 Populus trichocarpa HOM05D001235 ORTHO05D005684 7.3e-120 436.8 1023 33.5
RcHm_v2.0_Chr4g0411331 Rosa chinensis HOM05D001235 ORTHO05D005684 9.5e-120 436.4 994 32.9
SalBow6G1240 Salvia bowleyana HOM05D001235 ORTHO05D005684 9.5e-120 436.4 992 33.7
Medtr6g093240 Medicago truncatula HOM05D001235 ORTHO05D005684 1.2e-119 436.0 978 32.7
FAN07G2568 Fragaria x ananassa HOM05D001235 ORTHO05D005684 1.6e-119 435.6 998 33.1
Pp3c18_14870 Physcomitrium patens HOM05D001235 ORTHO05D005684 2.1e-119 435.3 977 32.8
SEGI_29879 Sequoiadendron giganteum HOM05D001235 ORTHO05D005684 2.1e-119 435.3 991 33.3
Ca_11427_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 2.8e-119 434.9 983 33.0
Potri.002G234500 Populus trichocarpa HOM05D001235 ORTHO05D005684 6.2e-119 433.7 983 33.1
FAN22G1075 Fragaria x ananassa HOM05D001235 ORTHO05D005684 8.0e-119 433.3 996 32.7
MELO3C017735.2 Cucumis melo HOM05D001235 ORTHO05D005684 1.1e-118 433.0 1003 33.4
Mapoly0096s0069 Marchantia polymorpha HOM05D001235 ORTHO05D005684 3.1e-118 431.4 988 32.3
DCAR_027478 Daucus carota HOM05D001235 ORTHO05D005684 5.2e-118 430.6 986 33.1
FAN12G0235 Fragaria x ananassa HOM05D001235 ORTHO05D005684 5.2e-118 430.6 994 32.8
FvH4_4g12510 Fragaria vesca HOM05D001235 ORTHO05D005684 1.5e-117 429.1 994 32.5
PGSC0003DMG400016613 Solanum tuberosum HOM05D001235 ORTHO05D005684 2.0e-117 428.7 987 32.1
VMungo0720G0937 Vigna mungo HOM05D001235 ORTHO05D005684 2.0e-117 428.7 1007 32.9
Cc03_g10000 Coffea canephora HOM05D001235 ORTHO05D005684 5.8e-117 427.2 995 32.4
Aqoxy5G00036 Aquilegia oxysepala HOM05D001235 ORTHO05D005684 7.5e-117 426.8 997 33.3
Ca_29863_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 9.8e-117 426.4 985 32.7
ECA248G1402 Erigeron canadensis HOM05D001235 ORTHO05D005684 1.7e-116 425.6 983 32.3
Duzib212G0549 Durio zibethinus HOM05D001235 ORTHO05D005684 2.9e-116 424.9 989 32.9
Thecc.04G188100 Theobroma cacao HOM05D001235 ORTHO05D005684 2.9e-116 424.9 988 33.1
TWI73G0237 Tripterygium wilfordii HOM05D001235 ORTHO05D005684 2.9e-116 424.9 987 33.5
CAN.G681.26 Capsicum annuum HOM05D001235 ORTHO05D005684 1.1e-115 422.9 991 32.1
Atru.chr3.1828 Acer truncatum HOM05D001235 ORTHO05D005684 1.9e-115 422.2 988 33.8
Glyma.10G298000 Glycine max HOM05D001235 ORTHO05D005684 1.9e-115 422.2 984 33.3
Phvul.007G001400 Phaseolus vulgaris HOM05D001235 ORTHO05D005684 1.9e-115 422.2 981 33.4
Prupe.1G175200 Prunus persica HOM05D001235 ORTHO05D005684 1.9e-115 422.2 995 32.5
Sopen09g035960 Solanum pennellii HOM05D001235 ORTHO05D005684 1.9e-115 422.2 988 32.2
TAR362G0786 Trochodendron aralioides HOM05D001235 ORTHO05D005684 1.9e-115 422.2 993 32.8
Hma1.2p1_0349F.1_g132360 Hydrangea macrophylla HOM05D001235 ORTHO05D005684 2.4e-115 421.8 1036 32.1
Rhsim01G0114000 Rhododendron simsii HOM05D001235 ORTHO05D005684 2.4e-115 421.8 993 32.7
PSO170G5672 Papaver somniferum HOM05D001235 ORTHO05D005684 3.2e-115 421.4 1041 31.8
Eucgr.H00494 Eucalyptus grandis HOM05D001235 ORTHO05D005684 4.1e-115 421.0 982 32.2
