Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G309 Micromonas commoda HOM05D022748 ORTHO05D003935 0.0e+00 1481.8 734 100.0
PRCOL_00005124 Prasinoderma coloniale HOM05D022748 ORTHO05D003935 1.6e-87 328.2 452 43.6
MCO03G441 Micromonas commoda HOM05D022748 ORTHO05D003935 4.6e-82 310.1 433 40.6
MCO08G075 Micromonas commoda HOM05D022748 ORTHO05D003935 1.7e-28 132.1 432 26.9
Ah.01g023430 Amaranthus hybridus HOM05D000983 ORTHO05D001922 1.1e-14 86.3 303 24.8
BcaC08g46429 Brassica carinata HOM05D000983 ORTHO05D006794 7.1e-14 83.6 326 27.3
BolC6t39434H Brassica oleracea HOM05D000983 ORTHO05D006794 7.1e-14 83.6 326 27.3
Os08g0473900 Oryza sativa ssp. japonica HOM05D000983 ORTHO05D001922 7.1e-14 83.6 319 24.8
C06p43620 Brassica napus HOM05D000983 ORTHO05D006794 3.5e-13 81.3 326 27.0
Sp5g24940 Schrenkiella parvula HOM05D000983 ORTHO05D006794 3.5e-13 81.3 320 27.2
Aa31LG6G4350 Aethionema arabicum HOM05D000983 ORTHO05D006794 4.6e-13 80.9 316 27.2
CARHR062910 Cardamine hirsuta HOM05D000983 ORTHO05D006794 7.8e-13 80.1 303 27.4
AT1G69830 Arabidopsis thaliana HOM05D000983 ORTHO05D006794 1.0e-12 79.7 303 27.4
AL2G29120 Arabidopsis lyrata HOM05D000983 ORTHO05D006794 1.3e-12 79.3 303 27.4
Thhalv10018099m.g Eutrema salsugineum HOM05D000983 ORTHO05D006794 1.3e-12 79.3 303 27.4
Lsat_1_v5_gn_8_54140 Lactuca sativa HOM05D000983 ORTHO05D006794 1.3e-12 79.3 300 26.3
Zm00001eb038060 Zea mays HOM05D000983 ORTHO05D001922 1.3e-12 79.3 317 24.6
SEGI_34562 Sequoiadendron giganteum HOM05D000983 ORTHO05D001922 1.7e-12 79.0 322 27.0
BcaB03g14761 Brassica carinata HOM05D000983 ORTHO05D006794 2.3e-12 78.6 303 27.4
Carub.0002s1652 Capsella rubella HOM05D000983 ORTHO05D006794 2.3e-12 78.6 301 27.6
TAR629G2838 Trochodendron aralioides HOM05D000983 ORTHO05D006794 2.3e-12 78.6 324 26.2
A07p36260 Brassica napus HOM05D000983 ORTHO05D006794 3.0e-12 78.2 303 27.1
BraA07t31198Z Brassica rapa HOM05D000983 ORTHO05D006794 3.0e-12 78.2 303 27.1
CANSAT64G0240 Cannabis sativa HOM05D000983 ORTHO05D006794 3.0e-12 78.2 299 26.8
EL10Ac9g21311 Beta vulgaris HOM05D000983 ORTHO05D001922 5.1e-12 77.4 349 22.6
Lsat_1_v5_gn_3_51421 Lactuca sativa HOM05D000983 ORTHO05D006794 5.1e-12 77.4 302 26.2
MSTRG.7822 Avicennia marina HOM05D000983 ORTHO05D006794 8.6e-12 76.6 317 25.6
Lj5g0026674 Lotus japonicus HOM05D000983 ORTHO05D001922 8.6e-12 76.6 305 24.6
ClCG05G024550 Citrullus lanatus HOM05D000983 ORTHO05D006794 1.1e-11 76.3 301 27.2
