Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 5.9e-236 820.5 409 100.0
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 1.3e-38 164.9 245 42.4
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 5.1e-22 109.8 245 35.9
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 1.3e-20 105.1 227 34.4
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 2.2e-20 104.4 211 35.5
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 2.8e-20 104.0 226 34.5
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 2.8e-20 104.0 231 34.2
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 6.3e-20 102.8 231 34.2
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 8.2e-20 102.4 211 35.5
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 8.2e-20 102.4 242 33.9
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 1.1e-19 102.1 239 33.5
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 1.1e-19 102.1 243 34.2
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 1.4e-19 101.7 211 35.5
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 1.4e-19 101.7 209 34.4
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 1.4e-19 101.7 229 32.8
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 1.4e-19 101.7 220 35.5
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 1.8e-19 101.3 229 33.2
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 1.8e-19 101.3 233 33.5
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 1.8e-19 101.3 241 33.2
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 1.8e-19 101.3 241 33.2
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 2.4e-19 100.9 231 32.9
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 2.4e-19 100.9 231 34.2
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 4.1e-19 100.1 212 35.8
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 6.9e-19 99.4 239 33.5
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 6.9e-19 99.4 229 32.8
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 6.9e-19 99.4 226 34.1
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 9.0e-19 99.0 241 33.6
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 9.0e-19 99.0 248 35.5
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 9.0e-19 99.0 220 34.5
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 1.2e-18 98.6 227 33.5
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 1.5e-18 98.2 226 35.8
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 1.5e-18 98.2 228 33.8
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 2.0e-18 97.8 209 35.4
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 2.0e-18 97.8 229 33.6
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 2.0e-18 97.8 245 33.5
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 2.0e-18 97.8 212 33.5
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 2.0e-18 97.8 243 32.9
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 2.6e-18 97.4 236 33.5
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 3.4e-18 97.1 218 33.5
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 3.4e-18 97.1 212 34.4
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 3.4e-18 97.1 211 34.6
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 4.5e-18 96.7 229 32.8
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 4.5e-18 96.7 230 33.0
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 4.5e-18 96.7 260 32.3
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 5.9e-18 96.3 228 33.8
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 5.9e-18 96.3 320 31.9
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 5.9e-18 96.3 219 33.8
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 5.9e-18 96.3 211 34.6
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 5.9e-18 96.3 237 32.5
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 5.9e-18 96.3 245 33.5
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 5.9e-18 96.3 231 32.0
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 7.7e-18 95.9 245 33.1
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 7.7e-18 95.9 237 35.0
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 7.7e-18 95.9 233 33.0
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 1.0e-17 95.5 209 32.5
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 1.0e-17 95.5 209 32.1
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 1.0e-17 95.5 241 32.8
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 1.7e-17 94.7 221 33.9
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 1.7e-17 94.7 211 33.6
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 1.7e-17 94.7 211 33.6
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 2.2e-17 94.4 242 32.6
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 3.8e-17 93.6 235 31.9
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 3.8e-17 93.6 231 32.5
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 3.8e-17 93.6 227 32.6
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 3.8e-17 93.6 241 31.5
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 3.8e-17 93.6 254 30.7
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 3.8e-17 93.6 211 33.6
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 6.5e-17 92.8 231 32.0
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 8.5e-17 92.4 211 32.7
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 8.5e-17 92.4 209 32.5
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 1.1e-16 92.0 253 31.2
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 1.1e-16 92.0 231 32.0
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 1.1e-16 92.0 226 31.9
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 1.1e-16 92.0 226 31.9
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 1.1e-16 92.0 210 31.4
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 1.4e-16 91.7 230 33.5
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 1.4e-16 91.7 230 33.5
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 1.4e-16 91.7 230 33.5
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 1.4e-16 91.7 231 31.6
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 1.4e-16 91.7 228 31.6
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 1.9e-16 91.3 241 31.1
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 1.9e-16 91.3 241 31.1
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 2.5e-16 90.9 229 32.3