Lj5g0010068 Lotus japonicus HOM05D001235 ORTHO05D005684 4.1e-115 421.0 978 32.8
Nn1g08260 Nelumbo nucifera HOM05D001235 ORTHO05D005684 4.1e-115 421.0 997 33.3
Nitab4.5_0001693g0060 Nicotiana tabacum HOM05D001235 ORTHO05D005684 4.1e-115 421.0 1045 31.6
Solyc09g098040.3 Solanum lycopersicum HOM05D001235 ORTHO05D005684 5.4e-115 420.6 987 31.9
Hund19034 Selenicereus undatus HOM05D001235 ORTHO05D005684 7.0e-115 420.2 989 32.8
Gorai.006G226300 Gossypium raimondii HOM05D001235 ORTHO05D005684 9.2e-115 419.9 970 32.6
Lsat_1_v5_gn_1_69940 Lactuca sativa HOM05D001235 ORTHO05D005684 1.6e-114 419.1 984 32.5
Sabra02G0178900 Salix brachista HOM05D001235 ORTHO05D005684 2.1e-114 418.7 985 33.1
CSS0039330 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 2.7e-114 418.3 999 32.1
Sp2g21450 Schrenkiella parvula HOM05D001235 ORTHO05D005684 2.7e-114 418.3 997 32.6
Lalb_Chr02g0144531 Lupinus albus HOM05D001235 ORTHO05D005684 7.8e-114 416.8 990 32.3
Cfa008685 Carpinus fangiana HOM05D001235 ORTHO05D005684 1.3e-113 416.0 995 32.1
Gohir.D09G202400 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.7e-113 415.6 983 32.2
Actinidia35919 Actinidia chinensis HOM05D001235 ORTHO05D005684 2.3e-113 415.2 998 31.9
Oeu001997.1 Olea europaea HOM05D001235 ORTHO05D005684 2.3e-113 415.2 1012 32.1
Duzib151G0601 Durio zibethinus HOM05D001235 ORTHO05D005684 3.0e-113 414.8 1018 32.1
CANSAT78G1591 Cannabis sativa HOM05D001235 ORTHO05D005684 5.1e-113 414.1 988 32.4
THA.LOC104818773 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 8.6e-113 413.3 1004 33.1
BcaB07g29956 Brassica carinata HOM05D001235 ORTHO05D005684 1.5e-112 412.5 987 32.1
BcaB04g19735 Brassica carinata HOM05D001235 ORTHO05D005684 1.9e-112 412.1 1000 32.1
PSO357G0146 Papaver somniferum HOM05D001235 ORTHO05D005684 1.9e-112 412.1 994 31.8
Dinv27164 Davidia involucrata HOM05D001235 ORTHO05D005684 2.5e-112 411.8 994 32.5
SMO146G0043 Selaginella moellendorffii HOM05D001235 ORTHO05D005684 3.3e-112 411.4 982 32.1
THA.LOC104822294 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 3.3e-112 411.4 994 32.2
MSTRG.22434 Avicennia marina HOM05D001235 ORTHO05D005684 5.6e-112 410.6 991 32.0
EL10Ac3g07409 Beta vulgaris HOM05D001235 ORTHO05D005684 5.6e-112 410.6 1016 32.8
BcaC03g17860 Brassica carinata HOM05D001235 ORTHO05D005684 7.3e-112 410.2 989 32.7
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 7.3e-112 410.2 982 33.1
Aa31LG11G10130 Aethionema arabicum HOM05D001235 ORTHO05D005684 9.5e-112 409.8 1034 32.3
ATR0686G153 Amborella trichopoda HOM05D001235 ORTHO05D005684 9.5e-112 409.8 999 32.6
Gohir.A09G209000 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.6e-111 409.1 968 31.9
Ah.04g149690 Amaranthus hybridus HOM05D001235 ORTHO05D005684 2.8e-111 408.3 988 32.0
CiPaw.01G110000 Carya illinoinensis HOM05D001235 ORTHO05D005684 6.2e-111 407.1 997 32.8
HanXRQChr01g0021711 Helianthus annuus HOM05D001235 ORTHO05D005684 6.2e-111 407.1 985 31.9
CBR_g30239 Chara braunii HOM05D001235 ORTHO05D005684 8.1e-111 406.8 1000 33.1
