Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 3.1e-182 641.7 336 100.0
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 2.2e-79 300.1 332 50.9
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 2.1e-77 293.5 335 46.6
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 7.8e-77 291.6 335 47.2
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 3.0e-76 289.7 332 48.2
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.1e-75 287.7 335 47.5
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 1.5e-75 287.3 339 47.2
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 4.3e-75 285.8 335 46.9
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 5.6e-75 285.4 335 47.5
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 1.6e-74 283.9 335 47.5
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 2.8e-74 283.1 333 46.8
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 3.6e-74 282.7 335 46.6
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 8.1e-74 281.6 335 47.5
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 8.1e-74 281.6 335 47.8
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.1e-73 281.2 335 46.3
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.4e-73 280.8 335 46.9
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 1.8e-73 280.4 335 46.9
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 1.8e-73 280.4 335 46.9
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.8e-73 280.4 335 46.9
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 5.2e-73 278.9 335 46.9
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 5.2e-73 278.9 329 47.4
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 6.8e-73 278.5 335 46.9
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 8.9e-73 278.1 336 47.0
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 8.9e-73 278.1 335 46.9
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 8.9e-73 278.1 335 46.6
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.2e-72 277.7 335 45.7
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 1.2e-72 277.7 335 46.6
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 1.2e-72 277.7 335 46.0
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 1.2e-72 277.7 335 46.0
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.2e-72 277.7 335 46.0
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.2e-72 277.7 335 46.3
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.5e-72 277.3 335 46.6
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.0e-72 276.9 335 45.7
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.0e-72 276.9 335 45.7
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 2.0e-72 276.9 335 45.4
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 2.0e-72 276.9 335 46.0
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 2.6e-72 276.6 335 45.4
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 2.6e-72 276.6 335 45.7
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 2.6e-72 276.6 335 46.9
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 2.6e-72 276.6 335 46.6
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 2.6e-72 276.6 335 46.6
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 4.4e-72 275.8 335 46.3
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 4.4e-72 275.8 335 46.6
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 4.4e-72 275.8 335 46.6
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 4.4e-72 275.8 335 46.6
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 4.4e-72 275.8 335 46.6
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 5.8e-72 275.4 335 45.1
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 5.8e-72 275.4 335 46.3
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 5.8e-72 275.4 335 46.0
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 7.6e-72 275.0 335 45.4
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 9.9e-72 274.6 337 46.3
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 1.3e-71 274.2 335 45.7
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 1.3e-71 274.2 335 45.7
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 1.3e-71 274.2 335 46.3
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.3e-71 274.2 335 46.0
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 1.7e-71 273.9 332 45.2
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 1.7e-71 273.9 335 46.0
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.7e-71 273.9 335 45.1
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 1.7e-71 273.9 336 46.7
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 1.7e-71 273.9 335 46.6
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.7e-71 273.9 335 46.6
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 2.9e-71 273.1 335 46.0
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.9e-71 273.1 335 46.0
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 2.9e-71 273.1 335 46.0
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 3.8e-71 272.7 335 45.4
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 3.8e-71 272.7 335 45.4
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 4.9e-71 272.3 313 47.3
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 4.9e-71 272.3 336 46.1
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 6.4e-71 271.9 336 46.4
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.4e-71 271.9 335 46.0
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.4e-71 271.9 335 46.0
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 6.4e-71 271.9 335 45.4
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 8.4e-71 271.6 335 45.7
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 8.4e-71 271.6 336 45.8
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 8.4e-71 271.6 335 46.0
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 1.1e-70 271.2 330 46.7
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.4e-70 270.8 335 45.7
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 1.9e-70 270.4 335 46.9
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.9e-70 270.4 335 45.4
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 1.9e-70 270.4 336 46.1
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 2.4e-70 270.0 335 46.0
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 2.4e-70 270.0 335 45.7
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 3.2e-70 269.6 333 44.4
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 3.2e-70 269.6 335 44.8
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 4.2e-70 269.2 335 44.8
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 4.2e-70 269.2 335 44.8
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 4.2e-70 269.2 335 44.8
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 4.2e-70 269.2 335 44.8
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 4.2e-70 269.2 335 44.8
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 4.2e-70 269.2 332 45.5
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 5.4e-70 268.9 335 45.4
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 7.1e-70 268.5 338 45.0
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 7.1e-70 268.5 338 45.0
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 9.2e-70 268.1 313 47.6
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 9.2e-70 268.1 335 43.9
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.6e-69 267.3 335 43.6
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.0e-68 264.6 347 46.1
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.0e-68 264.6 335 43.3
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.3e-67 259.6 316 46.5
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 3.3e-67 259.6 335 45.4
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.3e-66 257.7 335 45.7
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.1e-66 256.9 351 42.2
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 3.1e-65 253.1 332 45.2
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.3e-65 252.3 322 43.8
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 5.8e-64 248.8 297 46.8
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 2.4e-62 243.4 265 49.1
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 3.9e-60 236.1 335 41.5
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 8.7e-60 235.0 433 36.0
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 4.3e-59 232.6 307 44.3
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.6e-58 230.7 251 48.6
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 4.8e-58 229.2 251 49.0
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 6.9e-57 225.3 335 40.6
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 6.9e-57 225.3 332 40.4
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 3.5e-53 213.0 243 47.3
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 1.9e-51 207.2 239 47.7
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 5.6e-51 205.7 411 34.8
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 4.8e-50 202.6 230 47.0
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.1e-49 201.4 364 36.3
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 6.9e-49 198.7 330 35.2
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 2.6e-48 196.8 228 47.4
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.8e-47 193.0 335 38.2
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 1.4e-46 191.0 228 45.2
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 5.3e-41 172.6 198 48.5
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 1.1e-33 148.3 154 50.0
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 1.5e-32 144.4 185 45.4
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 5.0e-31 139.4 177 45.8
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.0e-28 130.2 132 50.0
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.0e-20 103.6 150 41.3
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 3.1e-17 93.6 120 43.3
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.3e-15 88.2 68 60.3
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 7.2e-14 82.4 108 44.4
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 5.2e-12 76.3 125 36.8
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.4e-09 68.2 339 25.4
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.3e-07 61.6 85 43.5
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 3.8e-07 60.1 75 44.0


User provided reference genes

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