Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 2.4e-165 585.5 311 100.0
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 4.8e-89 332.0 319 59.2
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 4.8e-89 332.0 303 60.1
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 6.3e-89 331.6 303 60.1
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 8.2e-89 331.3 318 58.8
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 4.1e-88 328.9 306 58.8
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 4.1e-88 328.9 303 59.4
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 4.1e-88 328.9 303 57.1
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.0e-87 326.6 318 57.2
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 2.0e-87 326.6 320 57.2
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 2.6e-87 326.2 320 56.6
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.5e-87 325.9 320 56.9
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 4.5e-87 325.5 320 57.2
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 4.5e-87 325.5 303 57.4
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 5.9e-87 325.1 305 57.7
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 7.7e-87 324.7 303 58.4
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 7.7e-87 324.7 303 58.7
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 7.7e-87 324.7 303 58.4
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 7.7e-87 324.7 305 57.7
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 1.0e-86 324.3 301 58.5
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 1.3e-86 323.9 303 58.7
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.3e-86 323.9 302 57.6
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 1.3e-86 323.9 303 57.4
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.3e-86 323.9 305 57.7
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.3e-86 323.9 301 56.8
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 1.7e-86 323.6 314 56.4
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 2.2e-86 323.2 318 55.7
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 2.2e-86 323.2 318 56.6
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 2.2e-86 323.2 304 57.9
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 2.9e-86 322.8 320 55.9
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 2.9e-86 322.8 303 57.1
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 3.8e-86 322.4 305 57.7
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 3.8e-86 322.4 304 57.6
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 6.5e-86 321.6 309 57.6
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 8.5e-86 321.2 318 56.0
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 8.5e-86 321.2 303 57.8
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 8.5e-86 321.2 318 55.3
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 1.1e-85 320.9 312 55.8
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.9e-85 320.1 306 57.5
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 2.5e-85 319.7 318 57.5
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 3.2e-85 319.3 302 57.3
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 4.2e-85 318.9 303 57.4
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 4.2e-85 318.9 303 57.1
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 5.5e-85 318.5 309 57.0
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 7.2e-85 318.2 303 56.1
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 7.2e-85 318.2 303 56.1
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 7.2e-85 318.2 304 56.9
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 7.2e-85 318.2 305 56.4
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 7.2e-85 318.2 303 57.1
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 9.4e-85 317.8 321 55.1
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 9.4e-85 317.8 301 57.8
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 9.4e-85 317.8 303 56.4
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.2e-84 317.4 305 56.1
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 2.7e-84 316.2 301 57.1
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.7e-84 316.2 303 56.8
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 3.6e-84 315.8 314 54.5
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 4.7e-84 315.5 314 55.7
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 4.7e-84 315.5 303 57.4
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 4.7e-84 315.5 303 56.8
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 6.1e-84 315.1 303 57.8
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 8.0e-84 314.7 305 56.4
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 1.0e-83 314.3 303 56.4
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 1.4e-83 313.9 316 55.4
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 1.4e-83 313.9 303 57.8
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.8e-83 313.5 303 57.1
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 2.3e-83 313.2 303 56.4
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 3.0e-83 312.8 328 53.7
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 3.0e-83 312.8 303 55.8
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 3.0e-83 312.8 316 55.7
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 4.0e-83 312.4 303 56.1
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 4.0e-83 312.4 318 54.4
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 6.8e-83 311.6 303 56.4
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 1.5e-82 310.5 301 57.1
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 2.0e-82 310.1 315 53.3
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 3.4e-82 309.3 303 56.1
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.4e-82 308.9 310 56.5
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.3e-81 307.4 310 56.1
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 1.7e-81 307.0 306 56.5
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.1e-80 304.3 328 54.6
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 4.1e-80 302.4 308 55.2
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 5.3e-80 302.0 321 53.3
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 9.1e-80 301.2 279 59.5
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 5.9e-79 298.5 344 50.3
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 1.7e-78 297.0 301 54.8
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.9e-78 296.2 339 50.4
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 3.8e-78 295.8 306 54.6
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 6.5e-78 295.0 302 54.3
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 8.5e-78 294.7 287 54.7
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.9e-77 293.5 290 55.5
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 7.2e-77 291.6 303 56.4
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 8.0e-76 288.1 284 53.9
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 7.5e-74 281.6 317 52.1
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 9.8e-74 281.2 364 47.3
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 5.4e-72 275.4 296 52.7
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 1.6e-71 273.9 304 53.3
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 2.9e-70 269.6 268 54.5
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 2.5e-69 266.5 305 51.1
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.1e-68 263.5 232 62.5
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 3.6e-68 262.7 259 56.8
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 3.6e-68 262.7 294 52.4
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.2e-66 257.7 262 53.4
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 2.6e-66 256.5 304 48.7
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 4.4e-66 255.8 277 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 9.8e-66 254.6 234 59.0
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 9.8e-66 254.6 265 51.7
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.9e-62 243.0 355 45.1
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 1.9e-61 240.4 303 48.5
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 9.8e-58 228.0 219 55.3
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 2.0e-55 220.3 221 53.4
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 8.3e-49 198.4 186 57.0
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 3.2e-48 196.4 180 58.3
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 8.1e-44 181.8 171 56.7
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 4.0e-43 179.5 277 39.4
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 4.0e-43 179.5 209 50.2
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.4e-40 170.2 151 57.0
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 1.6e-36 157.5 164 56.7
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 8.1e-36 155.2 190 44.7
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.1e-35 154.8 294 38.1
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.2e-26 124.8 118 55.1
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.2e-25 120.6 294 32.7
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.8e-25 119.8 144 49.3
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 8.7e-22 108.6 83 60.2
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 4.8e-20 102.8 221 37.1
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 2.6e-18 97.1 201 36.3
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 8.4e-17 92.0 93 50.5
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.3e-12 78.2 108 42.6
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 1.4e-11 74.7 85 45.9
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 5.8e-10 69.3 79 50.6
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.5e-08 63.9 105 47.6
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.2e-07 61.6 75 44.0
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 6.0e-07 59.3 84 44.0
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 1.0e-06 58.5 49 65.3


User provided reference genes

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