Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G433 Micromonas commoda HOM05D006395 ORTHO05D007894 2.1e-106 389.4 260 100.0
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 1.3e-18 97.8 259 40.2
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 4.6e-16 89.4 112 40.2
MCO07G688 Micromonas commoda HOM05D006238 ORTHO05D007458 1.5e-14 84.3 262 34.4
Pp3c8_15530 Physcomitrium patens HOM05D006395 ORTHO05D007894 1.4e-12 77.8 91 42.9
MCO07G308 Micromonas commoda HOM05D006238 ORTHO05D007458 1.8e-12 77.4 260 44.6
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 7.5e-11 72.0 301 31.2
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 9.8e-11 71.6 112 34.8
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 8.3e-10 68.6 260 37.3
Phvul.006G072100 Phaseolus vulgaris HOM05D006395 ORTHO05D007894 1.1e-09 68.2 88 39.8
BcaC02g08055 Brassica carinata HOM05D006395 ORTHO05D007894 1.9e-09 67.4 257 38.1
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 1.9e-09 67.4 90 36.7
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 3.2e-09 66.6 261 29.1
HPP92_025106 Vanilla planifolia HOM05D006395 ORTHO05D007894 4.1e-09 66.2 85 43.5
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 5.4e-09 65.9 88 37.5
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 7.0e-09 65.5 259 30.1
CBR_g32352 Chara braunii HOM05D000019 ORTHO05D000002 9.2e-09 65.1 89 39.3
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 9.2e-09 65.1 83 39.8
Glyma.18G059000 Glycine max HOM05D006395 ORTHO05D007894 9.2e-09 65.1 87 40.2
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 9.2e-09 65.1 89 38.2
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 9.2e-09 65.1 89 38.2
Prupe.6G052000 Prunus persica HOM05D006395 ORTHO05D007894 9.2e-09 65.1 84 39.3
BcaB06g28340 Brassica carinata HOM05D006395 ORTHO05D007894 1.2e-08 64.7 87 36.8
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 1.6e-08 64.3 89 38.2
Lj6g0016849 Lotus japonicus HOM05D006395 ORTHO05D007894 1.6e-08 64.3 83 38.6
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 1.6e-08 64.3 83 41.0
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 2.1e-08 63.9 87 39.1
Glyma.11G166200 Glycine max HOM05D006395 ORTHO05D007894 2.1e-08 63.9 87 40.2
VMungo0540G1476 Vigna mungo HOM05D006395 ORTHO05D007894 2.1e-08 63.9 87 39.1
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 3.5e-08 63.2 87 36.8
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 4.6e-08 62.8 87 36.8
Lalb_Chr18g0051251 Lupinus albus HOM05D006395 ORTHO05D007894 4.6e-08 62.8 87 40.2
CDE12G0063 Ceratophyllum demersum HOM05D006395 ORTHO05D007894 6.0e-08 62.4 83 37.3
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 6.0e-08 62.4 90 38.9
A04p22790 Brassica napus HOM05D006395 ORTHO05D007894 7.8e-08 62.0 87 34.5
BolC4t27411H Brassica oleracea HOM05D006395 ORTHO05D007894 7.8e-08 62.0 87 34.5
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 7.8e-08 62.0 87 35.6
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 1.0e-07 61.6 276 39.9
Carub.0004s1124 Capsella rubella HOM05D006395 ORTHO05D007894 1.0e-07 61.6 256 36.7
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 1.0e-07 61.6 86 38.4
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 1.0e-07 61.6 88 36.4
BraA04t17818Z Brassica rapa HOM05D006395 ORTHO05D007894 1.3e-07 61.2 87 34.5
FvH4_3g39360 Fragaria vesca HOM05D006395 ORTHO05D007894 1.3e-07 61.2 87 37.9
FAN11G3343 Fragaria x ananassa HOM05D006395 ORTHO05D007894 1.3e-07 61.2 87 37.9
FAN25G1635 Fragaria x ananassa HOM05D006395 ORTHO05D007894 1.3e-07 61.2 87 37.9
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 1.3e-07 61.2 87 37.9
Actinidia27062 Actinidia chinensis HOM05D006395 ORTHO05D007894 1.7e-07 60.8 83 37.3
MD03G1062200 Malus domestica HOM05D006395 ORTHO05D007894 1.7e-07 60.8 84 35.7
BcaC02g08052 Brassica carinata HOM05D006395 ORTHO05D007894 2.3e-07 60.5 87 34.5
C04p58990 Brassica napus HOM05D006395 ORTHO05D007894 2.3e-07 60.5 87 34.5
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 2.3e-07 60.5 83 38.6
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 2.3e-07 60.5 72 43.1
Psat5g157120 Pisum sativum HOM05D006395 ORTHO05D007894 2.3e-07 60.5 87 37.9
THA.LOC104800755 Tarenaya hassleriana HOM05D006395 ORTHO05D007894 2.3e-07 60.5 87 34.5
Thecc.09G354500 Theobroma cacao HOM05D006395 ORTHO05D007894 2.3e-07 60.5 87 36.8
GSVIVG01024681001 Vitis vinifera HOM05D006395 ORTHO05D007894 2.3e-07 60.5 83 38.6
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 3.9e-07 59.7 72 43.1
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 3.9e-07 59.7 65 46.2
Cpa.g.sc2.390 Carica papaya HOM05D006395 ORTHO05D007894 5.0e-07 59.3 87 37.9
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 5.0e-07 59.3 72 40.3
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 5.0e-07 59.3 90 35.6
