Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G251 Micromonas commoda HOM05D007153 ORTHO05D008769 8.2e-143 510.4 259 100.0
Cre01.g007600 Chlamydomonas reinhardtii HOM05D007153 ORTHO05D008769 1.3e-31 141.0 227 39.6
Pp3c21_9340 Physcomitrium patens HOM05D002027 ORTHO05D007928 5.7e-19 99.0 227 32.6
BcaC08g43538 Brassica carinata HOM05D007153 ORTHO05D008769 9.8e-19 98.2 211 34.1
BolC6t36005H Brassica oleracea HOM05D007153 ORTHO05D008769 9.8e-19 98.2 211 34.1
C06p09270 Brassica napus HOM05D007153 ORTHO05D008769 1.7e-18 97.4 211 34.1
A06p00970 Brassica napus HOM05D007153 ORTHO05D008769 2.2e-18 97.1 210 34.3
BraA06t23324Z Brassica rapa HOM05D007153 ORTHO05D008769 2.8e-18 96.7 211 33.6
Pp3c10_20100 Physcomitrium patens HOM05D007153 ORTHO05D008769 6.3e-18 95.5 222 35.6
THA.LOC104810421 Tarenaya hassleriana HOM05D007153 ORTHO05D008769 6.3e-18 95.5 210 33.3
CsaV3_4G032710 Cucumis sativus L. HOM05D007153 ORTHO05D008769 8.3e-18 95.1 213 32.9
PSO832G0017 Papaver somniferum HOM05D007153 ORTHO05D008769 1.1e-17 94.7 211 32.7
BcaB07g33323 Brassica carinata HOM05D007153 ORTHO05D008769 1.4e-17 94.4 211 32.2
AUR62019681 Chenopodium quinoa HOM05D007153 ORTHO05D008769 1.4e-17 94.4 201 33.8
ClCG11G017050 Citrullus lanatus HOM05D007153 ORTHO05D008769 1.4e-17 94.4 215 32.6
Hund10387 Selenicereus undatus HOM05D007153 ORTHO05D008769 1.4e-17 94.4 240 32.5
HanXRQChr15g0495311 Helianthus annuus HOM05D007153 ORTHO05D008769 3.1e-17 93.2 206 34.0
MELO3C016680.2 Cucumis melo HOM05D007153 ORTHO05D008769 4.1e-17 92.8 213 31.9
Sp1g40050 Schrenkiella parvula HOM05D007153 ORTHO05D008769 4.1e-17 92.8 211 32.2
Mapoly0077s0003 Marchantia polymorpha HOM05D007153 ORTHO05D008769 5.4e-17 92.4 276 31.5
Ah.06g187590 Amaranthus hybridus HOM05D007153 ORTHO05D008769 7.0e-17 92.0 201 33.8
Eucgr.F01378 Eucalyptus grandis HOM05D007153 ORTHO05D008769 7.0e-17 92.0 221 33.5
PSO063G3995 Papaver somniferum HOM05D007153 ORTHO05D008769 7.0e-17 92.0 198 34.8
AUR62039568 Chenopodium quinoa HOM05D007153 ORTHO05D008769 1.2e-16 91.3 201 33.3
Migut.H02033 Erythranthe guttata HOM05D007153 ORTHO05D008769 1.2e-16 91.3 198 36.9
Peaxi162Scf00111g01220 Petunia axillaris HOM05D007153 ORTHO05D008769 1.2e-16 91.3 200 35.0
unitig_747.g21594 Utricularia gibba HOM05D007153 ORTHO05D008769 1.2e-16 91.3 223 31.8
Sabra11G0083600 Salix brachista HOM05D007153 ORTHO05D008769 1.6e-16 90.9 240 31.2
TWI38G0031 Tripterygium wilfordii HOM05D007153 ORTHO05D008769 1.6e-16 90.9 201 33.3
AL1G62070 Arabidopsis lyrata HOM05D007153 ORTHO05D008769 2.0e-16 90.5 211 31.8