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 3.2e-16 90.5 229 32.3
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 3.2e-16 90.5 209 32.5
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 4.2e-16 90.1 229 32.3
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 5.5e-16 89.7 236 31.8
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 7.2e-16 89.4 221 33.5
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 7.2e-16 89.4 194 32.0
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 3.6e-15 87.0 209 32.5
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 6.1e-15 86.3 204 32.8
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 6.1e-15 86.3 211 31.8
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 7.9e-15 85.9 209 32.1
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 1.8e-14 84.7 218 31.7
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 3.9e-14 83.6 209 31.6
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 1.5e-13 81.6 227 30.0
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 1.7e-12 78.2 186 32.3
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 4.8e-12 76.6 242 28.5
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 4.1e-11 73.6 194 28.9
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 1.5e-10 71.6 205 31.2
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 7.7e-10 69.3 198 29.3
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.3e-09 68.6 200 27.5
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 1.7e-09 68.2 184 28.8
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 1.7e-09 68.2 180 28.9
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.2e-09 67.8 180 28.9
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 5.0e-09 66.6 194 26.8
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 6.5e-09 66.2 180 28.3
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 6.5e-09 66.2 193 27.5
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 1.1e-08 65.5 194 26.8
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.4e-08 65.1 194 26.3
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 1.4e-08 65.1 184 28.3
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.4e-08 65.1 180 28.3
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 1.9e-08 64.7 192 27.1
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 1.9e-08 64.7 180 27.8
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 2.5e-08 64.3 184 27.7
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 2.5e-08 64.3 183 28.4
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 2.5e-08 64.3 188 28.2
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 2.5e-08 64.3 211 25.6
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 3.2e-08 63.9 136 36.0
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 3.2e-08 63.9 180 27.8
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 5.5e-08 63.2 195 26.7
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 5.5e-08 63.2 194 26.3
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 5.5e-08 63.2 183 29.0
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 5.5e-08 63.2 192 25.5
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 9.4e-08 62.4 192 27.1
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 9.4e-08 62.4 125 36.8
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 9.4e-08 62.4 180 28.3
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 9.4e-08 62.4 183 28.4
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 1.2e-07 62.0 230 24.8
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 1.2e-07 62.0 184 26.6
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 1.6e-07 61.6 192 26.0
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 1.6e-07 61.6 197 25.9
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 2.1e-07 61.2 191 27.7
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 2.7e-07 60.8 184 26.6
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 2.7e-07 60.8 185 26.5
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 4.7e-07 60.1 199 25.6
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 4.7e-07 60.1 184 26.1
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 6.1e-07 59.7 199 25.6
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 6.1e-07 59.7 185 29.7
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 6.1e-07 59.7 187 26.7
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 7.9e-07 59.3 184 26.1
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 7.9e-07 59.3 185 25.9
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 7.9e-07 59.3 183 27.9
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 1.0e-06 58.9 187 25.7
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 1.0e-06 58.9 182 25.3
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 1.0e-06 58.9 203 26.6
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 1.4e-06 58.5 185 27.0
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 1.4e-06 58.5 182 26.4
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 1.4e-06 58.5 185 25.9
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 1.8e-06 58.2 188 26.6
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 1.8e-06 58.2 186 27.4
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 1.8e-06 58.2 196 26.0
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 1.8e-06 58.2 182 26.4
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 2.3e-06 57.8 182 26.9
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 2.3e-06 57.8 205 26.8
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 3.0e-06 57.4 201 26.4
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 3.9e-06 57.0 180 27.2
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 3.9e-06 57.0 199 26.1
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 3.9e-06 57.0 185 25.4
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 5.1e-06 56.6 215 23.7
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 5.1e-06 56.6 189 25.4
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 5.1e-06 56.6 184 25.5
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 6.7e-06 56.2 181 27.1
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 8.8e-06 55.8 189 25.9
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 8.8e-06 55.8 182 25.8
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 8.8e-06 55.8 182 25.3


User provided reference genes

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