Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 8.5e-307 1056.2 544 100.0
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 1.6e-164 583.6 495 58.6
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 1.8e-163 580.1 490 59.6
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 2.3e-163 579.7 486 59.5
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 3.4e-162 575.9 486 59.9
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 1.3e-161 573.9 496 58.7
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 2.2e-161 573.2 486 58.4
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 3.7e-161 572.4 497 58.1
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 1.1e-160 570.9 499 58.5
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 2.4e-160 569.7 486 58.0
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 2.4e-160 569.7 486 58.0
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 3.1e-160 569.3 486 59.1
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 4.1e-160 568.9 486 58.2
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 5.4e-160 568.5 486 58.2
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 5.4e-160 568.5 486 59.3
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 7.0e-160 568.2 488 57.6
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 1.6e-159 567.0 486 59.3
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 1.6e-159 567.0 486 58.8
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 1.6e-159 567.0 512 57.0
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 2.0e-159 566.6 486 58.4
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 2.7e-159 566.2 486 58.2
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 2.7e-159 566.2 499 57.1
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 3.5e-159 565.8 486 58.2
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 3.5e-159 565.8 496 58.1
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 3.5e-159 565.8 486 57.4
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.5e-159 565.5 486 58.2
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 5.9e-159 565.1 486 58.2
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 7.7e-159 564.7 486 59.1
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 7.7e-159 564.7 497 57.1
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.3e-158 563.9 486 59.1
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 1.3e-158 563.9 486 57.6
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.3e-158 563.9 486 58.0
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 1.7e-158 563.5 486 58.0
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 2.3e-158 563.1 486 58.0
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 2.9e-158 562.8 486 58.6
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 2.9e-158 562.8 486 57.6
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 3.8e-158 562.4 486 58.4
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 3.8e-158 562.4 486 57.8
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 3.8e-158 562.4 486 57.4
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.8e-158 562.4 487 57.3
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 6.6e-158 561.6 486 58.4
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 6.6e-158 561.6 486 58.0
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 8.6e-158 561.2 486 57.4
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 8.6e-158 561.2 486 58.2
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.1e-157 560.8 486 58.4
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 1.1e-157 560.8 494 58.7
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 3.3e-157 559.3 498 57.2
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 4.2e-157 558.9 486 57.0
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 7.2e-157 558.1 486 57.0
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 1.2e-156 557.4 492 57.9
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 1.6e-156 557.0 486 57.8
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 1.6e-156 557.0 508 55.3
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 3.6e-156 555.8 492 57.9
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 4.7e-156 555.4 486 57.2
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 4.7e-156 555.4 486 57.0
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 4.7e-156 555.4 486 57.4
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 6.1e-156 555.1 486 57.4
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.0e-155 554.3 486 57.6
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.0e-155 554.3 507 56.6
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.4e-155 553.9 490 57.3
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 2.3e-155 553.1 486 57.0
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.3e-155 553.1 491 56.4
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 3.0e-155 552.7 487 56.5
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 3.0e-155 552.7 488 56.6
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 2.0e-154 550.1 495 56.0
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 2.6e-154 549.7 489 56.9
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.6e-154 549.7 494 55.5
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 3.4e-154 549.3 511 55.6
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 2.2e-153 546.6 527 54.5
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 6.3e-153 545.0 463 59.4
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 1.1e-152 544.3 518 53.7
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 1.8e-152 543.5 489 56.9
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 5.4e-152 542.0 486 56.2
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 2.0e-151 540.0 530 53.6
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.7e-151 539.7 491 55.6
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.7e-151 539.7 520 53.7
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 7.8e-151 538.1 509 54.2
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 2.9e-150 536.2 526 52.3
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 1.8e-147 526.9 599 48.6
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 4.0e-147 525.8 487 56.7
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 1.2e-146 524.2 462 57.8
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 7.0e-144 515.0 491 54.0
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 9.2e-144 514.6 502 55.0
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 1.1e-141 507.7 442 58.6
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 1.9e-141 506.9 447 58.2
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 1.2e-140 504.2 470 55.1
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 6.2e-140 501.9 478 53.8
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 8.0e-140 501.5 474 54.4
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 2.3e-139 500.0 500 53.0
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 7.5e-138 495.0 447 56.4
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 9.8e-138 494.6 432 59.3
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.3e-137 494.2 550 48.4
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 4.9e-137 492.3 532 48.7
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 5.4e-136 488.8 430 57.9
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 7.8e-135 485.0 425 56.9
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 9.5e-133 478.0 496 50.8
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 9.5e-133 478.0 486 50.8
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 2.3e-131 473.4 417 56.4
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 9.9e-130 468.0 520 49.2
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 1.5e-122 444.1 490 45.9
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 3.0e-118 429.9 426 52.6
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 1.6e-116 424.1 493 47.7
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 5.3e-115 419.1 509 46.0
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 5.1e-110 402.5 412 51.2
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 1.1e-109 401.4 486 45.3
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 1.9e-109 400.6 486 46.9
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.1e-104 384.8 343 56.3
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 6.9e-99 365.5 460 46.1
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 5.8e-98 362.5 367 52.0
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 6.7e-94 349.0 322 54.0
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.4e-91 341.3 322 53.4
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 3.8e-81 306.6 302 53.3
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 2.0e-77 294.3 495 37.4
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 7.4e-77 292.4 276 53.6
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 5.5e-72 276.2 395 43.3
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 6.1e-71 272.7 259 54.4
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 4.1e-67 260.0 447 36.9
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 4.2e-64 250.0 218 55.5
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 3.8e-49 200.3 211 48.8
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 5.5e-48 196.4 134 68.7
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 7.2e-48 196.1 135 68.9
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.6e-47 194.9 481 29.7
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 3.6e-47 193.7 184 50.5
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 3.6e-47 193.7 134 66.4
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 4.7e-47 193.4 134 67.2
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 8.0e-47 192.6 134 67.2
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.3e-46 191.0 364 35.4
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 4.1e-35 153.7 143 57.3
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 1.9e-32 144.8 226 41.2
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 7.3e-32 142.9 156 51.3
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 4.1e-27 127.1 132 47.7
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 1.7e-25 121.7 89 64.0
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 1.7e-25 121.7 89 64.0
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 9.8e-21 105.9 95 54.7
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.2e-19 100.9 68 70.6
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 3.6e-15 87.4 65 61.5
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 4.0e-14 84.0 73 56.2
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 1.2e-13 82.4 65 61.5
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 7.6e-13 79.7 52 65.4
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 2.2e-12 78.2 62 59.7
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 2.2e-12 78.2 135 40.0
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 8.4e-12 76.3 126 34.1
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 2.7e-10 71.2 47 66.0
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 2.3e-09 68.2 142 33.8
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 6.6e-09 66.6 103 39.8
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 1.9e-08 65.1 53 54.7
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 2.5e-08 64.7 97 39.2
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.3e-08 64.3 54 51.9


User provided reference genes

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