ECA246G2169 Erigeron canadensis HOM05D000983 ORTHO05D006794 1.1e-11 76.3 299 26.4
CsaV3_5G032400 Cucumis sativus L. HOM05D000983 ORTHO05D006794 1.5e-11 75.9 301 26.9
Glyma.08G296800 Glycine max HOM05D000983 ORTHO05D006794 1.5e-11 75.9 297 26.6
EL10Ac6g13156 Beta vulgaris HOM05D000983 ORTHO05D006794 1.9e-11 75.5 322 25.8
Duzib268G0604 Durio zibethinus HOM05D000983 ORTHO05D006794 1.9e-11 75.5 326 25.8
ATR1120G063 Amborella trichopoda HOM05D000983 ORTHO05D006794 2.5e-11 75.1 301 26.6
Cc10_g04170 Coffea canephora HOM05D000983 ORTHO05D001922 3.3e-11 74.7 324 26.2
Lj6A793T95 Lonicera japonica HOM05D000983 ORTHO05D006794 3.3e-11 74.7 314 25.5
Thecc.02G354600 Theobroma cacao HOM05D000983 ORTHO05D006794 3.3e-11 74.7 317 25.2
Lj3A1042T89 Lonicera japonica HOM05D000983 ORTHO05D006794 4.3e-11 74.3 321 25.5
Lalb_Chr10g0097991 Lupinus albus HOM05D000983 ORTHO05D006794 4.3e-11 74.3 323 24.5
Nn4g23056 Nelumbo nucifera HOM05D000983 ORTHO05D006794 4.3e-11 74.3 298 25.5
MELO3C012071.2 Cucumis melo HOM05D000983 ORTHO05D006794 5.6e-11 73.9 350 25.1
Eucgr.G02543 Eucalyptus grandis HOM05D000983 ORTHO05D006794 5.6e-11 73.9 324 25.0
PGR119G1594 Punica granatum HOM05D000983 ORTHO05D006794 5.6e-11 73.9 320 25.3
MSTRG.674 Avicennia marina HOM05D000983 ORTHO05D006794 7.3e-11 73.6 323 24.5
Aqoxy3G03277 Aquilegia oxysepala HOM05D000983 ORTHO05D006794 9.5e-11 73.2 320 24.7
TWI56G0860 Tripterygium wilfordii HOM05D000983 ORTHO05D001922 9.5e-11 73.2 293 24.6
Hund25267 Selenicereus undatus HOM05D000983 ORTHO05D006794 1.2e-10 72.8 296 25.7
Cc11_g13430 Coffea canephora HOM05D000983 ORTHO05D006794 1.6e-10 72.4 301 25.6
Gorai.005G139200 Gossypium raimondii HOM05D000983 ORTHO05D006794 1.6e-10 72.4 301 25.6
Medtr8g468990 Medicago truncatula HOM05D000983 ORTHO05D006794 1.6e-10 72.4 334 24.0
QL03p065556 Quercus lobata HOM05D000983 ORTHO05D006794 1.6e-10 72.4 320 25.0
RcHm_v2.0_Chr4g0440561 Rosa chinensis HOM05D000983 ORTHO05D006794 1.6e-10 72.4 317 24.9
Hund05909 Selenicereus undatus HOM05D000983 ORTHO05D006794 1.6e-10 72.4 296 25.7
CiPaw.06G081000 Carya illinoinensis HOM05D000983 ORTHO05D006794 2.1e-10 72.0 297 25.9
Migut.E00112 Erythranthe guttata HOM05D000983 ORTHO05D006794 2.1e-10 72.0 303 26.4
Lalb_Chr05g0230241 Lupinus albus HOM05D000983 ORTHO05D006794 2.1e-10 72.0 297 26.3
Manes.01G189800 Manihot esculenta HOM05D000983 ORTHO05D006794 2.1e-10 72.0 320 24.7
Nn3g17137 Nelumbo nucifera HOM05D000983 ORTHO05D006794 2.1e-10 72.0 317 24.9
