Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 4.2e-226 787.7 407 100.0
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 7.6e-26 122.5 321 31.2
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 9.9e-26 122.1 320 30.6
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.4e-24 118.2 305 29.8
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 3.2e-24 117.1 286 29.0
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 7.1e-24 115.9 291 30.9
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 9.3e-24 115.5 286 27.3
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.6e-23 114.8 286 29.0
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 2.7e-23 114.0 286 29.0
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 2.7e-23 114.0 286 29.4
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 2.7e-23 114.0 282 29.4
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 6.0e-23 112.8 277 30.0
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.0e-23 112.8 283 31.1
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 7.9e-23 112.5 283 29.0
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 7.9e-23 112.5 272 29.0
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.3e-22 111.7 280 28.9
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 1.8e-22 111.3 273 30.4
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.3e-22 110.9 283 30.4
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.3e-22 110.9 283 30.4
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.3e-22 110.9 283 30.4
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 3.0e-22 110.5 283 30.4
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.0e-22 110.5 283 30.4
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 5.1e-22 109.8 289 27.3
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 5.1e-22 109.8 288 29.2
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 6.7e-22 109.4 284 29.2
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 6.7e-22 109.4 272 27.9
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 6.7e-22 109.4 283 27.9
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 6.7e-22 109.4 283 28.6
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 6.7e-22 109.4 293 29.7
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 8.7e-22 109.0 283 28.6
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 8.7e-22 109.0 272 27.6
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 8.7e-22 109.0 283 27.2
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 1.1e-21 108.6 287 27.9
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.5e-21 108.2 288 26.0
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.9e-21 107.8 290 27.6
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.9e-21 107.8 289 27.3
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 2.5e-21 107.5 272 29.0
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 3.3e-21 107.1 288 27.4
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 4.3e-21 106.7 288 27.4
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 5.6e-21 106.3 288 26.7
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 5.6e-21 106.3 272 29.4
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.6e-21 106.3 290 27.2
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 5.6e-21 106.3 286 27.6
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 5.6e-21 106.3 286 29.0
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 5.6e-21 106.3 288 25.3
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 9.6e-21 105.5 286 26.9
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 1.3e-20 105.1 286 26.9
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 1.3e-20 105.1 288 28.1
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.3e-20 105.1 290 27.2
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 1.3e-20 105.1 286 27.6
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 1.6e-20 104.8 286 29.0
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 2.1e-20 104.4 285 27.0
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 2.1e-20 104.4 272 28.3
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 2.1e-20 104.4 288 24.7
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 2.8e-20 104.0 285 25.3
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.8e-20 104.0 291 27.5
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 2.8e-20 104.0 288 27.8
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 3.7e-20 103.6 288 27.1
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 3.7e-20 103.6 288 26.7
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 3.7e-20 103.6 288 27.1
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.7e-20 103.6 286 29.0
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.8e-20 103.2 288 26.7
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 6.2e-20 102.8 288 27.1
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 6.2e-20 102.8 286 25.9
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 6.2e-20 102.8 290 29.3
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.2e-20 102.8 288 26.7
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.2e-20 102.8 288 26.7
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 6.2e-20 102.8 272 27.6
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 1.1e-19 102.1 286 27.3
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.1e-19 102.1 286 25.5
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 1.1e-19 102.1 272 28.7
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 1.4e-19 101.7 282 28.0
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 1.4e-19 101.7 289 26.6
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.8e-19 101.3 286 25.2
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.8e-19 101.3 272 28.3
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 1.8e-19 101.3 288 27.4
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 2.4e-19 100.9 287 26.1
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 2.4e-19 100.9 291 26.5
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 2.4e-19 100.9 282 27.7
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.4e-19 100.9 272 28.7
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 3.1e-19 100.5 286 25.2
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 3.1e-19 100.5 289 27.7
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.1e-19 100.5 288 26.7
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 4.0e-19 100.1 282 29.1
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.0e-19 100.1 272 27.2
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 5.3e-19 99.8 304 25.3
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 6.9e-19 99.4 288 25.0
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 6.9e-19 99.4 282 27.7
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 6.9e-19 99.4 285 28.4
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 9.0e-19 99.0 310 27.4
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 9.0e-19 99.0 272 29.4
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 1.2e-18 98.6 273 29.7
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.2e-18 98.6 288 27.1
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.5e-18 98.2 288 26.7
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.0e-18 97.8 282 25.5
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 2.6e-18 97.4 286 26.9
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.6e-18 97.4 304 25.0
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 3.4e-18 97.1 277 26.7
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 3.4e-18 97.1 282 26.6
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 3.4e-18 97.1 282 28.4
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.3e-17 95.1 274 27.7
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.7e-17 94.7 282 27.7
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 1.7e-17 94.7 296 25.0
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 1.7e-17 94.7 286 26.2
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 2.2e-17 94.4 288 25.3
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 2.2e-17 94.4 272 28.3
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 3.8e-17 93.6 295 25.4
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 3.8e-17 93.6 273 26.4
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 4.9e-17 93.2 282 26.2
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 8.4e-17 92.4 286 26.6
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.4e-16 91.7 293 24.9
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.9e-16 91.3 271 26.2
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 2.5e-16 90.9 353 23.8
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 4.2e-16 90.1 286 24.8
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.5e-16 89.7 284 25.7
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.6e-15 88.2 261 27.2
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 1.6e-15 88.2 222 27.5
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 3.9e-14 83.6 302 26.2
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 6.7e-14 82.8 302 25.8
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 5.7e-13 79.7 219 27.4
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 1.8e-11 74.7 283 21.6


User provided reference genes

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