Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 2.5e-221 771.9 419 100.0
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 7.8e-34 149.1 409 31.8
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 9.5e-32 142.1 418 32.3
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 9.5e-32 142.1 418 32.3
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 6.2e-31 139.4 411 30.7
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 2.6e-29 134.0 411 30.4
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 4.4e-29 133.3 450 33.1
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 9.9e-29 132.1 415 28.9
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 6.4e-28 129.4 414 32.4
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 1.4e-27 128.3 420 32.6
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 2.4e-27 127.5 422 30.6
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 4.2e-27 126.7 409 32.3
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 5.4e-27 126.3 414 28.7
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 7.1e-27 125.9 420 31.7
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 9.2e-27 125.6 417 29.0
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.2e-26 125.2 420 32.1
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.2e-26 125.2 419 28.6
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.2e-26 125.2 409 29.1
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 1.6e-26 124.8 442 34.4
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 2.1e-26 124.4 420 31.4
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 2.1e-26 124.4 419 30.1
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 2.7e-26 124.0 410 30.0
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 3.5e-26 123.6 420 32.1
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 4.6e-26 123.2 420 29.8
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 4.6e-26 123.2 420 29.0
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 4.6e-26 123.2 418 30.1
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 4.6e-26 123.2 420 31.4
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 7.8e-26 122.5 419 29.6
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.0e-25 122.1 406 28.6
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 1.3e-25 121.7 411 31.6
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.7e-25 121.3 418 28.5
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 2.3e-25 120.9 409 28.9
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.0e-25 120.6 423 28.8
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.0e-25 120.6 427 30.7
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.0e-25 120.6 427 30.7
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 3.9e-25 120.2 423 28.6
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 3.9e-25 120.2 420 29.3
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 6.6e-25 119.4 421 29.2
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 6.6e-25 119.4 421 29.2
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 6.6e-25 119.4 423 28.6
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 6.6e-25 119.4 410 30.2
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 8.7e-25 119.0 416 28.4
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 8.7e-25 119.0 427 27.9
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.1e-24 118.6 409 28.6
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.1e-24 118.6 423 28.6
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.1e-24 118.6 422 29.6
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.1e-24 118.6 428 30.1
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.1e-24 118.6 421 28.5
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 1.5e-24 118.2 409 27.1
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.5e-24 117.5 410 28.5
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 2.5e-24 117.5 422 28.0
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 3.3e-24 117.1 423 30.0
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.3e-24 117.1 424 30.9
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 3.3e-24 117.1 412 29.9
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 4.3e-24 116.7 411 28.2
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 4.3e-24 116.7 419 30.5
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 5.6e-24 116.3 417 29.5
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 7.3e-24 115.9 416 28.6
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 7.3e-24 115.9 416 28.6
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 7.3e-24 115.9 421 28.7
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 9.6e-24 115.5 415 29.2
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.2e-23 115.2 423 29.3
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.2e-23 115.2 422 30.6
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.6e-23 114.8 417 28.8
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.6e-23 114.8 421 30.4
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 2.1e-23 114.4 410 29.3
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.1e-23 114.4 420 29.0
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.1e-23 114.4 409 30.6
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.1e-23 114.4 418 27.0
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 2.1e-23 114.4 416 28.6
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 2.8e-23 114.0 423 30.5
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 2.8e-23 114.0 422 29.9
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 3.6e-23 113.6 411 28.5
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 4.7e-23 113.2 420 28.6
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 4.7e-23 113.2 408 28.9
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 4.7e-23 113.2 417 27.3
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 6.2e-23 112.8 416 28.1
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 6.2e-23 112.8 419 29.4
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 6.2e-23 112.8 411 28.2
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 8.1e-23 112.5 410 29.8
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 8.1e-23 112.5 416 28.4
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 8.1e-23 112.5 419 29.1
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.1e-22 112.1 417 27.8
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.1e-22 112.1 412 30.1
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.1e-22 112.1 416 28.1
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.1e-22 112.1 420 27.4
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.4e-22 111.7 410 27.6
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.8e-22 111.3 421 27.3
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.4e-22 110.9 422 29.9
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 4.0e-22 110.2 414 30.0
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 6.9e-22 109.4 414 29.5
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 6.9e-22 109.4 423 27.4
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 9.0e-22 109.0 417 26.1
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.2e-21 108.6 418 30.1
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.5e-21 108.2 413 29.1
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 2.0e-21 107.8 391 31.5
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 3.4e-21 107.1 413 27.8
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 4.4e-21 106.7 413 27.1
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 4.4e-21 106.7 413 27.1
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 5.8e-21 106.3 421 27.3
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 5.8e-21 106.3 389 29.3
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 7.6e-21 105.9 427 26.5
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 7.6e-21 105.9 420 28.6
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 7.6e-21 105.9 414 28.5
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 7.6e-21 105.9 413 30.0
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 9.9e-21 105.5 424 28.3
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.3e-20 105.1 423 27.7
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 1.7e-20 104.8 415 27.2
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.7e-20 104.8 414 28.5
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 2.2e-20 104.4 420 26.7
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 4.9e-20 103.2 410 27.1
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 6.4e-20 102.8 415 29.4
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.1e-19 102.1 454 26.0
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.4e-19 101.7 410 27.3
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 7.1e-19 99.4 419 27.0
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.6e-18 98.2 445 24.9
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 2.7e-18 97.4 432 26.2
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 7.8e-18 95.9 420 26.0
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.0e-17 94.0 431 25.5
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.1e-16 92.0 418 26.6
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 1.6e-15 88.2 421 25.4
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.8e-15 87.4 427 30.0
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.1e-14 85.5 354 26.6
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 1.8e-14 84.7 367 30.5
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.4e-14 84.3 412 25.2
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 3.1e-14 84.0 224 30.8
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 5.3e-14 83.2 425 26.4
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 9.0e-14 82.4 351 28.2
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 7.6e-13 79.3 445 25.4
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.8e-12 77.0 523 23.3
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 4.9e-12 76.6 366 28.4
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 6.4e-12 76.3 417 28.5
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.4e-11 75.1 295 30.2
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.9e-11 74.7 367 25.9
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 7.9e-10 69.3 217 29.0
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 7.9e-10 69.3 458 25.8
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.3e-08 63.9 416 25.0
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 4.0e-06 57.0 402 26.6
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.3e-06 56.6 150 31.3
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 5.3e-06 56.6 106 43.4
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 6.9e-06 56.2 365 25.5


User provided reference genes

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