Actinidia04020 Actinidia chinensis HOM05D000983 ORTHO05D006794 2.8e-10 71.6 363 24.8
Gohir.D12G170000 Gossypium hirsutum HOM05D000983 ORTHO05D006794 2.8e-10 71.6 322 24.8
Gorai.008G182600 Gossypium raimondii HOM05D000983 ORTHO05D006794 2.8e-10 71.6 303 25.4
Potri.010G092900 Populus trichocarpa HOM05D000983 ORTHO05D006794 2.8e-10 71.6 298 24.5
Thecc.08G007400 Theobroma cacao HOM05D000983 ORTHO05D001922 2.8e-10 71.6 305 24.9
arahy.Tifrunner.gnm1.ann1.FS95PS Arachis hypogaea HOM05D000983 ORTHO05D006794 3.6e-10 71.2 301 25.9
arahy.Tifrunner.gnm1.ann1.T04E6T Arachis hypogaea HOM05D000983 ORTHO05D006794 3.6e-10 71.2 301 25.9
FAN24G2118 Fragaria x ananassa HOM05D000983 ORTHO05D001237 3.6e-10 71.2 335 23.3
Gohir.D02G114700 Gossypium hirsutum HOM05D000983 ORTHO05D006794 3.6e-10 71.2 297 25.3
Phvul.003G069200 Phaseolus vulgaris HOM05D000983 ORTHO05D006794 3.6e-10 71.2 297 25.6
SMO361G0115 Selaginella moellendorffii HOM05D000983 ORTHO05D001922 3.6e-10 71.2 309 24.9
SMO361G0191 Selaginella moellendorffii HOM05D000983 ORTHO05D001922 3.6e-10 71.2 309 24.9
TPR.G33281 Trifolium pratense HOM05D000983 ORTHO05D006794 3.6e-10 71.2 334 24.0
VMungo0251G1110 Vigna mungo HOM05D000983 ORTHO05D006794 3.6e-10 71.2 306 25.8
Dinv24958 Davidia involucrata HOM05D000983 ORTHO05D006794 4.7e-10 70.9 303 25.7
arahy.Tifrunner.gnm1.ann1.DYUN2H Arachis hypogaea HOM05D000983 ORTHO05D006794 6.2e-10 70.5 339 25.7
EL10Ac9g21309 Beta vulgaris HOM05D000983 ORTHO05D001922 6.2e-10 70.5 307 22.5
CDE04G0949 Ceratophyllum demersum HOM05D000983 ORTHO05D006794 6.2e-10 70.5 289 26.6
Cre08.g385500 Chlamydomonas reinhardtii HOM05D000983 ORTHO05D001922 6.2e-10 70.5 317 24.3
COL.COLO4_26508 Corchorus olitorius HOM05D000983 ORTHO05D001922 6.2e-10 70.5 301 23.3
Glyma.02G020500 Glycine max HOM05D000983 ORTHO05D006794 6.2e-10 70.5 299 25.8
DCAR_027388 Daucus carota HOM05D000983 ORTHO05D006794 8.1e-10 70.1 319 24.1
SalBow2G3062 Salvia bowleyana HOM05D000983 ORTHO05D006794 8.1e-10 70.1 301 26.6
arahy.Tifrunner.gnm1.ann1.X74CZZ Arachis hypogaea HOM05D000983 ORTHO05D006794 1.1e-09 69.7 339 25.7
AUR62005729 Chenopodium quinoa HOM05D000983 ORTHO05D006794 1.1e-09 69.7 345 24.6
FvH4_4g31910 Fragaria vesca HOM05D000983 ORTHO05D006794 1.1e-09 69.7 317 24.6
FAN12G0310 Fragaria x ananassa HOM05D000983 ORTHO05D006794 1.1e-09 69.7 317 24.6
Manes.05G097100 Manihot esculenta HOM05D000983 ORTHO05D006794 1.1e-09 69.7 301 24.9