FAN17G0427 Fragaria x ananassa HOM05D001235 ORTHO05D005684 8.1e-111 406.8 941 33.0
Manes.05G194300 Manihot esculenta HOM05D001235 ORTHO05D005684 1.4e-110 406.0 978 33.6
BcaC04g23619 Brassica carinata HOM05D001235 ORTHO05D005684 1.8e-110 405.6 1002 31.6
A09p05840 Brassica napus HOM05D001235 ORTHO05D005684 6.8e-110 403.7 1003 32.0
Dinv13678 Davidia involucrata HOM05D001235 ORTHO05D005684 1.2e-109 402.9 1003 31.8
AL6G38320 Arabidopsis lyrata HOM05D001235 ORTHO05D005684 1.5e-109 402.5 1017 31.7
AUR62018504 Chenopodium quinoa HOM05D001235 ORTHO05D005684 1.5e-109 402.5 1008 31.5
AT5G26570 Arabidopsis thaliana HOM05D001235 ORTHO05D005684 2.6e-109 401.7 1007 31.7
vmacro20797 Vaccinium macrocarpon HOM05D001235 ORTHO05D005684 3.4e-109 401.4 993 31.9
BraA09t36226Z Brassica rapa HOM05D001235 ORTHO05D005684 2.2e-108 398.7 1003 31.8
QL06p027955 Quercus lobata HOM05D001235 ORTHO05D005684 2.2e-108 398.7 999 32.1
Os12g0297500 Oryza sativa ssp. japonica HOM05D001235 ORTHO05D005684 3.7e-108 397.9 1028 29.9
HPP92_009959 Vanilla planifolia HOM05D001235 ORTHO05D005684 1.4e-107 396.0 1000 31.3
Sabra14G0111700 Salix brachista HOM05D001235 ORTHO05D005684 1.9e-107 395.6 1026 32.0
CARHR187040 Cardamine hirsuta HOM05D001235 ORTHO05D005684 2.4e-107 395.2 1004 31.2
Peaxi162Scf00286g00547 Petunia axillaris HOM05D001235 ORTHO05D005684 5.4e-107 394.0 996 30.8
C09p06430 Brassica napus HOM05D001235 ORTHO05D005684 2.1e-106 392.1 1003 31.6
BolC9t53563H Brassica oleracea HOM05D001235 ORTHO05D005684 2.1e-106 392.1 1003 31.6
BraA02t08895Z Brassica rapa HOM05D001235 ORTHO05D005684 2.1e-106 392.1 988 32.3
BolC2t11957H Brassica oleracea HOM05D001235 ORTHO05D005684 6.0e-106 390.6 995 32.0
GSVIVG01031639001 Vitis vinifera HOM05D001235 ORTHO05D005684 6.0e-106 390.6 997 31.7
C02p59020 Brassica napus HOM05D001235 ORTHO05D005684 1.0e-105 389.8 1007 31.9
Carub.0006s2413 Capsella rubella HOM05D001235 ORTHO05D005684 2.3e-105 388.7 1201 30.1
ClCG07G015490 Citrullus lanatus HOM05D001235 ORTHO05D005684 4.7e-103 380.9 896 33.7
A02p39300 Brassica napus HOM05D001235 ORTHO05D005684 8.1e-103 380.2 1007 31.7
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 1.4e-102 379.4 1040 32.2
AUR62020915 Chenopodium quinoa HOM05D001235 ORTHO05D005684 1.8e-102 379.0 1068 30.4
Nitab4.5_0012294g0010 Nicotiana tabacum HOM05D001235 ORTHO05D005684 5.2e-102 377.5 991 30.6
Pp3c14_19150 Physcomitrium patens HOM05D001235 ORTHO05D005684 6.4e-100 370.5 996 30.0
Haze_11704 Corylus avellana HOM05D001235 ORTHO05D005684 1.0e-97 363.2 1088 29.0
Medtr1g117000 Medicago truncatula HOM05D001235 ORTHO05D005684 6.6e-97 360.5 846 32.3
Sc19g0007540 Simmondsia chinensis HOM05D001235 ORTHO05D005684 4.7e-95 354.4 805 33.4
Lj6C311G3 Lonicera japonica HOM05D001235 ORTHO05D005684 7.6e-93 347.1 1135 27.9
CSS0015752 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 3.0e-89 335.1 1153 27.6
PRCOL_00000902 Prasinoderma coloniale HOM05D001235 ORTHO05D005684 1.1e-88 333.2 982 32.6
