Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G534 Micromonas commoda HOM05D002591 ORTHO05D002791 2.1e-146 522.3 256 100.0
Peaxi162Scf00700g00038 Petunia axillaris HOM05D002591 ORTHO05D002791 2.7e-13 80.1 209 32.1
Solyc12g056250.2 Solanum lycopersicum HOM05D002591 ORTHO05D002791 2.7e-13 80.1 206 33.0
Sopen12g028770 Solanum pennellii HOM05D002591 ORTHO05D002791 2.7e-13 80.1 206 33.0
PGSC0003DMG400004977 Solanum tuberosum HOM05D002591 ORTHO05D002791 2.7e-13 80.1 195 33.3
ECA233G0711 Erigeron canadensis HOM05D002591 ORTHO05D002791 1.8e-12 77.4 172 36.0
Sopen08g029220 Solanum pennellii HOM05D002591 ORTHO05D002791 1.8e-12 77.4 246 29.7
Solyc08g080910.3 Solanum lycopersicum HOM05D002591 ORTHO05D002791 2.3e-12 77.0 246 29.7
CAN.G26.13 Capsicum annuum HOM05D002591 ORTHO05D002791 3.0e-12 76.6 208 33.7
Cc08_g14570 Coffea canephora HOM05D002591 ORTHO05D002791 3.9e-12 76.3 215 33.5
Lsat_1_v5_gn_6_6281 Lactuca sativa HOM05D002591 ORTHO05D002791 2.0e-11 73.9 168 34.5
Nitab4.5_0005149g0040 Nicotiana tabacum HOM05D002591 ORTHO05D002791 2.0e-11 73.9 208 31.7
ECA233G3838 Erigeron canadensis HOM05D002591 ORTHO05D002791 2.5e-11 73.6 198 31.3
ECA233G2591 Erigeron canadensis HOM05D002591 ORTHO05D002791 4.3e-11 72.8 211 31.8
Nitab4.5_0002776g0080 Nicotiana tabacum HOM05D002591 ORTHO05D002791 7.4e-11 72.0 209 31.6
HanXRQChr13g0394191 Helianthus annuus HOM05D002591 ORTHO05D002791 3.7e-10 69.7 168 33.3
Peaxi162Scf00102g01533 Petunia axillaris HOM05D002591 ORTHO05D002791 4.8e-10 69.3 163 35.6
Manes.01G062500 Manihot esculenta HOM05D002591 ORTHO05D002791 1.1e-09 68.2 164 32.3
CAN.G774.8 Capsicum annuum HOM05D002591 ORTHO05D002791 2.4e-09 67.0 204 31.4
Lsat_1_v5_gn_6_6141 Lactuca sativa HOM05D002591 ORTHO05D002791 3.1e-09 66.6 157 29.9
CAN.G774.6 Capsicum annuum HOM05D002591 ORTHO05D002791 4.1e-09 66.2 219 30.6
Cc08_g14530 Coffea canephora HOM05D002591 ORTHO05D002791 5.3e-09 65.9 220 30.5
Migut.A00776 Erythranthe guttata HOM05D002591 ORTHO05D002791 6.9e-09 65.5 202 28.2
Lj4g0009463 Lotus japonicus HOM05D002591 ORTHO05D002791 9.1e-09 65.1 230 28.7
Solyc08g080900.3 Solanum lycopersicum HOM05D002591 ORTHO05D002791 9.1e-09 65.1 204 30.9
HPP92_005046 Vanilla planifolia HOM05D002591 ORTHO05D002791 9.1e-09 65.1 197 28.4
CSS0042681 Camellia sinensis var. sinensis HOM05D002591 ORTHO05D002791 1.2e-08 64.7 169 32.5
Sopen08g029200 Solanum pennellii HOM05D002591 ORTHO05D002791 1.2e-08 64.7 203 30.5
Peaxi162Scf00119g00529 Petunia axillaris HOM05D002591 ORTHO05D002791 1.5e-08 64.3 203 31.5
TPR.G12850 Trifolium pratense HOM05D002591 ORTHO05D002791 1.5e-08 64.3 171 33.9
HPP92_005067 Vanilla planifolia HOM05D002591 ORTHO05D002791 1.5e-08 64.3 197 28.4