Nitab4.5_0000287g0310 Nicotiana tabacum HOM05D000983 ORTHO05D001922 1.1e-09 69.7 273 24.5
Sed0014431 Sechium edule HOM05D000983 ORTHO05D006794 1.1e-09 69.7 301 25.9
CSS0016919 Camellia sinensis var. sinensis HOM05D000983 ORTHO05D006794 1.4e-09 69.3 318 23.9
Cfa009029 Carpinus fangiana HOM05D000983 ORTHO05D006794 1.4e-09 69.3 295 25.4
PSO591G0257 Papaver somniferum HOM05D000983 ORTHO05D006794 1.4e-09 69.3 317 23.3
PSO832G2404 Papaver somniferum HOM05D000983 ORTHO05D006794 1.4e-09 69.3 317 23.3
THA.LOC104822100 Tarenaya hassleriana HOM05D000983 ORTHO05D006794 1.4e-09 69.3 319 22.6
TWI36G1755 Tripterygium wilfordii HOM05D000983 ORTHO05D006794 1.4e-09 69.3 294 23.8
AagrBONN_evm.TU.Sc2ySwM_228.1041 Anthoceros agrestis HOM05D000983 ORTHO05D001922 1.8e-09 68.9 323 26.6
AUR62028831 Chenopodium quinoa HOM05D000983 ORTHO05D006794 1.8e-09 68.9 327 24.5
Ciclev10030661m.g Citrus clementina HOM05D000983 ORTHO05D006794 1.8e-09 68.9 297 25.6
Oeu040122.2 Olea europaea HOM05D000983 ORTHO05D006794 1.8e-09 68.9 298 25.2
Phvul.002G065700 Phaseolus vulgaris HOM05D000983 ORTHO05D006794 1.8e-09 68.9 298 24.5
Zm00001eb255870 Zea mays HOM05D000983 ORTHO05D001922 1.8e-09 68.9 311 22.5
Psat4g132240 Pisum sativum HOM05D000983 ORTHO05D006794 3.1e-09 68.2 332 23.5
arahy.Tifrunner.gnm1.ann1.A2NH4I Arachis hypogaea HOM05D000983 ORTHO05D001922 4.0e-09 67.8 302 22.2
arahy.Tifrunner.gnm1.ann1.ZINR5T Arachis hypogaea HOM05D000983 ORTHO05D001922 4.0e-09 67.8 302 22.2
CBR_g31563 Chara braunii HOM05D001348 ORTHO05D034333 4.0e-09 67.8 217 24.4
Gohir.D05G205300 Gossypium hirsutum HOM05D000983 ORTHO05D001922 4.0e-09 67.8 313 25.2
Lj8A319T58 Lonicera japonica HOM05D000983 ORTHO05D001922 4.0e-09 67.8 315 22.9
CAN.G279.13 Capsicum annuum HOM05D000983 ORTHO05D006794 5.2e-09 67.4 323 23.5
Cfa009028 Carpinus fangiana HOM05D000983 ORTHO05D006794 5.2e-09 67.4 345 24.9
CiPaw.05G139400 Carya illinoinensis HOM05D000983 ORTHO05D006794 5.2e-09 67.4 298 24.2
CDE06G2643 Ceratophyllum demersum HOM05D000983 ORTHO05D006794 5.2e-09 67.4 371 22.4
Duzib093G1978 Durio zibethinus HOM05D000983 ORTHO05D001922 5.2e-09 67.4 300 23.0
Duzib251G0295 Durio zibethinus HOM05D000983 ORTHO05D006794 5.2e-09 67.4 287 26.5
PSO478G1338 Papaver somniferum HOM05D000983 ORTHO05D006794 5.2e-09 67.4 303 24.8
CSS0035472 Camellia sinensis var. sinensis HOM05D000983 ORTHO05D006794 6.8e-09 67.0 319 23.2
Haze_12057 Corylus avellana HOM05D000983 ORTHO05D006794 6.8e-09 67.0 298 24.5