Cc05_g10530 Coffea canephora HOM05D007153 ORTHO05D008769 2.7e-16 90.1 207 33.3
Psat1g008400 Pisum sativum HOM05D007153 ORTHO05D008769 2.7e-16 90.1 205 33.2
Solyc07g062030.3 Solanum lycopersicum HOM05D007153 ORTHO05D008769 2.7e-16 90.1 200 34.0
CARHR043760 Cardamine hirsuta HOM05D007153 ORTHO05D008769 3.5e-16 89.7 179 33.5
Carub.0001s4270 Capsella rubella HOM05D007153 ORTHO05D008769 4.5e-16 89.4 211 31.8
CDE07G0566 Ceratophyllum demersum HOM05D002027 ORTHO05D002544 4.5e-16 89.4 210 31.4
ECA236G0620 Erigeron canadensis HOM05D007153 ORTHO05D008769 4.5e-16 89.4 201 32.3
Pp3c11_25580 Physcomitrium patens HOM05D002027 ORTHO05D004229 4.5e-16 89.4 201 32.3
Sed0027291 Sechium edule HOM05D007153 ORTHO05D008769 4.5e-16 89.4 213 33.3
Sopen07g030290 Solanum pennellii HOM05D007153 ORTHO05D008769 4.5e-16 89.4 200 34.0
AT1G53520 Arabidopsis thaliana HOM05D007153 ORTHO05D008769 5.9e-16 89.0 215 32.1
Sc03g0010790 Simmondsia chinensis HOM05D007153 ORTHO05D008769 5.9e-16 89.0 201 34.8
Potri.011G101800 Populus trichocarpa HOM05D007153 ORTHO05D008769 7.7e-16 88.6 179 34.6
PGSC0003DMG400007056 Solanum tuberosum HOM05D007153 ORTHO05D008769 1.3e-15 87.8 200 34.0
GSVIVG01014069001 Vitis vinifera HOM05D007153 ORTHO05D008769 1.3e-15 87.8 205 32.2
arahy.Tifrunner.gnm1.ann1.57A972 Arachis hypogaea HOM05D007153 ORTHO05D008769 1.7e-15 87.4 203 32.5
CANSAT56G2533 Cannabis sativa HOM05D007153 ORTHO05D008769 1.7e-15 87.4 208 33.2
Nitab4.5_0003618g0090 Nicotiana tabacum HOM05D007153 ORTHO05D008769 1.7e-15 87.4 210 33.3
Lsat_1_v5_gn_7_100481 Lactuca sativa HOM05D007153 ORTHO05D008769 2.3e-15 87.0 201 33.3
Mapoly0044s0117 Marchantia polymorpha HOM05D007153 ORTHO05D008769 2.3e-15 87.0 201 35.3
CAN.G375.63 Capsicum annuum HOM05D007153 ORTHO05D008769 2.9e-15 86.7 210 31.9
Hma1.2p1_0713F.1_g207790 Hydrangea macrophylla HOM05D007153 ORTHO05D008769 2.9e-15 86.7 197 35.0
Aa31LG10G1690 Aethionema arabicum HOM05D007153 ORTHO05D008769 3.8e-15 86.3 183 33.9
arahy.Tifrunner.gnm1.ann1.C8MR0W Arachis hypogaea HOM05D007153 ORTHO05D008769 5.0e-15 85.9 203 32.5
Dinv26693 Davidia involucrata HOM05D007153 ORTHO05D008769 6.6e-15 85.5 203 34.0
FAN25G3240 Fragaria x ananassa HOM05D007153 ORTHO05D008769 6.6e-15 85.5 202 30.2
PGR083G2631 Punica granatum HOM05D007153 ORTHO05D008769 8.6e-15 85.1 196 33.7
TAR383G0615 Trochodendron aralioides HOM05D002027 ORTHO05D007928 8.6e-15 85.1 222 31.5
MD03G1252100 Malus domestica HOM05D007153 ORTHO05D008769 1.1e-14 84.7 235 29.8
Prupe.4G153500 Prunus persica HOM05D007153 ORTHO05D008769 1.1e-14 84.7 233 30.0
