Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 6.8e-61 237.3 131 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 1.1e-18 97.1 100 53.0
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 9.6e-15 84.0 152 35.5
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 1.3e-14 83.6 152 34.9
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 1.3e-14 83.6 152 34.9
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 1.6e-14 83.2 152 34.9
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 1.6e-14 83.2 152 34.9
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 6.3e-14 81.3 79 49.4
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 1.1e-13 80.5 80 52.5
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 1.7e-11 73.2 82 48.8
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 1.9e-10 69.7 79 43.0
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 3.2e-10 68.9 83 45.8
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.2e-10 68.6 79 46.8
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 7.2e-10 67.8 135 32.6
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 9.3e-10 67.4 152 32.9
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 9.3e-10 67.4 61 55.7
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 1.6e-09 66.6 61 52.5
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 1.0e-08 63.9 148 32.4
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 2.3e-08 62.8 57 52.6
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 3.9e-08 62.0 103 36.9
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 3.9e-08 62.0 103 36.9
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 3.9e-08 62.0 58 56.9
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 5.1e-08 61.6 103 36.9
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 5.1e-08 61.6 103 36.9
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 5.1e-08 61.6 61 49.2
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 6.7e-08 61.2 151 29.8
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 6.7e-08 61.2 58 50.0
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 8.7e-08 60.8 61 49.2
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 8.7e-08 60.8 61 49.2
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.9e-07 59.7 61 44.3
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.9e-07 59.7 64 46.9
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 1.9e-07 59.7 58 48.3
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.9e-07 59.7 61 47.5
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 2.5e-07 59.3 58 48.3
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.5e-07 59.3 116 37.1
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 2.5e-07 59.3 58 48.3
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 2.5e-07 59.3 161 29.8
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 3.3e-07 58.9 58 46.6
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 3.3e-07 58.9 58 50.0
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 3.3e-07 58.9 56 53.6
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 4.3e-07 58.5 151 37.7
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 4.3e-07 58.5 58 48.3
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.3e-07 58.5 61 49.2
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.3e-07 58.5 61 47.5
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 4.3e-07 58.5 64 45.3
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 4.3e-07 58.5 61 45.9
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 5.7e-07 58.2 58 50.0
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 5.7e-07 58.2 60 48.3
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 7.4e-07 57.8 61 47.5
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 7.4e-07 57.8 58 48.3
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 7.4e-07 57.8 58 48.3
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 9.7e-07 57.4 58 51.7
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 9.7e-07 57.4 60 48.3
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 9.7e-07 57.4 64 45.3
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 9.7e-07 57.4 64 45.3
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 9.7e-07 57.4 58 48.3
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 9.7e-07 57.4 58 50.0
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 9.7e-07 57.4 58 50.0
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 9.7e-07 57.4 58 48.3
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 1.3e-06 57.0 58 48.3
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.3e-06 57.0 64 45.3
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 1.3e-06 57.0 62 48.4
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.3e-06 57.0 64 43.8
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 1.3e-06 57.0 64 43.8
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 1.3e-06 57.0 61 45.9
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 1.3e-06 57.0 61 45.9
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 1.3e-06 57.0 58 50.0
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 1.3e-06 57.0 64 45.3
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 1.6e-06 56.6 60 46.7
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 1.6e-06 56.6 108 36.1
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 1.6e-06 56.6 108 36.1
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 1.6e-06 56.6 64 43.8
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.6e-06 56.6 64 43.8
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.6e-06 56.6 64 43.8
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-06 56.6 64 43.8
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.6e-06 56.6 58 46.6
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 1.6e-06 56.6 58 46.6
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.6e-06 56.6 58 44.8
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 2.2e-06 56.2 58 46.6
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 2.2e-06 56.2 58 46.6
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.2e-06 56.2 64 43.8
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 2.2e-06 56.2 58 48.3
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 2.2e-06 56.2 64 45.3
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 2.2e-06 56.2 64 43.8
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 2.2e-06 56.2 61 47.5
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 2.2e-06 56.2 58 48.3
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 2.8e-06 55.8 57 49.1
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 2.8e-06 55.8 60 46.7
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 2.8e-06 55.8 62 48.4
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 2.8e-06 55.8 58 46.6
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 2.8e-06 55.8 60 46.7
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 2.8e-06 55.8 58 46.6
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 2.8e-06 55.8 58 50.0
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 3.7e-06 55.5 60 46.7
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 3.7e-06 55.5 59 49.2
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 3.7e-06 55.5 61 45.9
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 3.7e-06 55.5 59 49.2
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 4.8e-06 55.1 60 46.7
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 4.8e-06 55.1 58 46.6
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 4.8e-06 55.1 64 43.8
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 4.8e-06 55.1 61 47.5
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 6.3e-06 54.7 58 48.3
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 6.3e-06 54.7 58 48.3
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 6.3e-06 54.7 58 48.3
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 6.3e-06 54.7 64 43.8
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 8.2e-06 54.3 58 48.3
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 8.2e-06 54.3 54 53.7
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 8.2e-06 54.3 58 46.6


User provided reference genes

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