Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 7.3e-68 260.4 128 100.0
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 1.8e-37 159.5 127 59.1
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 1.9e-31 139.4 128 46.9
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 2.5e-31 139.0 122 54.9
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 3.2e-31 138.7 128 48.4
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 3.2e-31 138.7 128 49.2
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 3.2e-31 138.7 127 49.6
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 4.2e-31 138.3 128 46.1
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 4.2e-31 138.3 128 48.4
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 4.2e-31 138.3 128 46.9
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 5.5e-31 137.9 128 46.1
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 5.5e-31 137.9 128 49.2
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 7.2e-31 137.5 127 47.2
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 7.2e-31 137.5 128 48.4
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 7.2e-31 137.5 128 49.2
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 7.2e-31 137.5 128 48.4
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 9.4e-31 137.1 128 46.9
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 9.4e-31 137.1 128 48.4
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 9.4e-31 137.1 128 46.9
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 9.4e-31 137.1 128 48.4
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 9.4e-31 137.1 128 48.4
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 9.4e-31 137.1 128 47.7
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.2e-30 136.7 126 48.4
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 1.6e-30 136.3 128 45.3
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 1.6e-30 136.3 128 45.3
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 1.6e-30 136.3 128 45.3
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 1.6e-30 136.3 128 47.7
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 1.6e-30 136.3 128 47.7
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 2.1e-30 136.0 128 46.9
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 2.1e-30 136.0 128 47.7
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 2.1e-30 136.0 128 46.9
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 2.7e-30 135.6 128 45.3
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 2.7e-30 135.6 128 46.9
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 2.7e-30 135.6 128 47.7
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 2.7e-30 135.6 128 47.7
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 4.7e-30 134.8 128 47.7
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 4.7e-30 134.8 128 46.9
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 4.7e-30 134.8 128 47.7
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 6.1e-30 134.4 128 46.9
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 7.9e-30 134.0 128 46.1
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 7.9e-30 134.0 127 48.0
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 1.0e-29 133.7 128 46.1
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 1.0e-29 133.7 128 46.9
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 1.0e-29 133.7 128 46.9
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 1.0e-29 133.7 128 46.9
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 1.4e-29 133.3 128 45.3
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.4e-29 133.3 128 46.1
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 1.4e-29 133.3 128 46.1
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 1.4e-29 133.3 128 46.9
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.4e-29 133.3 128 46.9
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.4e-29 133.3 128 46.9
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 1.4e-29 133.3 128 45.3
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 1.4e-29 133.3 128 46.9
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 1.8e-29 132.9 128 45.3
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 1.8e-29 132.9 127 44.9
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 1.8e-29 132.9 128 46.9
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 1.8e-29 132.9 127 45.7
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 2.3e-29 132.5 128 45.3
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 2.3e-29 132.5 128 45.3
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 2.3e-29 132.5 128 45.3
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 2.3e-29 132.5 127 45.7
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 2.3e-29 132.5 128 46.1
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 2.3e-29 132.5 128 46.1
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 3.0e-29 132.1 127 45.7
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 3.9e-29 131.7 128 46.1
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 3.9e-29 131.7 128 45.3
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 3.9e-29 131.7 128 46.1
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 5.1e-29 131.3 128 45.3
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 5.1e-29 131.3 128 45.3
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 5.1e-29 131.3 115 48.7
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 5.1e-29 131.3 127 44.9
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 6.7e-29 131.0 127 45.7
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 6.7e-29 131.0 128 46.1
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 6.7e-29 131.0 128 46.9
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 8.8e-29 130.6 127 45.7
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 8.8e-29 130.6 128 45.3
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 8.8e-29 130.6 128 45.3
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 8.8e-29 130.6 128 43.8
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 1.1e-28 130.2 128 46.1
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 1.1e-28 130.2 128 44.5
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.1e-28 130.2 127 47.2
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 1.1e-28 130.2 128 45.3
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 1.5e-28 129.8 128 44.5
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 2.6e-28 129.0 128 44.5
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 2.6e-28 129.0 124 47.6
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 2.6e-28 129.0 136 44.9
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 3.3e-28 128.6 128 44.5
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 4.4e-28 128.3 128 47.7
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 4.4e-28 128.3 127 44.1
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 7.4e-28 127.5 128 45.3
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 2.2e-27 125.9 128 44.5
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 2.2e-27 125.9 129 45.7
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 1.1e-26 123.6 128 43.8
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 3.1e-26 122.1 122 43.4
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 3.1e-26 122.1 128 43.8
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 3.1e-26 122.1 115 46.1
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.1e-26 121.7 147 40.8
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 4.1e-26 121.7 129 45.0
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 1.2e-25 120.2 127 42.5
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 2.6e-25 119.0 141 41.1
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 3.5e-25 118.6 116 44.0
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 1.0e-24 117.1 119 43.7
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 2.2e-24 115.9 128 42.2
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 2.5e-23 112.5 118 43.2
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 1.2e-22 110.2 128 41.4
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 4.7e-22 108.2 128 43.8
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 1.8e-21 106.3 91 50.5
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.0e-21 105.1 91 49.5
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 5.2e-21 104.8 128 38.3
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 5.7e-20 101.3 113 38.1
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 8.2e-19 97.4 91 47.3
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 5.9e-17 91.3 128 36.7
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.3e-16 90.1 88 48.9
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 1.9e-15 86.3 75 48.0
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 1.9e-15 86.3 75 48.0
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 5.7e-12 74.7 117 36.8
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 7.5e-12 74.3 74 48.6
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 3.1e-10 68.9 57 45.6
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 4.1e-10 68.6 53 45.3
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 4.1e-10 68.6 73 41.1
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 9.1e-10 67.4 67 43.3
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 5.9e-09 64.7 53 45.3
Cre03.g208049 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D139805 1.0e-08 63.9 110 35.5
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 1.7e-08 63.2 62 40.3


User provided reference genes

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