Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 2.5e-206 721.8 366 100.0
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.7e-32 144.4 315 34.6
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 8.9e-26 122.1 282 30.9
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 8.9e-26 122.1 278 29.9
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 2.6e-25 120.6 279 30.1
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 1.3e-24 118.2 278 29.9
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.2e-24 117.5 339 28.9
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 2.9e-24 117.1 280 29.6
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 2.9e-24 117.1 277 30.3
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 2.9e-24 117.1 280 30.0
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.8e-24 116.7 277 30.3
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 3.8e-24 116.7 280 30.0
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 4.9e-24 116.3 278 28.1
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 6.4e-24 115.9 282 30.9
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 8.4e-24 115.5 275 30.9
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 1.4e-23 114.8 275 30.9
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 1.4e-23 114.8 275 30.5
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.4e-23 114.8 280 30.0
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 1.9e-23 114.4 277 29.6
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 1.9e-23 114.4 325 31.4
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 3.2e-23 113.6 280 29.6
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.2e-23 113.6 282 29.4
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 5.4e-23 112.8 280 30.4
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 5.4e-23 112.8 280 30.0
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 5.4e-23 112.8 279 29.0
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 5.4e-23 112.8 268 29.1
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 7.1e-23 112.5 278 27.3
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 9.2e-23 112.1 277 28.9
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 9.2e-23 112.1 283 29.3
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.2e-22 111.7 280 29.6
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 1.2e-22 111.7 280 29.6
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 1.6e-22 111.3 283 29.0
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 2.7e-22 110.5 277 29.6
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 3.5e-22 110.2 336 28.0
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 3.5e-22 110.2 280 29.6
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 3.5e-22 110.2 280 28.2
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 3.5e-22 110.2 286 29.0
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 4.6e-22 109.8 280 29.3
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 6.0e-22 109.4 335 28.4
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 6.0e-22 109.4 277 29.6
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 6.0e-22 109.4 280 29.6
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 6.0e-22 109.4 281 29.9
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 6.0e-22 109.4 284 29.9
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 7.8e-22 109.0 277 28.9
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 7.8e-22 109.0 277 28.9
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 1.0e-21 108.6 282 28.0
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 1.0e-21 108.6 280 27.9
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 1.3e-21 108.2 277 28.2
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 1.3e-21 108.2 277 27.8
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 1.7e-21 107.8 278 29.1
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 1.7e-21 107.8 278 29.1
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 1.7e-21 107.8 280 27.9
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 1.7e-21 107.8 271 29.2
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 1.7e-21 107.8 336 29.2
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 2.3e-21 107.5 338 27.5
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 3.0e-21 107.1 277 29.2
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 3.0e-21 107.1 277 27.8
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 3.9e-21 106.7 280 27.5
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 3.9e-21 106.7 280 27.9
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 5.1e-21 106.3 280 28.6
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 5.1e-21 106.3 283 29.7
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 5.1e-21 106.3 282 30.5
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 8.6e-21 105.5 282 30.1
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 1.1e-20 105.1 280 27.5
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.1e-20 105.1 282 29.4
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 1.1e-20 105.1 277 28.2
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.1e-20 105.1 337 29.1
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.5e-20 104.8 283 28.6
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 1.5e-20 104.8 278 27.0
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 1.9e-20 104.4 280 27.5
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.9e-20 104.4 287 27.2
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 2.5e-20 104.0 280 27.5
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 3.3e-20 103.6 339 26.3
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 4.3e-20 103.2 280 28.9
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 4.3e-20 103.2 278 29.5
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 9.6e-20 102.1 239 31.4
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 9.6e-20 102.1 269 29.4
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 1.2e-19 101.7 277 28.2
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 1.2e-19 101.7 278 28.1
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.6e-19 101.3 287 26.8
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 1.6e-19 101.3 292 29.5
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 2.1e-19 100.9 280 27.9
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.1e-19 100.9 280 27.9
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 2.1e-19 100.9 271 27.7
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 4.7e-19 99.8 336 25.6
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 8.1e-19 99.0 279 31.9
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 1.1e-18 98.6 277 26.4
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 1.1e-18 98.6 280 26.4
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 1.8e-18 97.8 275 28.7
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 2.4e-18 97.4 277 26.7
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.4e-18 97.4 194 29.9
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.1e-18 97.1 274 28.1
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 3.1e-18 97.1 277 27.8
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.0e-18 96.7 332 29.2
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 4.0e-18 96.7 277 26.7
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 5.2e-18 96.3 276 27.2
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 1.5e-17 94.7 267 27.7
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.4e-17 93.6 312 28.2
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.8e-17 92.8 310 27.7
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.6e-17 92.4 230 30.4
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.6e-17 92.4 301 29.2
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.2e-16 90.9 236 30.1
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 2.2e-16 90.9 286 26.9
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.2e-16 90.9 293 27.6
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 8.4e-16 89.0 206 28.6
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 8.4e-16 89.0 247 28.3
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 2.4e-15 87.4 281 26.7
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.6e-14 84.7 235 29.8
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-13 82.0 346 25.1
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.7e-13 79.0 204 27.9
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.9e-12 77.8 201 26.4
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 7.3e-12 75.9 192 31.8
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 7.3e-12 75.9 300 22.7
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 9.6e-12 75.5 108 37.0
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.8e-11 73.2 225 28.9
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.2e-11 72.8 210 27.6
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-07 61.6 85 36.5
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 4.2e-07 60.1 164 26.2
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 2.1e-06 57.8 171 26.9


User provided reference genes

Program Settings