Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 5.5e-192 674.1 332 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 1.8e-102 376.7 310 58.7
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.8e-102 376.7 287 62.4
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 3.1e-102 375.9 285 62.5
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 5.3e-102 375.2 290 61.7
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 6.9e-102 374.8 288 63.2
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 1.2e-101 374.0 308 60.1
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 1.2e-101 374.0 290 61.7
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.0e-101 373.2 290 61.4
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 3.4e-101 372.5 290 61.4
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 3.4e-101 372.5 285 61.8
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 3.4e-101 372.5 295 61.0
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 4.5e-101 372.1 285 61.8
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 4.5e-101 372.1 285 61.8
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 4.5e-101 372.1 295 61.0
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 4.5e-101 372.1 295 61.4
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 5.9e-101 371.7 290 62.4
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 5.9e-101 371.7 290 62.1
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 7.7e-101 371.3 285 62.5
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 7.7e-101 371.3 285 62.1
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 1.3e-100 370.5 328 56.7
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 1.3e-100 370.5 285 62.5
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.7e-100 370.2 285 61.8
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 1.7e-100 370.2 285 61.1
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 1.7e-100 370.2 285 61.1
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 1.7e-100 370.2 290 61.7
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.2e-100 369.8 285 62.5
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 2.2e-100 369.8 290 61.4
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 2.9e-100 369.4 287 62.0
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.9e-100 369.4 285 62.5
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.9e-100 369.4 285 62.5
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 3.8e-100 369.0 285 62.5
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 3.8e-100 369.0 290 62.1
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 3.8e-100 369.0 285 61.1
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 5.0e-100 368.6 290 62.1
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 5.0e-100 368.6 290 62.1
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 6.5e-100 368.2 285 61.4
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 6.5e-100 368.2 292 61.0
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 8.5e-100 367.9 285 61.4
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 8.5e-100 367.9 319 57.1
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 8.5e-100 367.9 290 60.7
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 8.5e-100 367.9 291 62.2
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.4e-99 367.1 285 61.8
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.9e-99 366.7 293 61.1
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 2.5e-99 366.3 290 61.0
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 2.5e-99 366.3 290 61.7
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 2.5e-99 366.3 290 61.0
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 3.2e-99 365.9 286 62.2
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.2e-99 365.9 290 61.7
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 3.2e-99 365.9 290 60.7
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 4.2e-99 365.5 298 60.4
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 4.2e-99 365.5 317 58.4
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 5.5e-99 365.2 290 60.3
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 7.2e-99 364.8 290 61.0
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 7.2e-99 364.8 290 60.7
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 9.4e-99 364.4 290 60.7
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 1.2e-98 364.0 288 60.8
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 1.6e-98 363.6 287 61.3
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.6e-98 363.6 291 59.8
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 2.1e-98 363.2 289 60.9
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 2.7e-98 362.8 290 60.7
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.7e-98 362.8 287 59.9
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 2.7e-98 362.8 330 56.4
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.7e-98 362.8 333 55.6
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.7e-98 362.8 285 60.7
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 2.7e-98 362.8 290 59.3
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 3.6e-98 362.5 290 60.7
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 3.6e-98 362.5 295 60.3
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 3.6e-98 362.5 292 60.3
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 4.7e-98 362.1 290 60.7
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 4.7e-98 362.1 285 60.0
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 4.7e-98 362.1 290 61.0
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 4.7e-98 362.1 290 59.3
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 7.9e-98 361.3 295 59.7
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.0e-97 360.9 290 60.0
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.0e-97 360.9 285 60.7
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.4e-97 360.5 290 60.0
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.4e-97 360.5 285 60.0
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 1.8e-97 360.1 302 59.3
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.8e-97 360.1 287 61.3
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 1.8e-97 360.1 290 60.3
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 2.3e-97 359.8 290 60.0
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 3.0e-97 359.4 292 58.9
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 3.0e-97 359.4 291 61.2
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 3.0e-97 359.4 290 59.3
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.9e-97 359.0 295 59.7
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 3.9e-97 359.0 285 60.0
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 6.7e-97 358.2 280 60.7
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 6.7e-97 358.2 290 59.3
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 8.8e-97 357.8 292 60.3
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 2.6e-96 356.3 285 59.6
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 4.4e-96 355.5 285 60.0
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 4.4e-96 355.5 290 58.6
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 4.4e-96 355.5 285 59.6
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 4.4e-96 355.5 285 59.6
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 7.4e-96 354.8 290 59.7
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 2.2e-95 353.2 290 59.3
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 2.8e-95 352.8 285 59.3
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 2.8e-95 352.8 285 60.4
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 3.7e-95 352.4 285 58.9
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 1.8e-94 350.1 290 58.3
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 3.1e-94 349.4 276 60.9
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 5.3e-94 348.6 283 58.7
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 6.9e-94 348.2 311 55.6
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 4.5e-93 345.5 285 58.6
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.0e-92 344.4 314 54.8
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.0e-92 344.4 281 58.7
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 3.2e-91 339.3 292 57.9
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.3e-89 333.2 288 58.0
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.3e-89 333.2 307 54.7
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.0e-89 332.8 292 57.9
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.1e-88 330.9 311 54.7
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 7.7e-85 318.2 261 59.8
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.0e-84 317.8 402 43.0
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 2.2e-84 316.6 292 56.5
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.5e-84 315.1 254 59.4
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 3.6e-82 309.3 310 53.2
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 8.8e-81 304.7 251 58.2
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 3.3e-80 302.8 284 54.2
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 1.3e-79 300.8 251 58.6
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 8.2e-79 298.1 299 50.2
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 5.3e-78 295.4 260 56.5
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.8e-73 280.4 249 55.0
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 4.1e-62 242.7 211 55.0
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 3.5e-61 239.6 273 48.4
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 3.5e-61 239.6 251 49.0
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 4.0e-57 226.1 171 63.2
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 7.0e-54 215.3 243 49.8
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 1.5e-51 207.6 212 50.0
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.3e-44 184.5 130 65.4
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 5.2e-41 172.6 143 59.4
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 8.9e-41 171.8 226 41.2
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 1.7e-31 141.0 121 55.4
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.0e-29 132.5 253 35.6
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.7e-28 131.0 94 59.6
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.1e-27 128.3 115 52.2
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.8e-25 120.9 103 56.3
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 5.3e-25 119.4 159 42.1
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.4e-24 116.7 72 77.8
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-22 110.9 155 41.3
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.7e-20 104.4 157 40.1
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 9.6e-19 98.6 59 79.7
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 6.2e-18 95.9 156 35.9
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 9.6e-11 72.0 51 60.8
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 3.7e-10 70.1 60 56.7
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 8.1e-10 68.9 45 66.7
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 1.8e-09 67.8 51 56.9
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 3.1e-09 67.0 50 58.0
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 2.2e-07 60.8 36 72.2
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 4.9e-07 59.7 37 75.7


User provided reference genes

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