QL08p027831 Quercus lobata HOM05D007153 ORTHO05D008769 1.1e-14 84.7 201 31.8
Haze_08464 Corylus avellana HOM05D007153 ORTHO05D008769 1.5e-14 84.3 201 31.3
Ca_03417_v3 Cicer arietinum L. HOM05D007153 ORTHO05D008769 1.9e-14 84.0 203 32.5
Ca_29738_v3 Cicer arietinum L. HOM05D007153 ORTHO05D008769 1.9e-14 84.0 203 32.5
Nn3g20646 Nelumbo nucifera HOM05D007153 ORTHO05D008769 1.9e-14 84.0 201 32.8
Nn6g35623 Nelumbo nucifera HOM05D002027 ORTHO05D007928 1.9e-14 84.0 205 32.2
Thhalv10011696m.g Eutrema salsugineum HOM05D007153 ORTHO05D008769 2.5e-14 83.6 211 31.8
TPR.G6902 Trifolium pratense HOM05D007153 ORTHO05D008769 2.5e-14 83.6 203 32.0
CANSAT25G2836 Cannabis sativa HOM05D002027 ORTHO05D007928 4.2e-14 82.8 225 30.7
Gorai.013G176000 Gossypium raimondii HOM05D007153 ORTHO05D008769 4.2e-14 82.8 179 34.6
MBI07_g07830_MAGBIO Magnolia biondii HOM05D007153 ORTHO05D008769 4.2e-14 82.8 205 32.7
Rhsim06G0187600 Rhododendron simsii HOM05D007153 ORTHO05D008769 4.2e-14 82.8 201 31.8
VMungo1080G0806 Vigna mungo HOM05D007153 ORTHO05D008769 4.2e-14 82.8 205 32.7
CiPaw.11G154200 Carya illinoinensis HOM05D007153 ORTHO05D008769 5.5e-14 82.4 235 28.1
COL.COLO4_17448 Corchorus olitorius HOM05D007153 ORTHO05D008769 5.5e-14 82.4 207 32.9
FvH4_3g17350 Fragaria vesca HOM05D007153 ORTHO05D008769 5.5e-14 82.4 202 29.2
Gohir.D13G155400 Gossypium hirsutum HOM05D007153 ORTHO05D008769 5.5e-14 82.4 179 34.6
Lj1A822T45 Lonicera japonica HOM05D007153 ORTHO05D008769 9.5e-14 81.6 198 34.8
Lj3g0020060 Lotus japonicus HOM05D007153 ORTHO05D008769 9.5e-14 81.6 203 33.0
Ciclev10021578m.g Citrus clementina HOM05D007153 ORTHO05D008769 1.2e-13 81.3 201 31.8
Gohir.D06G079600 Gossypium hirsutum HOM05D002027 ORTHO05D007928 1.2e-13 81.3 215 31.2
Medtr2g072510 Medicago truncatula HOM05D007153 ORTHO05D008769 1.2e-13 81.3 201 33.3
Phvul.001G037700 Phaseolus vulgaris HOM05D002027 ORTHO05D007928 1.2e-13 81.3 215 31.2
vmacro11989 Vaccinium macrocarpon HOM05D007153 ORTHO05D008769 1.2e-13 81.3 179 33.0
Thecc.07G140300 Theobroma cacao HOM05D007153 ORTHO05D008769 1.6e-13 80.9 198 32.8
arahy.Tifrunner.gnm1.ann1.82L1EP Arachis hypogaea HOM05D002027 ORTHO05D007928 2.1e-13 80.5 214 30.4
arahy.Tifrunner.gnm1.ann1.AYFT4X Arachis hypogaea HOM05D002027 ORTHO05D007928 2.1e-13 80.5 214 30.4
MD11G1273600 Malus domestica HOM05D007153 ORTHO05D008769 2.1e-13 80.5 193 31.6
SGA_v2.0_scaffold130G34251 Striga asiatica HOM05D007153 ORTHO05D008769 2.1e-13 80.5 201 32.8
VMungo0647G0809 Vigna mungo HOM05D002027 ORTHO05D007928 2.1e-13 80.5 215 30.7