Cpa.g.sc502.2 Carica papaya HOM05D001235 ORTHO05D005684 4.2e-83 314.7 734 34.1
SGA_v2.0_scaffold28G12047 Striga asiatica HOM05D001235 ORTHO05D005684 2.7e-74 285.4 821 29.7
COL.COLO4_08688 Corchorus olitorius HOM05D001235 ORTHO05D005684 1.1e-72 280.0 645 34.0
Sed0023516 Sechium edule HOM05D001235 ORTHO05D005684 3.3e-72 278.5 669 31.2
Gohir.A10G133100 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.0e-68 266.9 594 32.0
Thhalv10003634m.g Eutrema salsugineum HOM05D001235 ORTHO05D005684 7.9e-66 257.3 670 29.6
Zm00001eb409850 Zea mays HOM05D001235 ORTHO05D005684 1.0e-65 256.9 550 31.6
Pp3c17_18900 Physcomitrium patens HOM05D001235 ORTHO05D005684 1.1e-64 253.4 966 25.4
CDE07G1609 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 3.3e-56 225.3 526 34.0
Ciclev10006658m.g Citrus clementina HOM05D001235 ORTHO05D005684 4.3e-56 224.9 546 35.2
BcaC04g23551 Brassica carinata HOM05D001235 ORTHO05D005684 8.2e-55 220.7 702 28.1
MCO05G382 Micromonas commoda HOM05D001235 ORTHO05D005684 1.9e-51 209.5 607 32.8
CDE07G0946 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 6.5e-44 184.5 394 33.0
TPR.G40801 Trifolium pratense HOM05D001235 ORTHO05D005684 8.2e-39 167.5 317 36.9
Glyma.20G249000 Glycine max HOM05D001235 ORTHO05D005684 2.2e-36 159.5 318 35.2
arahy.Tifrunner.gnm1.ann1.I3JYC0 Arachis hypogaea HOM05D001235 ORTHO05D005684 2.9e-36 159.1 312 36.2
arahy.Tifrunner.gnm1.ann1.MZNG30 Arachis hypogaea HOM05D001235 ORTHO05D005684 2.9e-36 159.1 312 36.2
TPR.G8889 Trifolium pratense HOM05D001235 ORTHO05D005684 2.3e-25 122.9 285 29.5
Cpa.g.sc8.311 Carica papaya HOM05D001235 ORTHO05D005684 8.8e-25 120.9 205 36.1
RcHm_v2.0_Chr4g0411251 Rosa chinensis HOM05D001235 ORTHO05D005684 2.6e-24 119.4 577 24.3
Ciclev10004968m.g Citrus clementina HOM05D001235 ORTHO05D005684 5.7e-24 118.2 205 36.6
PRCOL_00006458 Prasinoderma coloniale HOM05D001366 ORTHO05D003220 4.4e-16 92.0 698 24.6
MCO06G074 Micromonas commoda HOM05D001366 ORTHO05D003220 1.7e-15 90.1 496 25.8
PRCOL_00000768 Prasinoderma coloniale HOM05D001366 ORTHO05D003220 2.4e-14 86.3 638 24.8
MCO02G032 Micromonas commoda HOM05D001366 ORTHO05D003220 9.2e-14 84.3 486 26.7
MCO07G158 Micromonas commoda HOM05D001366 ORTHO05D003220 2.7e-13 82.8 616 24.8
Psat0s1999g0080 Pisum sativum HOM05D001235 ORTHO05D005684 1.5e-11 77.0 225 26.7
TPR.G40064 Trifolium pratense HOM05D001235 ORTHO05D005684 1.5e-11 77.0 129 32.6
Cre07.g319300 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D003220 4.3e-11 75.5 622 23.3
Cre07.g319340 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D003220 4.3e-11 75.5 622 23.3
Mapoly0038s0029 Marchantia polymorpha HOM05D001366 ORTHO05D003220 7.3e-11 74.7 599 23.4
MCO03G388 Micromonas commoda HOM05D003809 ORTHO05D003935 2.3e-09 69.7 113 34.5
AagrBONN_evm.TU.Sc2ySwM_344.3507 Anthoceros agrestis HOM05D003809 ORTHO05D003935 4.0e-09 68.9 87 39.1
Pp3c23_18810 Physcomitrium patens HOM05D028458 ORTHO05D003935 1.2e-08 67.4 86 38.4
Sp7g22430 Schrenkiella parvula HOM05D001366 ORTHO05D003220 1.5e-08 67.0 608 22.4
