Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 1.2e-58 229.6 113 100.0
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 2.2e-23 112.5 96 58.3
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 1.4e-22 109.8 96 55.2
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.8e-22 109.4 95 53.7
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-21 106.3 103 48.5
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 3.9e-20 101.7 98 54.1
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 3.9e-20 101.7 98 49.0
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 4.3e-19 98.2 98 48.0
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 4.3e-19 98.2 96 50.0
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 5.6e-19 97.8 96 51.0
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 7.3e-19 97.4 97 49.5
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 7.3e-19 97.4 96 51.0
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 1.2e-18 96.7 96 47.9
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 1.2e-18 96.7 96 47.9
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.2e-18 96.7 96 49.0
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.2e-18 96.7 96 49.0
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.6e-18 96.3 96 46.9
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 2.1e-18 95.9 96 49.0
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 2.1e-18 95.9 96 49.0
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 2.1e-18 95.9 96 49.0
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 2.1e-18 95.9 96 49.0
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 2.1e-18 95.9 96 49.0
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 2.1e-18 95.9 96 49.0
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 3.6e-18 95.1 96 49.0
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 3.6e-18 95.1 96 49.0
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 4.7e-18 94.7 96 49.0
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.7e-18 94.7 96 49.0
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.7e-18 94.7 96 50.0
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.7e-18 94.7 96 49.0
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.7e-18 94.7 96 49.0
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 4.7e-18 94.7 98 45.9
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 4.7e-18 94.7 96 44.8
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 4.7e-18 94.7 96 47.9
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 6.2e-18 94.4 96 45.8
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 6.2e-18 94.4 98 46.9
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 6.2e-18 94.4 96 49.0
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 6.2e-18 94.4 96 47.9
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 8.0e-18 94.0 97 48.5
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.1e-17 93.6 96 49.0
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.1e-17 93.6 96 47.9
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.1e-17 93.6 96 46.9
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.4e-17 93.2 96 47.9
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.4e-17 93.2 96 49.0
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.4e-17 93.2 96 49.0
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 1.8e-17 92.8 96 47.9
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.8e-17 92.8 96 47.9
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.8e-17 92.8 96 47.9
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 1.8e-17 92.8 96 47.9
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 1.8e-17 92.8 96 47.9
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.8e-17 92.8 96 47.9
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.8e-17 92.8 96 47.9
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.8e-17 92.8 96 49.0
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 2.3e-17 92.4 96 47.9
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.3e-17 92.4 96 46.9
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 2.3e-17 92.4 96 45.8
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.3e-17 92.4 96 46.9
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 2.3e-17 92.4 96 46.9
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 2.3e-17 92.4 96 45.8
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 2.3e-17 92.4 96 46.9
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 2.3e-17 92.4 100 46.0
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 2.3e-17 92.4 96 46.9
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 3.1e-17 92.0 99 44.4
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 3.1e-17 92.0 99 44.4
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 3.1e-17 92.0 96 46.9
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 3.1e-17 92.0 96 46.9
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.1e-17 92.0 96 47.9
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 3.1e-17 92.0 96 47.9
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 3.1e-17 92.0 96 44.8
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 3.1e-17 92.0 96 45.8
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 3.1e-17 92.0 96 47.9
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 3.1e-17 92.0 96 47.9
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 3.1e-17 92.0 96 47.9
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 4.0e-17 91.7 96 47.9
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 4.0e-17 91.7 96 46.9
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 4.0e-17 91.7 96 46.9
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 4.0e-17 91.7 96 46.9
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 4.0e-17 91.7 96 46.9
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 4.0e-17 91.7 96 46.9
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 4.0e-17 91.7 100 46.0
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 5.2e-17 91.3 96 46.9
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 5.2e-17 91.3 96 46.9
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 6.8e-17 90.9 96 46.9
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 6.8e-17 90.9 96 46.9
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.8e-17 90.9 96 46.9
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.8e-17 90.9 96 46.9
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.8e-17 90.9 96 46.9
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 6.8e-17 90.9 96 44.8
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 8.9e-17 90.5 98 44.9
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 8.9e-17 90.5 96 45.8
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 8.9e-17 90.5 96 44.8
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 8.9e-17 90.5 96 44.8
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.2e-16 90.1 96 46.9
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 1.2e-16 90.1 96 46.9
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 1.2e-16 90.1 96 46.9
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.2e-16 90.1 98 46.9
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 1.5e-16 89.7 96 46.9
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 2.0e-16 89.4 96 44.8
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.6e-16 89.0 96 46.9
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 3.4e-16 88.6 96 44.8
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 3.4e-16 88.6 97 45.4
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 4.4e-16 88.2 96 44.8
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 4.4e-16 88.2 96 44.8
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 5.8e-16 87.8 95 48.4
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.7e-15 86.3 84 51.2
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 4.9e-15 84.7 88 47.7
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.9e-15 84.7 96 44.8
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 4.9e-15 84.7 96 42.7
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 6.4e-15 84.3 89 46.1
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 6.4e-15 84.3 89 46.1
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 6.4e-15 84.3 120 39.2
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 6.4e-15 84.3 86 52.3
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 8.3e-15 84.0 84 50.0
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.1e-14 83.6 97 47.4
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 2.4e-14 82.4 81 51.9
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.4e-14 82.4 84 47.6
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.4e-14 82.4 89 48.3
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 2.4e-14 82.4 117 39.3
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 3.2e-14 82.0 95 46.3
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 5.4e-14 81.3 84 47.6
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 7.0e-14 80.9 84 48.8
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.6e-13 79.7 96 43.8
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 2.0e-13 79.3 84 46.4
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 4.6e-13 78.2 84 45.2
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 3.9e-12 75.1 131 35.1
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 6.2e-10 67.8 67 46.3
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.1e-09 67.0 96 39.6
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 2.3e-09 65.9 67 46.3
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 6.8e-09 64.3 98 40.8
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 7.5e-08 60.8 70 42.9
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 6.4e-07 57.8 51 51.0
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 6.4e-07 57.8 61 47.5
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 8.3e-07 57.4 51 52.9
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 1.4e-06 56.6 53 49.1


User provided reference genes

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