Glyma.13G262500 Glycine max HOM05D007153 ORTHO05D008769 2.8e-13 80.1 203 31.5
Gorai.010G092800 Gossypium raimondii HOM05D002027 ORTHO05D007928 2.8e-13 80.1 215 31.2
TAR636G2984 Trochodendron aralioides HOM05D002027 ORTHO05D007928 2.8e-13 80.1 215 32.1
CSS0012595 Camellia sinensis var. sinensis HOM05D007153 ORTHO05D008769 3.6e-13 79.7 198 32.8
Prupe.1G403200 Prunus persica HOM05D002027 ORTHO05D007928 3.6e-13 79.7 206 30.6
ClCG05G015810 Citrullus lanatus HOM05D002027 ORTHO05D007928 4.7e-13 79.3 217 30.4
Glyma.15G242900 Glycine max HOM05D007153 ORTHO05D008769 6.1e-13 79.0 198 32.3
Phvul.005G064500 Phaseolus vulgaris HOM05D007153 ORTHO05D008769 6.1e-13 79.0 213 31.5
RcHm_v2.0_Chr5g0028871 Rosa chinensis HOM05D007153 ORTHO05D008769 6.1e-13 79.0 219 29.2
THA.LOC104803709 Tarenaya hassleriana HOM05D002027 ORTHO05D007928 6.1e-13 79.0 212 30.7
DCAR_017582 Daucus carota HOM05D007153 ORTHO05D008769 8.0e-13 78.6 204 31.9
Mapoly0058s0114 Marchantia polymorpha HOM05D002027 ORTHO05D007928 8.0e-13 78.6 214 29.0
Sopen08g016820 Solanum pennellii HOM05D002027 ORTHO05D007928 8.0e-13 78.6 211 29.4
COL.COLO4_21153 Corchorus olitorius HOM05D002027 ORTHO05D007928 1.0e-12 78.2 226 30.5
SMO200G0139 Selaginella moellendorffii HOM05D002027 ORTHO05D007928 1.0e-12 78.2 178 33.1
Solyc08g061480.3 Solanum lycopersicum HOM05D002027 ORTHO05D007928 1.0e-12 78.2 211 29.4
PGSC0003DMG400024394 Solanum tuberosum HOM05D002027 ORTHO05D007928 1.0e-12 78.2 211 29.4
Atru.chr2.1917 Acer truncatum HOM05D007153 ORTHO05D008769 1.4e-12 77.8 201 31.8
Cfa019490 Carpinus fangiana HOM05D007153 ORTHO05D008769 1.4e-12 77.8 201 30.8
CsaV3_4G036100 Cucumis sativus L. HOM05D002027 ORTHO05D007928 1.4e-12 77.8 219 31.1
Duzib213G0031 Durio zibethinus HOM05D007153 ORTHO05D008769 1.4e-12 77.8 198 31.3
RcHm_v2.0_Chr6g0311981 Rosa chinensis HOM05D002027 ORTHO05D007928 1.8e-12 77.4 206 29.6
MSTRG.14258 Avicennia marina HOM05D007153 ORTHO05D008769 2.3e-12 77.0 200 31.5
Psat6g021720 Pisum sativum HOM05D002027 ORTHO05D007928 2.3e-12 77.0 225 31.1
FvH4_2g30870 Fragaria vesca HOM05D002027 ORTHO05D007928 3.0e-12 76.6 206 29.6
Aa31LG5G9500 Aethionema arabicum HOM05D002027 ORTHO05D007016 4.0e-12 76.3 202 29.7
Glyma.14G098100 Glycine max HOM05D002027 ORTHO05D007928 4.0e-12 76.3 207 30.9
Zm00001eb373710 Zea mays HOM05D002027 ORTHO05D007928 4.0e-12 76.3 202 29.7
AUR62020283 Chenopodium quinoa HOM05D002027 ORTHO05D007928 5.2e-12 75.9 206 30.6
Atru.chr2.1920 Acer truncatum HOM05D007153 ORTHO05D008769 6.8e-12 75.5 201 30.8
Aqoxy7G01035 Aquilegia oxysepala HOM05D002027 ORTHO05D007928 6.8e-12 75.5 205 31.2