arahy.Tifrunner.gnm1.ann1.UZDQ9R Arachis hypogaea HOM05D002591 ORTHO05D002791 2.6e-08 63.5 162 31.5
DCAR_008404 Daucus carota HOM05D002591 ORTHO05D002791 2.6e-08 63.5 175 34.9
DCAR_018341 Daucus carota HOM05D000498 ORTHO05D000354 2.6e-08 63.5 204 28.4
DCAR_014507 Daucus carota HOM05D002143 ORTHO05D002260 4.5e-08 62.8 147 29.3
Gorai.008G246300 Gossypium raimondii HOM05D002591 ORTHO05D002791 4.5e-08 62.8 159 30.8
arahy.Tifrunner.gnm1.ann1.96WFPN Arachis hypogaea HOM05D002591 ORTHO05D002791 5.9e-08 62.4 184 29.9
AUR62010590 Chenopodium quinoa HOM05D002591 ORTHO05D002791 5.9e-08 62.4 210 30.0
Medtr8g098420 Medicago truncatula HOM05D002591 ORTHO05D002791 5.9e-08 62.4 159 31.4
Oeu059480.2 Olea europaea HOM05D002591 ORTHO05D002791 5.9e-08 62.4 214 29.4
Psat7g033760 Pisum sativum HOM05D002591 ORTHO05D002791 5.9e-08 62.4 159 32.7
Cfa012164 Carpinus fangiana HOM05D002591 ORTHO05D002791 7.7e-08 62.0 167 31.7
Gohir.D12G230100 Gossypium hirsutum HOM05D002591 ORTHO05D002791 7.7e-08 62.0 159 30.8
Glyma.05G206900 Glycine max HOM05D002591 ORTHO05D002791 1.0e-07 61.6 224 26.8
CiPaw.04G049300 Carya illinoinensis HOM05D000498 ORTHO05D000354 1.3e-07 61.2 177 27.7
Manes.02G022900 Manihot esculenta HOM05D002591 ORTHO05D002791 1.3e-07 61.2 159 32.7
Prupe.5G098100 Prunus persica HOM05D002591 ORTHO05D002791 1.7e-07 60.8 160 32.5
Thecc.03G277200 Theobroma cacao HOM05D002591 ORTHO05D002791 1.7e-07 60.8 163 33.1
Glyma.05G207000 Glycine max HOM05D002591 ORTHO05D002791 2.2e-07 60.5 170 32.4
Migut.E01103 Erythranthe guttata HOM05D002591 ORTHO05D002791 2.9e-07 60.1 210 31.4
Phvul.002G288600 Phaseolus vulgaris HOM05D002591 ORTHO05D002791 2.9e-07 60.1 168 31.5
VMungo0251G2356 Vigna mungo HOM05D002591 ORTHO05D002791 2.9e-07 60.1 164 31.7
Medtr8g098430 Medicago truncatula HOM05D002591 ORTHO05D002791 3.8e-07 59.7 229 27.1
Ciclev10021879m.g Citrus clementina HOM05D002591 ORTHO05D002791 5.0e-07 59.3 166 31.9
Duzib068G1346 Durio zibethinus HOM05D002591 ORTHO05D002791 5.0e-07 59.3 163 31.9
FAN04G0091 Fragaria x ananassa HOM05D002591 ORTHO05D002791 5.0e-07 59.3 165 33.9
Hund11481 Selenicereus undatus HOM05D002591 ORTHO05D002791 5.0e-07 59.3 169 32.0
CARHR213180 Cardamine hirsuta HOM05D002591 ORTHO05D002791 6.5e-07 58.9 158 31.0
DCAR_004645 Daucus carota HOM05D002591 ORTHO05D002791 6.5e-07 58.9 180 31.7
Duzib084G1180 Durio zibethinus HOM05D002591 ORTHO05D002791 6.5e-07 58.9 169 30.8
Eucgr.D01861 Eucalyptus grandis HOM05D002591 ORTHO05D002791 6.5e-07 58.9 166 32.5
Gorai.007G023300 Gossypium raimondii HOM05D002591 ORTHO05D002791 6.5e-07 58.9 169 31.4
ATR0680G212 Amborella trichopoda HOM05D002591 ORTHO05D002791 8.5e-07 58.5 161 31.7
Cc08_g14560 Coffea canephora HOM05D002591 ORTHO05D002791 8.5e-07 58.5 82 40.2
Lj4g0020288 Lotus japonicus HOM05D002591 ORTHO05D002791 8.5e-07 58.5 169 31.4
