Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G435 Micromonas commoda HOM05D003879 ORTHO05D003858 6.5e-65 251.1 187 100.0
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 2.0e-13 80.1 67 52.2
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.0e-13 80.1 67 52.2
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.0e-13 80.1 67 52.2
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 3.4e-13 79.3 67 52.2
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 4.4e-13 79.0 66 54.5
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 9.9e-13 77.8 59 55.9
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 1.7e-12 77.0 59 55.9
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 1.7e-12 77.0 59 55.9
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 1.7e-12 77.0 59 52.5
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 2.2e-12 76.6 58 58.6
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 2.2e-12 76.6 59 52.5
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 2.2e-12 76.6 59 54.2
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 2.9e-12 76.3 59 54.2
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 2.9e-12 76.3 59 54.2
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 2.9e-12 76.3 59 52.5
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 3.7e-12 75.9 67 50.7
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 3.7e-12 75.9 58 58.6
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 3.7e-12 75.9 59 52.5
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 4.9e-12 75.5 67 53.7
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 4.9e-12 75.5 59 54.2
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 6.4e-12 75.1 67 52.2
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 1.1e-11 74.3 59 54.2
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 1.1e-11 74.3 58 56.9
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 1.1e-11 74.3 67 52.2
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 1.1e-11 74.3 58 56.9
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.4e-11 73.9 59 52.5
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 1.4e-11 73.9 59 52.5
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 1.4e-11 73.9 66 48.5
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 1.4e-11 73.9 59 54.2
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 1.4e-11 73.9 67 52.2
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.4e-11 73.9 67 50.7
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 1.9e-11 73.6 58 53.4
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 1.9e-11 73.6 58 53.4
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 1.9e-11 73.6 59 52.5
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 1.9e-11 73.6 54 59.3
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 2.4e-11 73.2 67 52.2
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 2.4e-11 73.2 59 54.2
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 2.4e-11 73.2 59 54.2
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 2.4e-11 73.2 59 54.2
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 2.4e-11 73.2 67 52.2
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 3.2e-11 72.8 59 52.5
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 3.2e-11 72.8 58 53.4
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 3.2e-11 72.8 67 52.2
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.2e-11 72.8 59 54.2
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 3.2e-11 72.8 67 52.2
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 4.1e-11 72.4 58 56.9
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 4.1e-11 72.4 58 55.2
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 4.1e-11 72.4 58 55.2
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 4.1e-11 72.4 59 52.5
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 4.1e-11 72.4 59 52.5
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 4.1e-11 72.4 58 51.7
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 4.1e-11 72.4 58 51.7
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 5.4e-11 72.0 59 50.8
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 5.4e-11 72.0 58 53.4
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 5.4e-11 72.0 58 53.4
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 5.4e-11 72.0 58 53.4
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 5.4e-11 72.0 58 53.4
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 5.4e-11 72.0 58 53.4
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 5.4e-11 72.0 66 47.0
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 5.4e-11 72.0 58 53.4
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 5.4e-11 72.0 67 47.8
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 5.4e-11 72.0 67 49.3
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 7.1e-11 71.6 67 50.7
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 7.1e-11 71.6 67 50.7
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 7.1e-11 71.6 59 50.8
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 7.1e-11 71.6 59 50.8
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 7.1e-11 71.6 66 51.5
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 7.1e-11 71.6 58 53.4
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 7.1e-11 71.6 66 51.5
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 7.1e-11 71.6 58 53.4
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 7.1e-11 71.6 67 52.2
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 9.2e-11 71.2 67 50.7
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 1.2e-10 70.9 59 47.5
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 1.2e-10 70.9 58 55.2
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 1.6e-10 70.5 68 52.9
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 1.6e-10 70.5 58 53.4
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 1.6e-10 70.5 58 51.7
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 1.6e-10 70.5 59 52.5
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 1.6e-10 70.5 59 49.2
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 1.6e-10 70.5 59 49.2
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 1.6e-10 70.5 59 49.2
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 1.6e-10 70.5 58 50.0
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 1.6e-10 70.5 58 53.4
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 2.1e-10 70.1 59 50.8
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 2.1e-10 70.1 58 51.7
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 2.1e-10 70.1 58 55.2
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 2.1e-10 70.1 59 55.9
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 2.1e-10 70.1 58 51.7
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 2.1e-10 70.1 58 51.7
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 2.1e-10 70.1 58 53.4
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 2.7e-10 69.7 67 50.7
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 2.7e-10 69.7 58 51.7
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 2.7e-10 69.7 60 58.3
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 3.5e-10 69.3 58 53.4
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 3.5e-10 69.3 58 51.7
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 3.5e-10 69.3 59 52.5
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 3.5e-10 69.3 67 47.8
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 3.5e-10 69.3 66 51.5
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 4.6e-10 68.9 67 47.8
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 4.6e-10 68.9 58 50.0
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 4.6e-10 68.9 67 47.8
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 6.0e-10 68.6 58 53.4
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 6.0e-10 68.6 66 51.5
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 6.0e-10 68.6 59 52.5
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 7.8e-10 68.2 58 50.0
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 7.8e-10 68.2 58 51.7
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 7.8e-10 68.2 58 51.7
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.0e-09 67.8 65 50.8
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 1.0e-09 67.8 63 47.6
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-09 67.4 66 50.0
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 1.3e-09 67.4 66 50.0
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 1.3e-09 67.4 66 50.0
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 1.3e-09 67.4 66 50.0
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 1.3e-09 67.4 66 50.0
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 1.3e-09 67.4 59 49.2
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 1.7e-09 67.0 63 47.6
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 1.7e-09 67.0 66 50.0
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.7e-09 67.0 58 48.3
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.7e-09 67.0 59 47.5
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 2.3e-09 66.6 66 48.5
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 2.3e-09 66.6 67 46.3
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 2.3e-09 66.6 58 51.7
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 2.3e-09 66.6 58 51.7
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 2.3e-09 66.6 60 56.7
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 5.1e-09 65.5 58 48.3
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 6.6e-09 65.1 58 51.7
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 8.6e-09 64.7 53 50.9
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 8.6e-09 64.7 58 46.6
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 8.6e-09 64.7 58 46.6
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 1.1e-08 64.3 62 51.6
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 1.1e-08 64.3 54 50.0
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 1.1e-08 64.3 64 45.3
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 1.5e-08 63.9 56 50.0
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 1.5e-08 63.9 54 50.0
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 1.9e-08 63.5 59 45.8
SalBow1G6087 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.3e-08 62.8 55 50.9
SalBow6G3484 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.3e-08 62.8 55 50.9
SalBow6G4156 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.3e-08 62.8 55 50.9
SalBow8G1644 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.3e-08 62.8 55 50.9
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 5.6e-08 62.0 54 50.0
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 7.3e-08 61.6 54 50.0
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 7.3e-08 61.6 54 50.0
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.6e-07 60.5 68 44.1
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 2.1e-07 60.1 51 47.1
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 2.8e-07 59.7 57 47.4
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 4.7e-07 58.9 57 47.4
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 4.7e-07 58.9 57 47.4
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 4.7e-07 58.9 58 44.8
AT5G57570 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 8.1e-07 58.2 60 48.3
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 8.1e-07 58.2 53 47.2
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 2.4e-06 56.6 57 45.6
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 2.4e-06 56.6 57 45.6
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 2.4e-06 56.6 57 45.6
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 2.4e-06 56.6 57 45.6
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 2.4e-06 56.6 57 45.6
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 3.1e-06 56.2 49 46.9


User provided reference genes

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