Lj4g0022586 Lotus japonicus HOM05D000983 ORTHO05D006794 6.8e-09 67.0 264 27.3
PSO675G1408 Papaver somniferum HOM05D000983 ORTHO05D001922 6.8e-09 67.0 287 22.3
Sc04g0008440 Simmondsia chinensis HOM05D000983 ORTHO05D006794 6.8e-09 67.0 296 23.0
Thecc.08G007500 Theobroma cacao HOM05D000983 ORTHO05D001922 6.8e-09 67.0 346 23.1
EL10Ac9g21313 Beta vulgaris HOM05D000983 ORTHO05D001922 8.9e-09 66.6 189 27.5
Nn5g30319 Nelumbo nucifera HOM05D000983 ORTHO05D001922 8.9e-09 66.6 307 23.5
VMungo1215G1269 Vigna mungo HOM05D000983 ORTHO05D006794 8.9e-09 66.6 296 24.0
AagrBONN_evm.TU.Sc2ySwM_117.70 Anthoceros agrestis HOM05D000983 ORTHO05D001922 1.2e-08 66.2 280 27.5
Duzib248G1546 Durio zibethinus HOM05D000983 ORTHO05D006794 1.2e-08 66.2 355 24.5
Nitab4.5_0003280g0040 Nicotiana tabacum HOM05D000983 ORTHO05D001922 1.2e-08 66.2 297 23.9
Peaxi162Scf00174g00137 Petunia axillaris HOM05D000983 ORTHO05D001922 1.2e-08 66.2 301 22.6
FAN07G2190 Fragaria x ananassa HOM05D000983 ORTHO05D006794 1.5e-08 65.9 319 23.8
Gohir.A01G119700 Gossypium hirsutum HOM05D000983 ORTHO05D001922 2.0e-08 65.5 303 23.4
Gohir.D01G108100 Gossypium hirsutum HOM05D000983 ORTHO05D001922 2.0e-08 65.5 353 22.9
Nitab4.5_0010498g0010 Nicotiana tabacum HOM05D000983 ORTHO05D006794 2.0e-08 65.5 323 23.5
PRCOL_00006963 Prasinoderma coloniale HOM05D000983 ORTHO05D001922 2.0e-08 65.5 340 23.5
PGR031G0893 Punica granatum HOM05D000983 ORTHO05D001922 2.0e-08 65.5 339 22.4
TAR371G0512 Trochodendron aralioides HOM05D000983 ORTHO05D006794 2.0e-08 65.5 200 29.5
Cfa009027 Carpinus fangiana HOM05D000983 ORTHO05D006794 2.6e-08 65.1 303 24.8
Lj6C74T13 Lonicera japonica HOM05D000983 ORTHO05D006794 2.6e-08 65.1 222 27.0
Mapoly0033s0036 Marchantia polymorpha HOM05D000983 ORTHO05D001922 2.6e-08 65.1 302 23.2
Solyc05g007070.2 Solanum lycopersicum HOM05D000983 ORTHO05D006794 2.6e-08 65.1 323 23.2
Sopen05g003040 Solanum pennellii HOM05D000983 ORTHO05D006794 2.6e-08 65.1 323 23.2
Zm00001eb154950 Zea mays HOM05D000983 ORTHO05D006794 2.6e-08 65.1 300 24.3
Cpa.g.sc5.271 Carica papaya HOM05D000983 ORTHO05D006794 3.4e-08 64.7 326 24.2
Peaxi162Scf00209g00331 Petunia axillaris HOM05D000983 ORTHO05D006794 3.4e-08 64.7 323 23.5
PRCOL_00003870 Prasinoderma coloniale HOM05D001026 ORTHO05D003027 3.4e-08 64.7 239 29.3
Gohir.A03G098400 Gossypium hirsutum HOM05D000983 ORTHO05D006794 4.4e-08 64.3 302 25.2
FAN22G1876 Fragaria x ananassa HOM05D000983 ORTHO05D006794 5.8e-08 63.9 197 28.4