CBR_g12420 Chara braunii HOM05D001366 ORTHO05D003220 2.0e-08 66.6 613 22.8
MD08G1203800 Malus domestica HOM05D001366 ORTHO05D003220 2.0e-08 66.6 604 21.7
AagrBONN_evm.TU.Sc2ySwM_368.1797 Anthoceros agrestis HOM05D001366 ORTHO05D003220 5.8e-08 65.1 220 29.1
Cre07.g332300 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D003220 5.8e-08 65.1 643 24.9
Thhalv10024230m.g Eutrema salsugineum HOM05D001366 ORTHO05D003220 5.8e-08 65.1 602 21.4
SEGI_39495 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 7.5e-08 64.7 79 38.0
Atru.chr13.974 Acer truncatum HOM05D001366 ORTHO05D003220 9.8e-08 64.3 606 21.3
Pp3c16_3300 Physcomitrium patens HOM05D003809 ORTHO05D003935 9.8e-08 64.3 96 35.4
arahy.Tifrunner.gnm1.ann1.GJ28M3 Arachis hypogaea HOM05D001235 ORTHO05D005684 2.2e-07 63.2 91 40.7
Cre10.g450500 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 2.2e-07 63.2 120 30.8
AagrBONN_evm.TU.Sc2ySwM_344.3722 Anthoceros agrestis HOM05D001366 ORTHO05D003220 2.9e-07 62.8 208 28.4
AagrBONN_evm.TU.Sc2ySwM_344.4529 Anthoceros agrestis HOM05D001366 ORTHO05D003220 2.9e-07 62.8 208 27.9
Carub.0007s1662 Capsella rubella HOM05D001366 ORTHO05D003220 2.9e-07 62.8 605 22.1
Cre09.g407501 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 2.9e-07 62.8 70 40.0
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 3.7e-07 62.4 599 22.0
Mapoly0033s0050 Marchantia polymorpha HOM05D003809 ORTHO05D003935 4.9e-07 62.0 62 41.9
SMO347G0598 Selaginella moellendorffii HOM05D001366 ORTHO05D003220 4.9e-07 62.0 209 28.2
AagrBONN_evm.TU.Sc2ySwM_340.756 Anthoceros agrestis HOM05D001366 ORTHO05D003220 6.4e-07 61.6 207 28.0
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 6.4e-07 61.6 604 21.7
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 6.4e-07 61.6 604 21.7
Zm00001eb367050 Zea mays HOM05D003809 ORTHO05D003935 6.4e-07 61.6 72 38.9
ECA233G2601 Erigeron canadensis HOM05D001366 ORTHO05D003220 8.3e-07 61.2 618 23.9
Lalb_Chr16g0392241 Lupinus albus HOM05D001366 ORTHO05D003220 1.1e-06 60.8 597 22.4
Mapoly0046s0023 Marchantia polymorpha HOM05D001366 ORTHO05D003220 2.4e-06 59.7 626 21.9
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 2.4e-06 59.7 154 24.7
AL7G28770 Arabidopsis lyrata HOM05D001366 ORTHO05D003220 4.1e-06 58.9 605 21.0
TPR.G18917 Trifolium pratense HOM05D001235 ORTHO05D005684 5.4e-06 58.5 102 36.3
COL.COLO4_08689 Corchorus olitorius HOM05D001235 ORTHO05D005684 7.0e-06 58.2 140 27.9
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 7.0e-06 58.2 152 27.0
MCO16G440 Micromonas commoda HOM05D001366 ORTHO05D003220 7.0e-06 58.2 625 24.6
Pp3c8_6520 Physcomitrium patens HOM05D001366 ORTHO05D003220 9.2e-06 57.8 208 26.9
Pp3c8_6536 Physcomitrium patens HOM05D001366 ORTHO05D003220 9.2e-06 57.8 208 26.9
QL09p018643 Quercus lobata HOM05D001366 ORTHO05D003220 9.2e-06 57.8 599 23.2
VMungo0251G0184 Vigna mungo HOM05D001366 ORTHO05D003220 9.2e-06 57.8 178 27.5


User provided reference genes

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