Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 7.6e-153 543.9 292 100.0
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 4.0e-29 132.9 302 35.1
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 2.9e-27 126.7 302 33.1
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 5.6e-23 112.5 303 30.4
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 7.4e-23 112.1 303 30.0
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 2.8e-22 110.2 312 28.8
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 3.7e-22 109.8 306 31.7
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 6.2e-22 109.0 304 30.6
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 6.2e-22 109.0 302 30.1
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 8.2e-22 108.6 303 29.4
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.1e-21 108.2 303 31.0
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 1.4e-21 107.8 303 31.4
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.4e-21 107.8 318 29.9
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 3.1e-21 106.7 302 29.8
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 4.0e-21 106.3 303 29.4
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 5.3e-21 105.9 304 29.6
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 5.3e-21 105.9 300 30.0
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 5.3e-21 105.9 303 29.7
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 5.3e-21 105.9 302 29.5
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 5.3e-21 105.9 303 30.0
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 5.3e-21 105.9 303 28.7
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 6.9e-21 105.5 303 31.4
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 6.9e-21 105.5 302 28.5
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 1.2e-20 104.8 303 30.7
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.2e-20 104.8 303 30.7
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 1.2e-20 104.8 303 30.7
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 1.2e-20 104.8 303 30.0
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 1.2e-20 104.8 303 30.0
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 1.5e-20 104.4 305 30.2
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.0e-20 104.0 316 29.4
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 2.6e-20 103.6 303 28.4
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 2.6e-20 103.6 307 30.0
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 3.4e-20 103.2 303 29.0
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.5e-20 102.8 302 29.1
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 5.8e-20 102.4 303 30.0
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 5.8e-20 102.4 302 29.1
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 5.8e-20 102.4 306 29.4
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 7.6e-20 102.1 302 29.8
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 7.6e-20 102.1 303 29.0
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 7.6e-20 102.1 302 28.8
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 7.6e-20 102.1 294 29.6
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 1.0e-19 101.7 302 29.1
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 1.0e-19 101.7 303 30.0
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.0e-19 101.7 302 27.8
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.0e-19 101.7 306 30.4
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 1.0e-19 101.7 304 28.3
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.0e-19 101.7 303 28.7
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 1.0e-19 101.7 302 28.1
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.3e-19 101.3 303 29.0
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.7e-19 100.9 305 28.9
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 1.7e-19 100.9 305 28.5
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 2.2e-19 100.5 303 29.0
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 2.9e-19 100.1 305 29.5
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 3.8e-19 99.8 303 29.4
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 3.8e-19 99.8 303 28.1
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 3.8e-19 99.8 302 28.1
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 3.8e-19 99.8 305 30.2
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 4.9e-19 99.4 303 28.7
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 4.9e-19 99.4 303 30.4
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 4.9e-19 99.4 303 27.4
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 4.9e-19 99.4 303 28.1
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 6.5e-19 99.0 302 28.8
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 6.5e-19 99.0 302 27.8
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 6.5e-19 99.0 302 27.8
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 6.5e-19 99.0 302 27.8
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 6.5e-19 99.0 313 28.1
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 8.4e-19 98.6 302 28.5
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 8.4e-19 98.6 302 28.5
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 8.4e-19 98.6 306 30.7
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.1e-18 98.2 304 28.0
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 1.1e-18 98.2 304 28.3
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 1.1e-18 98.2 306 27.1
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.1e-18 98.2 302 27.8
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.4e-18 97.8 303 29.0
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 1.4e-18 97.8 302 27.8
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.4e-18 97.8 291 29.9
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.4e-18 97.8 303 30.7
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 1.9e-18 97.4 316 29.1
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 1.9e-18 97.4 297 29.0
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 2.5e-18 97.1 303 30.0
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.5e-18 97.1 303 28.4
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.2e-18 96.7 312 28.8
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.2e-18 96.7 312 28.8
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.2e-18 96.3 303 30.0
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 4.2e-18 96.3 298 29.2
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 4.2e-18 96.3 313 28.1
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 4.2e-18 96.3 302 27.5
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 7.1e-18 95.5 305 28.5
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 9.3e-18 95.1 303 28.7
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 9.3e-18 95.1 313 28.8
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.2e-17 94.7 302 27.2
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 1.6e-17 94.4 296 27.7
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.6e-17 94.4 303 27.7
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 2.1e-17 94.0 303 28.1
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 4.6e-17 92.8 302 27.5
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.6e-17 92.8 305 28.9
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 6.0e-17 92.4 303 28.1
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 7.9e-17 92.0 303 28.1
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 2.3e-16 90.5 309 27.2
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 3.0e-16 90.1 304 27.6
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 5.1e-16 89.4 311 27.0
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 8.7e-16 88.6 302 26.2
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.1e-15 88.2 291 29.6
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 2.5e-15 87.0 306 25.2
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 5.7e-15 85.9 186 30.6
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 9.7e-15 85.1 303 26.4
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 9.7e-15 85.1 291 29.6
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 1.6e-14 84.3 303 27.4
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 2.1e-14 84.0 290 27.2
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 4.8e-14 82.8 349 28.9
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 8.2e-14 82.0 311 26.0
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.1e-13 81.6 189 32.3
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 6.9e-13 79.0 293 27.0
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 4.5e-12 76.3 300 26.3
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.2e-10 69.7 187 31.0
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 7.9e-09 65.5 152 29.6
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 1.0e-08 65.1 175 28.6
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.0e-08 65.1 191 28.3
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 1.5e-07 61.2 294 23.8
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 7.4e-07 58.9 182 28.0
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 9.7e-07 58.5 127 31.5
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 2.2e-06 57.4 186 29.0


User provided reference genes

Program Settings