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 6.6e-07 58.9 66 40.9
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 6.6e-07 58.9 83 36.1
PSO170G0213 Papaver somniferum HOM05D006395 ORTHO05D007894 6.6e-07 58.9 90 36.7
RcHm_v2.0_Chr5g0070801 Rosa chinensis HOM05D006395 ORTHO05D007894 6.6e-07 58.9 88 38.6
Sp4g12670 Schrenkiella parvula HOM05D006395 ORTHO05D007894 6.6e-07 58.9 87 35.6
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 6.6e-07 58.9 83 39.8
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 6.6e-07 58.9 83 39.8
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 8.6e-07 58.5 72 40.3
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 8.6e-07 58.5 87 37.9
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 8.6e-07 58.5 87 37.9
Thhalv10016813m.g Eutrema salsugineum HOM05D006395 ORTHO05D007894 8.6e-07 58.5 87 34.5
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 8.6e-07 58.5 66 42.4
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 8.6e-07 58.5 72 40.3
PSO017G1403 Papaver somniferum HOM05D006395 ORTHO05D007894 8.6e-07 58.5 90 35.6
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 8.6e-07 58.5 90 33.3
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 1.1e-06 58.2 63 46.0
EL10Ac7g15889 Beta vulgaris HOM05D006395 ORTHO05D007894 1.1e-06 58.2 88 37.5
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 1.1e-06 58.2 83 39.8
Aqoxy1G01323 Aquilegia oxysepala HOM05D006395 ORTHO05D007894 1.5e-06 57.8 62 45.2
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 1.5e-06 57.8 68 41.2
HanXRQChr05g0130471 Helianthus annuus HOM05D006395 ORTHO05D007894 1.5e-06 57.8 55 49.1
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 1.5e-06 57.8 83 38.6
Potri.001G280500 Populus trichocarpa HOM05D006395 ORTHO05D007894 1.5e-06 57.8 83 37.3
Aa31LG5G6570 Aethionema arabicum HOM05D006395 ORTHO05D007894 1.9e-06 57.4 64 40.6
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 1.9e-06 57.4 87 36.8
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 1.9e-06 57.4 259 40.2
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 2.5e-06 57.0 66 42.4
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 2.5e-06 57.0 72 37.5
Ciclev10028704m.g Citrus clementina HOM05D006395 ORTHO05D007894 2.5e-06 57.0 83 36.1
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 2.5e-06 57.0 66 42.4
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 3.3e-06 56.6 67 41.8
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 3.3e-06 56.6 94 30.9
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 3.3e-06 56.6 73 38.4
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 3.3e-06 56.6 72 38.9
Cc03_g12890 Coffea canephora HOM05D006395 ORTHO05D007894 4.3e-06 56.2 100 32.0
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 4.3e-06 56.2 68 38.2
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 4.3e-06 56.2 90 32.2
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 4.3e-06 56.2 65 41.5
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 4.3e-06 56.2 65 41.5
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 5.6e-06 55.8 66 42.4
arahy.Tifrunner.gnm1.ann1.P58CS4 Arachis hypogaea HOM05D006395 ORTHO05D007894 5.6e-06 55.8 81 39.5
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 5.6e-06 55.8 65 41.5
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 5.6e-06 55.8 65 41.5
Eucgr.B02227 Eucalyptus grandis HOM05D006395 ORTHO05D007894 5.6e-06 55.8 83 33.7
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 5.6e-06 55.8 89 37.1
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 5.6e-06 55.8 63 41.3
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 5.6e-06 55.8 63 42.9
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 5.6e-06 55.8 66 43.9
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 5.6e-06 55.8 67 41.8
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 7.3e-06 55.5 66 40.9
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 7.3e-06 55.5 68 42.6
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 7.3e-06 55.5 66 42.4
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 7.3e-06 55.5 65 44.6
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 7.3e-06 55.5 65 44.6
Medtr3g465570 Medicago truncatula HOM05D006395 ORTHO05D007894 7.3e-06 55.5 87 35.6
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 7.3e-06 55.5 83 37.3
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 7.3e-06 55.5 68 36.8
MSTRG.21234 Avicennia marina HOM05D006395 ORTHO05D007894 9.5e-06 55.1 83 32.5
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 9.5e-06 55.1 62 41.9
Manes.18G144200 Manihot esculenta HOM05D006395 ORTHO05D007894 9.5e-06 55.1 83 36.1
TPR.G32918 Trifolium pratense HOM05D006395 ORTHO05D007894 9.5e-06 55.1 87 35.6


User provided reference genes

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