CiPaw.16G067400 Carya illinoinensis HOM05D002027 ORTHO05D007928 6.8e-12 75.5 215 29.3
Glyma.17G226600 Glycine max HOM05D002027 ORTHO05D007928 6.8e-12 75.5 216 30.6
FAN20G1907 Fragaria x ananassa HOM05D000120 ORTHO05D000068 8.9e-12 75.1 206 29.6
Lalb_Chr01g0016241 Lupinus albus HOM05D007153 ORTHO05D008769 8.9e-12 75.1 205 29.8
Sp4g06660 Schrenkiella parvula HOM05D002027 ORTHO05D007928 1.2e-11 74.7 204 29.9
Eucgr.C00737 Eucalyptus grandis HOM05D002027 ORTHO05D007928 1.5e-11 74.3 178 30.9
SEGI_28474 Sequoiadendron giganteum HOM05D002027 ORTHO05D004229 1.5e-11 74.3 213 28.2
Thecc.09G064800 Theobroma cacao HOM05D002027 ORTHO05D007928 2.6e-11 73.6 226 30.1
A04p20340 Brassica napus HOM05D002027 ORTHO05D007928 3.4e-11 73.2 202 29.7
BraA04t17613Z Brassica rapa HOM05D002027 ORTHO05D007928 3.4e-11 73.2 202 29.7
AUR62037722 Chenopodium quinoa HOM05D002027 ORTHO05D007928 4.4e-11 72.8 206 29.6
HanXRQChr10g0309891 Helianthus annuus HOM05D002027 ORTHO05D007928 9.8e-11 71.6 211 27.0
MD15G1048900 Malus domestica HOM05D002027 ORTHO05D007928 9.8e-11 71.6 178 31.5
EL10Ac4g08449 Beta vulgaris HOM05D007153 ORTHO05D008769 1.3e-10 71.2 162 32.7
Cpa.g.sc126.10 Carica papaya HOM05D002027 ORTHO05D007928 1.3e-10 71.2 215 27.4
Phvul.005G064600 Phaseolus vulgaris HOM05D007153 ORTHO05D008769 1.3e-10 71.2 205 30.2
BolC4t27137H Brassica oleracea HOM05D002027 ORTHO05D007928 1.7e-10 70.9 202 29.2
MD08G1072900 Malus domestica HOM05D002027 ORTHO05D007928 1.7e-10 70.9 205 29.3
Manes.03G054000 Manihot esculenta HOM05D002027 ORTHO05D007928 1.7e-10 70.9 214 27.1
BcaC02g08291 Brassica carinata HOM05D002027 ORTHO05D007928 2.2e-10 70.5 202 29.2
C04p56040 Brassica napus HOM05D002027 ORTHO05D007928 2.2e-10 70.5 202 29.2
Lalb_Chr14g0366421 Lupinus albus HOM05D002027 ORTHO05D007928 2.2e-10 70.5 180 32.2
Nn8g38643 Nelumbo nucifera HOM05D002027 ORTHO05D007928 2.2e-10 70.5 194 31.4
Aqoxy1G01815 Aquilegia oxysepala HOM05D007153 ORTHO05D008769 2.8e-10 70.1 198 28.8
EL10Ac2g02409 Beta vulgaris HOM05D002027 ORTHO05D007928 2.8e-10 70.1 180 30.6
MSTRG.11630 Avicennia marina HOM05D002027 ORTHO05D007928 3.7e-10 69.7 206 28.6
Os06g0203600 Oryza sativa ssp. japonica HOM05D002027 ORTHO05D007928 3.7e-10 69.7 203 28.1
Gohir.D07G018900 Gossypium hirsutum HOM05D002027 ORTHO05D007928 8.3e-10 68.6 226 27.9
Sabra02G0042300 Salix brachista HOM05D002027 ORTHO05D004229 8.3e-10 68.6 201 29.4
Sabra18G0046200 Salix brachista HOM05D002027 ORTHO05D007928 8.3e-10 68.6 217 29.0
ATR0824G228 Amborella trichopoda HOM05D002027 ORTHO05D004229 1.1e-09 68.2 215 29.3
