Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 1.3e-151 539.7 266 100.0
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.2e-90 336.3 258 67.4
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 2.2e-90 336.3 244 67.6
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 6.4e-90 334.7 262 62.2
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 2.4e-89 332.8 269 62.5
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 3.2e-89 332.4 263 62.7
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 9.2e-89 330.9 263 61.6
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 9.2e-89 330.9 263 62.0
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 1.6e-88 330.1 263 61.6
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 1.6e-88 330.1 263 62.0
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 2.0e-88 329.7 263 62.0
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 2.0e-88 329.7 263 62.0
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 2.7e-88 329.3 262 61.1
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 2.7e-88 329.3 263 61.2
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 2.7e-88 329.3 262 61.1
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 3.5e-88 328.9 263 61.6
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 4.6e-88 328.6 263 61.2
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 4.6e-88 328.6 263 61.2
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 4.6e-88 328.6 263 60.5
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 4.6e-88 328.6 265 61.5
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 4.6e-88 328.6 265 61.5
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 6.0e-88 328.2 264 61.7
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 6.0e-88 328.2 263 62.0
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 6.0e-88 328.2 263 61.2
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 1.0e-87 327.4 263 60.8
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 1.3e-87 327.0 259 62.5
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 1.3e-87 327.0 260 61.9
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 1.7e-87 326.6 263 60.5
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.3e-87 326.2 257 63.0
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 2.3e-87 326.2 263 61.2
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 3.0e-87 325.9 263 60.5
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 3.0e-87 325.9 263 60.8
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 3.0e-87 325.9 263 60.5
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.6e-87 324.7 265 61.1
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.6e-87 324.7 265 61.1
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.5e-86 323.6 263 60.5
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.5e-86 323.6 264 61.7
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.9e-86 323.2 263 60.8
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.9e-86 323.2 263 61.2
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 2.5e-86 322.8 263 60.5
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 2.5e-86 322.8 263 60.8
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 3.3e-86 322.4 265 59.2
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 5.6e-86 321.6 263 61.2
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.6e-86 321.6 265 60.4
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 7.3e-86 321.2 264 61.0
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 7.3e-86 321.2 264 61.0
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 7.3e-86 321.2 265 60.8
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 7.3e-86 321.2 263 60.1
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 7.3e-86 321.2 263 60.1
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 7.3e-86 321.2 263 60.8
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 9.5e-86 320.9 256 61.7
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.6e-85 320.1 263 59.7
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.1e-85 319.7 265 60.0
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 2.8e-85 319.3 264 60.6
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.8e-85 319.3 263 59.7
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 3.6e-85 318.9 263 60.5
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 3.6e-85 318.9 262 60.7
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 3.6e-85 318.9 272 59.9
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 3.6e-85 318.9 264 59.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 6.2e-85 318.2 262 58.8
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 6.2e-85 318.2 262 58.8
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 6.2e-85 318.2 262 60.7
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 6.2e-85 318.2 256 61.3
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 8.1e-85 317.8 264 59.1
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 8.1e-85 317.8 262 60.3
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 8.1e-85 317.8 264 59.8
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 1.1e-84 317.4 264 59.8
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 1.1e-84 317.4 263 60.5
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 1.4e-84 317.0 266 58.6
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.4e-84 317.0 263 58.9
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 1.8e-84 316.6 263 60.5
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 2.3e-84 316.2 263 60.8
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 2.3e-84 316.2 263 60.5
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 3.1e-84 315.8 263 59.3
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 3.1e-84 315.8 262 59.9
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 5.2e-84 315.1 253 61.7
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 6.8e-84 314.7 263 58.9
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 6.8e-84 314.7 263 60.1
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 6.8e-84 314.7 257 60.3
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 8.9e-84 314.3 259 59.8
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 1.7e-82 310.1 263 58.9
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 2.2e-82 309.7 264 59.1
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.9e-82 309.3 263 57.0
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 8.3e-82 307.8 263 57.4
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 8.3e-82 307.8 263 57.0
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.1e-81 307.4 266 56.8
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.1e-81 307.4 263 58.6
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 4.1e-81 305.4 266 56.0
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 5.4e-81 305.1 266 56.0
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 7.1e-81 304.7 265 59.2
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 9.2e-81 304.3 263 57.4
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 9.2e-81 304.3 263 57.0
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.6e-80 303.5 263 57.8
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 2.1e-80 303.1 245 60.0
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 2.1e-80 303.1 263 57.4
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 2.7e-80 302.8 308 52.3
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 3.5e-80 302.4 263 56.3
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 1.7e-79 300.1 260 57.7
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 4.3e-78 295.4 245 58.8
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 4.3e-78 295.4 245 58.8
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 5.6e-78 295.0 245 59.2
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 7.6e-75 284.6 254 56.3
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 3.5e-72 275.8 263 54.8
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 4.6e-72 275.4 262 55.0
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 4.6e-72 275.4 218 63.3
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 1.5e-70 270.4 231 60.2
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.5e-70 269.6 224 58.9
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.9e-66 256.1 252 55.2
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 4.2e-65 252.3 193 62.7
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 9.3e-65 251.1 266 48.9
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 2.7e-64 249.6 193 62.2
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 3.6e-61 239.2 193 61.1
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 6.2e-61 238.4 191 60.7
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 1.4e-60 237.3 197 59.9
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.3e-58 230.7 191 58.6
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 6.0e-56 221.9 174 63.2
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.3e-55 220.7 189 58.7
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 6.2e-45 185.3 208 50.0
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 8.2e-45 184.9 259 42.1
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 1.3e-37 161.0 190 46.8
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 2.2e-37 160.2 136 57.4
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.4e-36 156.8 257 37.7
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.8e-28 130.6 277 33.6
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 3.6e-24 116.3 323 29.7
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 7.4e-22 108.6 123 46.3
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 3.4e-19 99.8 80 58.8
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.0e-18 98.2 250 34.4
MCO15G348 Micromonas commoda HOM05D006171 ORTHO05D268671 6.1e-16 89.0 281 32.0
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 1.1e-14 84.7 64 60.9
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 9.4e-09 65.1 62 50.0


User provided reference genes

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