Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 0.0e+00 1247.3 680 100.0
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 2.4e-77 294.3 355 45.4
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.7e-60 237.7 289 45.7
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.0e-59 235.7 289 45.0
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 2.3e-59 234.6 293 44.7
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 3.0e-59 234.2 293 43.7
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 5.1e-59 233.4 291 44.3
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 5.1e-59 233.4 291 44.3
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 5.1e-59 233.4 293 44.7
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 8.7e-59 232.6 289 42.9
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.5e-58 231.9 296 42.2
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.3e-58 230.7 295 42.7
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 3.3e-58 230.7 293 44.0
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 3.3e-58 230.7 289 43.6
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 4.3e-58 230.3 299 43.8
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 5.6e-58 229.9 293 44.7
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.6e-58 229.9 295 42.7
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 9.6e-58 229.2 293 41.6
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.3e-57 228.8 299 43.8
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.3e-57 228.8 299 44.1
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 2.1e-57 228.0 292 42.5
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.8e-57 227.6 293 41.0
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 3.7e-57 227.3 293 43.3
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 3.7e-57 227.3 289 44.3
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 3.7e-57 227.3 289 42.6
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 4.8e-57 226.9 293 43.3
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 4.8e-57 226.9 293 42.3
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 4.8e-57 226.9 293 43.3
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 6.2e-57 226.5 293 43.0
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 6.2e-57 226.5 377 36.9
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.1e-56 225.7 289 44.3
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.1e-56 225.7 364 38.2
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.1e-56 225.7 289 43.6
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.8e-56 224.9 300 41.3
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.4e-56 224.6 396 37.1
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 3.1e-56 224.2 293 43.7
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 3.1e-56 224.2 289 43.6
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 3.1e-56 224.2 289 42.6
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 4.0e-56 223.8 295 41.4
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 4.0e-56 223.8 295 41.4
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 4.0e-56 223.8 289 41.5
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 4.0e-56 223.8 293 42.3
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 5.3e-56 223.4 295 41.4
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 5.3e-56 223.4 406 37.4
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 5.3e-56 223.4 293 42.0
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 6.9e-56 223.0 393 35.6
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.2e-55 222.2 296 40.9
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.5e-55 221.9 402 37.3
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.5e-55 221.9 293 44.0
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.5e-55 221.9 370 37.6
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.0e-55 221.5 289 43.9
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 2.0e-55 221.5 293 41.3
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 2.6e-55 221.1 287 42.9
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 2.6e-55 221.1 293 42.7
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 2.6e-55 221.1 293 42.3
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 4.5e-55 220.3 300 41.0
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 4.5e-55 220.3 300 41.0
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 4.5e-55 220.3 300 41.0
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 4.5e-55 220.3 300 41.0
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 4.5e-55 220.3 300 41.0
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 4.5e-55 220.3 287 43.6
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 5.8e-55 219.9 293 42.3
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.3e-54 218.8 292 41.4
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.3e-54 218.8 295 40.7
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.3e-54 218.8 295 40.7
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.3e-54 218.8 289 42.6
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.7e-54 218.4 307 39.4
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.2e-54 218.0 316 39.6
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.2e-54 218.0 293 42.0
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 2.2e-54 218.0 293 42.3
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 2.9e-54 217.6 316 38.6
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 2.9e-54 217.6 293 42.0
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 3.8e-54 217.2 289 41.5
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.8e-54 217.2 361 36.8
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.8e-54 217.2 373 38.3
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 6.5e-54 216.5 380 37.4
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 6.5e-54 216.5 407 36.1
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 8.4e-54 216.1 292 43.2
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 8.4e-54 216.1 293 41.6
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 1.1e-53 215.7 294 41.2
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.1e-53 215.7 361 38.0
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.4e-53 215.3 302 40.7
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 1.9e-53 214.9 316 39.2
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.9e-53 214.9 316 38.9
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 2.5e-53 214.5 295 40.3
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 2.5e-53 214.5 316 38.9
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 2.5e-53 214.5 316 39.2
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.5e-53 214.5 295 40.3
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 2.5e-53 214.5 293 41.6
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.5e-53 214.5 287 41.1
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 3.2e-53 214.2 289 42.6
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 3.2e-53 214.2 309 39.2
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 3.2e-53 214.2 287 41.1
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 3.2e-53 214.2 290 42.4
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 3.2e-53 214.2 293 39.9
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 4.2e-53 213.8 308 39.3
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.5e-53 213.4 309 38.8
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 7.1e-53 213.0 303 40.6
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 1.6e-52 211.8 402 34.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 2.1e-52 211.5 289 41.2
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 2.7e-52 211.1 411 34.1
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.7e-52 211.1 293 41.0
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 2.7e-52 211.1 296 39.9
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 2.7e-52 211.1 293 40.6
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 3.5e-52 210.7 250 47.2
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 4.6e-52 210.3 317 40.4
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 4.6e-52 210.3 293 41.3
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 7.9e-52 209.5 375 33.1
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 1.0e-51 209.1 293 41.0
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 1.3e-51 208.8 294 39.1
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.3e-51 208.8 293 41.0
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.8e-51 208.4 302 40.1
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 3.0e-51 207.6 297 39.7
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 5.1e-51 206.8 289 40.8
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 5.1e-51 206.8 401 35.9
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.5e-50 205.3 272 43.4
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.9e-50 204.9 320 37.2
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 2.5e-50 204.5 317 39.4
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 3.3e-50 204.1 413 32.9
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 5.7e-50 203.4 288 39.2
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 7.4e-50 203.0 400 34.2
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.3e-49 202.2 325 36.9
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.3e-49 202.2 281 40.9
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.6e-49 201.8 245 43.7
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 8.2e-49 199.5 293 37.9
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 1.1e-48 199.1 288 41.0
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.1e-48 199.1 270 40.7
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.8e-48 198.4 283 39.2
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 3.1e-48 197.6 400 33.2
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 4.1e-48 197.2 403 32.8
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 6.9e-48 196.4 416 33.2
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 9.0e-48 196.1 393 33.8
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.5e-47 195.3 287 37.6
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 7.7e-47 193.0 250 42.8
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.3e-46 192.2 492 31.1
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 6.5e-46 189.9 242 43.0
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.4e-43 182.2 236 41.9
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.5e-42 177.9 289 38.4
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.5e-39 168.7 390 32.6
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.1e-37 162.5 217 41.5
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 9.1e-32 142.9 159 45.9
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-31 142.5 159 45.9
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 9.7e-26 122.9 169 40.2
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 9.7e-18 96.3 282 28.0
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 5.5e-13 80.5 290 27.6
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 9.1e-08 63.2 129 33.3


User provided reference genes

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