Carub.0004s0620 Capsella rubella HOM05D002027 ORTHO05D007928 1.1e-09 68.2 202 28.7
CARHR115240 Cardamine hirsuta HOM05D002027 ORTHO05D007928 1.1e-09 68.2 202 28.7
Ah.12g061280 Amaranthus hybridus HOM05D002027 ORTHO05D007928 1.4e-09 67.8 209 27.8
MBI19_g44268_MAGBIO Magnolia biondii HOM05D002027 ORTHO05D007928 1.4e-09 67.8 222 28.8
AL4G18930 Arabidopsis lyrata HOM05D002027 ORTHO05D007928 1.8e-09 67.4 202 28.7
AT2G26310 Arabidopsis thaliana HOM05D002027 ORTHO05D007928 1.8e-09 67.4 202 28.7
Os03g0819600 Oryza sativa ssp. japonica HOM05D003362 ORTHO05D003783 1.8e-09 67.4 186 29.6
Nitab4.5_0001140g0070 Nicotiana tabacum HOM05D007153 ORTHO05D008769 3.2e-09 66.6 143 32.2
SalBow4G0768 Salvia bowleyana HOM05D002027 ORTHO05D004229 5.4e-09 65.9 202 29.2
Manes.15G100200 Manihot esculenta HOM05D007153 ORTHO05D008769 1.2e-08 64.7 167 31.1
Potri.001G380700 Populus trichocarpa HOM05D007153 ORTHO05D008769 2.0e-08 63.9 175 32.0
Hund25572 Selenicereus undatus HOM05D002027 ORTHO05D007928 2.7e-08 63.5 216 27.8
Cpa.g.sc77.72 Carica papaya HOM05D007153 ORTHO05D008769 5.9e-08 62.4 140 30.0
BcaB06g28094 Brassica carinata HOM05D002027 ORTHO05D007928 2.3e-07 60.5 224 26.3
Zm00001eb062510 Zea mays HOM05D003362 ORTHO05D003783 2.3e-07 60.5 184 29.9
FAN24G3017 Fragaria x ananassa HOM05D002027 ORTHO05D007928 2.9e-07 60.1 214 28.5
FAN27G2495 Fragaria x ananassa HOM05D002027 ORTHO05D007928 2.9e-07 60.1 214 28.5
CDE04G0295 Ceratophyllum demersum HOM05D007153 ORTHO05D008769 3.9e-07 59.7 147 32.7
AagrBONN_evm.TU.Sc2ySwM_228.3568 Anthoceros agrestis HOM05D007153 ORTHO05D008769 5.0e-07 59.3 147 34.0
Sc11g0005840 Simmondsia chinensis HOM05D006808 ORTHO05D008610 6.6e-07 58.9 202 29.2
Gohir.A06G080100 Gossypium hirsutum HOM05D002027 ORTHO05D007928 8.6e-07 58.5 190 29.5
Sed0020055 Sechium edule HOM05D002027 ORTHO05D007928 1.9e-06 57.4 179 29.1
TAR624G0349 Trochodendron aralioides HOM05D000120 ORTHO05D007928 2.5e-06 57.0 191 30.9
A10p30920 Brassica napus HOM05D006808 ORTHO05D008610 4.3e-06 56.2 187 26.2
C09p71430 Brassica napus HOM05D006808 ORTHO05D008610 4.3e-06 56.2 187 26.2
BolC9t59906H Brassica oleracea HOM05D006808 ORTHO05D008610 4.3e-06 56.2 187 26.2
BraA10t45137Z Brassica rapa HOM05D006808 ORTHO05D008610 4.3e-06 56.2 187 26.2
Aa31LG11G6120 Aethionema arabicum HOM05D006808 ORTHO05D008610 7.3e-06 55.5 194 25.3
vmacro05869 Vaccinium macrocarpon HOM05D002027 ORTHO05D004229 7.3e-06 55.5 202 24.8


User provided reference genes

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