Sopen06g003840 Solanum pennellii HOM05D000498 ORTHO05D000354 8.5e-07 58.5 204 25.0
Ca_17542_v3 Cicer arietinum L. HOM05D002591 ORTHO05D002791 1.1e-06 58.2 161 31.1
Gohir.A11G022200 Gossypium hirsutum HOM05D002591 ORTHO05D002791 1.1e-06 58.2 169 31.4
Hma1.2p1_2132F.1_g314760 Hydrangea macrophylla HOM05D002591 ORTHO05D002791 1.1e-06 58.2 158 32.9
Psat7g033800 Pisum sativum HOM05D002591 ORTHO05D002791 1.1e-06 58.2 174 30.5
SMO367G0945 Selaginella moellendorffii HOM05D002591 ORTHO05D002791 1.1e-06 58.2 198 28.3
arahy.Tifrunner.gnm1.ann1.F8I3MF Arachis hypogaea HOM05D002591 ORTHO05D002791 1.4e-06 57.8 185 29.7
FAN08G2864 Fragaria x ananassa HOM05D002591 ORTHO05D002791 1.4e-06 57.8 165 33.3
FAN13G0230 Fragaria x ananassa HOM05D002591 ORTHO05D002791 1.4e-06 57.8 165 33.3
Sed0013646 Sechium edule HOM05D002591 ORTHO05D002791 1.4e-06 57.8 170 32.4
Solyc06g009040.4 Solanum lycopersicum HOM05D000498 ORTHO05D000354 1.4e-06 57.8 167 25.7
Ciclev10021831m.g Citrus clementina HOM05D002591 ORTHO05D002791 1.9e-06 57.4 163 31.9
COL.COLO4_34446 Corchorus olitorius HOM05D000474 ORTHO05D006736 1.9e-06 57.4 169 29.6
FvH4_5g02100 Fragaria vesca HOM05D002591 ORTHO05D002791 1.9e-06 57.4 160 31.9
FAN18G2033 Fragaria x ananassa HOM05D002591 ORTHO05D002791 1.9e-06 57.4 160 31.9
MD06G1081000 Malus domestica HOM05D002591 ORTHO05D002791 3.2e-06 56.6 165 31.5
SMO367G0767 Selaginella moellendorffii HOM05D002591 ORTHO05D002791 3.2e-06 56.6 145 31.0
SGA_v2.0_scaffold118G32572 Striga asiatica HOM05D002143 ORTHO05D002260 3.2e-06 56.6 137 26.3
SGA_v2.0_scaffold385G50472 Striga asiatica HOM05D002591 ORTHO05D002791 3.2e-06 56.6 205 29.3
TPR.G12805 Trifolium pratense HOM05D002591 ORTHO05D002791 3.2e-06 56.6 102 34.3
AL7G48230 Arabidopsis lyrata HOM05D002591 ORTHO05D002791 4.2e-06 56.2 167 32.3
Cc08_g14540 Coffea canephora HOM05D002591 ORTHO05D002791 4.2e-06 56.2 206 28.6
Manes.02G023100 Manihot esculenta HOM05D002591 ORTHO05D002791 4.2e-06 56.2 164 31.7
Pp3c17_6080 Physcomitrium patens HOM05D000498 ORTHO05D000354 5.5e-06 55.8 174 28.2
Potri.001G105600 Populus trichocarpa HOM05D002591 ORTHO05D002791 5.5e-06 55.8 175 32.6
THA.LOC104823580 Tarenaya hassleriana HOM05D002591 ORTHO05D002791 5.5e-06 55.8 168 31.5
Glyma.12G165301 Glycine max HOM05D002143 ORTHO05D002260 7.2e-06 55.5 188 26.6
TWI81G0552 Tripterygium wilfordii HOM05D002591 ORTHO05D002791 7.2e-06 55.5 167 28.7
Lsat_1_v5_gn_7_64221 Lactuca sativa HOM05D002591 ORTHO05D002791 9.4e-06 55.1 161 32.3
Manes.01G062600 Manihot esculenta HOM05D002591 ORTHO05D002791 9.4e-06 55.1 164 31.1
SGA_v2.0_scaffold24G10614 Striga asiatica HOM05D002143 ORTHO05D002260 9.4e-06 55.1 137 25.5


User provided reference genes

Program Settings