SGA_v2.0_scaffold302G47859 Striga asiatica HOM05D000983 ORTHO05D006794 5.8e-08 63.9 268 26.9
PRCOL_00006340 Prasinoderma coloniale HOM05D001026 ORTHO05D003027 7.6e-08 63.5 233 27.9
SMO197G0007 Selaginella moellendorffii HOM05D000983 ORTHO05D001922 7.6e-08 63.5 279 22.9
MCO13G310 Micromonas commoda HOM05D000983 ORTHO05D006794 9.9e-08 63.2 154 33.8
Gorai.002G132300 Gossypium raimondii HOM05D000983 ORTHO05D001922 1.7e-07 62.4 353 22.7
Ah.02g131280 Amaranthus hybridus HOM05D000983 ORTHO05D006794 2.2e-07 62.0 280 25.7
CBR_g17035 Chara braunii HOM05D000983 ORTHO05D006794 2.2e-07 62.0 300 24.7
Cc10_g00640 Coffea canephora HOM05D001348 ORTHO05D002788 2.2e-07 62.0 145 28.3
CBR_g55382 Chara braunii HOM05D001026 ORTHO05D003935 2.9e-07 61.6 174 25.3
CBR_g3299 Chara braunii HOM05D001348 ORTHO05D002788 3.8e-07 61.2 145 26.9
vmacro16327 Vaccinium macrocarpon HOM05D000983 ORTHO05D006794 3.8e-07 61.2 344 23.8
THA.LOC104825424 Tarenaya hassleriana HOM05D001348 ORTHO05D002788 1.1e-06 59.7 136 28.7
Os06g0726400 Oryza sativa ssp. japonica HOM05D001348 ORTHO05D002788 1.4e-06 59.3 136 29.4
Dinv31946 Davidia involucrata HOM05D001348 ORTHO05D002788 1.9e-06 58.9 136 28.7
MBI08_g24272_MAGBIO Magnolia biondii HOM05D001348 ORTHO05D002788 1.9e-06 58.9 152 27.0
QL02p014252 Quercus lobata HOM05D001348 ORTHO05D002788 2.4e-06 58.5 136 28.7
CANSAT25G0108 Cannabis sativa HOM05D001348 ORTHO05D002788 3.2e-06 58.2 136 28.7
GSVIVG01008673001 Vitis vinifera HOM05D001348 ORTHO05D002788 3.2e-06 58.2 136 28.7
DCAR_013916 Daucus carota HOM05D001348 ORTHO05D002788 4.1e-06 57.8 136 27.9
Lj8A319T60 Lonicera japonica HOM05D000983 ORTHO05D001922 4.1e-06 57.8 183 24.0
Gohir.A02G084500 Gossypium hirsutum HOM05D001348 ORTHO05D002788 5.4e-06 57.4 136 27.9
Gohir.D02G100400 Gossypium hirsutum HOM05D001348 ORTHO05D002788 5.4e-06 57.4 136 27.9
Gorai.005G113800 Gossypium raimondii HOM05D001348 ORTHO05D002788 5.4e-06 57.4 136 27.9
Cre03.g155001 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D003027 7.1e-06 57.0 142 31.0
Atru.chr13.139 Acer truncatum HOM05D001348 ORTHO05D002788 9.2e-06 56.6 136 27.9
Aqoxy6G01706 Aquilegia oxysepala HOM05D001348 ORTHO05D002788 9.2e-06 56.6 136 27.9
AUR62036860 Chenopodium quinoa HOM05D001348 ORTHO05D002788 9.2e-06 56.6 136 27.2
Lj8A321G36 Lonicera japonica HOM05D000983 ORTHO05D001922 9.2e-06 56.6 199 24.6


User provided reference genes

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