Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 3.1e-221 771.5 402 100.0
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 7.1e-117 424.9 307 71.7
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 4.7e-20 103.2 313 32.3
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 1.2e-18 98.6 269 32.0
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 2.9e-17 94.0 326 31.3
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.9e-17 94.0 302 32.5
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 4.9e-17 93.2 298 30.9
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 4.9e-17 93.2 322 32.6
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 8.3e-17 92.4 333 30.3
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.1e-16 92.0 315 31.7
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 1.1e-16 92.0 298 32.2
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.9e-16 91.3 321 29.9
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.4e-16 90.9 324 31.5
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 2.4e-16 90.9 321 31.8
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 4.1e-16 90.1 296 31.4
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 4.1e-16 90.1 327 30.3
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 5.4e-16 89.7 312 31.4
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 5.4e-16 89.7 315 30.8
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.4e-16 89.7 302 31.8
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 9.2e-16 89.0 315 31.7
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 9.2e-16 89.0 298 31.5
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 9.2e-16 89.0 316 32.3
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 9.2e-16 89.0 276 33.0
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.6e-15 88.2 279 31.9
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-15 88.2 312 31.4
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.6e-15 88.2 312 31.4
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.6e-15 88.2 312 31.4
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.6e-15 88.2 312 31.4
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.6e-15 88.2 312 31.1
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 2.0e-15 87.8 327 30.3
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-15 87.8 315 30.8
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-15 87.8 312 31.1
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 2.0e-15 87.8 312 31.1
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 2.0e-15 87.8 312 31.1
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 2.0e-15 87.8 273 34.1
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 2.0e-15 87.8 312 31.1
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 2.7e-15 87.4 312 31.1
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 2.7e-15 87.4 312 31.7
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 2.7e-15 87.4 312 31.1
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 2.7e-15 87.4 312 31.7
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 2.7e-15 87.4 273 33.7
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 3.5e-15 87.0 273 33.0
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.5e-15 87.0 312 31.4
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 3.5e-15 87.0 319 31.0
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 4.6e-15 86.7 298 31.9
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 6.0e-15 86.3 324 29.3
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 6.0e-15 86.3 314 31.2
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 6.0e-15 86.3 318 30.8
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 6.0e-15 86.3 320 31.2
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 6.0e-15 86.3 314 30.3
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 6.0e-15 86.3 273 33.0
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 7.8e-15 85.9 307 31.9
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 7.8e-15 85.9 317 30.0
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 7.8e-15 85.9 325 31.7
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 7.8e-15 85.9 291 32.0
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.0e-14 85.5 313 31.0
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.0e-14 85.5 291 31.3
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.0e-14 85.5 275 33.5
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-14 85.1 315 30.8
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.3e-14 85.1 273 32.6
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.3e-14 85.1 318 30.8
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 1.3e-14 85.1 314 29.9
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.3e-14 85.1 314 29.9
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.7e-14 84.7 314 31.2
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.7e-14 84.7 317 30.0
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.7e-14 84.7 303 32.3
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.3e-14 84.3 332 31.0
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.3e-14 84.3 318 30.2
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 2.3e-14 84.3 317 30.6
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 2.3e-14 84.3 273 33.0
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 3.0e-14 84.0 272 32.7
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 3.0e-14 84.0 272 32.7
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 3.0e-14 84.0 312 31.1
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 3.0e-14 84.0 282 31.9
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 3.0e-14 84.0 272 30.5
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 3.0e-14 84.0 321 29.9
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 3.0e-14 84.0 315 27.9
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 3.9e-14 83.6 307 29.0
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 3.9e-14 83.6 320 30.3
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 5.0e-14 83.2 317 31.5
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 5.0e-14 83.2 272 32.4
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 6.6e-14 82.8 327 30.3
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 8.6e-14 82.4 272 32.7
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 8.6e-14 82.4 321 30.8
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 8.6e-14 82.4 316 30.4
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 8.6e-14 82.4 317 28.7
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 8.6e-14 82.4 273 31.1
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.1e-13 82.0 317 31.2
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 1.1e-13 82.0 266 33.5
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.5e-13 81.6 317 30.9
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.5e-13 81.6 316 30.1
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 1.9e-13 81.3 321 30.5
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.9e-13 81.3 317 29.7
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.9e-13 81.3 274 32.5
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.5e-13 80.9 347 29.4
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.5e-13 80.9 317 31.5
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 3.3e-13 80.5 314 28.3
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 3.3e-13 80.5 316 29.1
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.3e-13 80.5 316 29.1
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 4.3e-13 80.1 317 29.7
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 5.6e-13 79.7 329 30.1
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 5.6e-13 79.7 323 29.7
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 7.3e-13 79.3 316 29.7
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 7.3e-13 79.3 316 29.4
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 7.3e-13 79.3 316 29.7
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 7.3e-13 79.3 316 29.7
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.5e-13 79.0 346 27.7
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 9.5e-13 79.0 272 32.4
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 9.5e-13 79.0 318 29.9
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 1.2e-12 78.6 317 30.3
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.2e-12 78.6 320 28.1
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 1.2e-12 78.6 316 29.1
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.6e-12 78.2 316 29.4
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.6e-12 78.2 318 30.2
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 2.1e-12 77.8 272 31.2
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 2.1e-12 77.8 274 32.1
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 3.6e-12 77.0 322 29.5
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.7e-12 76.6 229 30.6
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 8.1e-12 75.9 268 31.7
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.4e-11 75.1 322 28.6
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 1.8e-11 74.7 329 28.6
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.3e-11 74.3 327 28.7
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 2.3e-11 74.3 268 29.9
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 3.1e-11 73.9 180 34.4
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 5.2e-11 73.2 135 39.3
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 5.2e-11 73.2 181 33.7
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.2e-10 72.0 160 36.2
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.2e-10 72.0 135 37.8
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.5e-10 71.6 211 33.6
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 2.0e-10 71.2 186 33.3
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 4.4e-10 70.1 240 31.2
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.7e-09 68.2 318 28.0
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 8.3e-09 65.9 225 31.6
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.4e-08 65.1 213 31.0
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.6e-07 61.6 124 37.1


User provided reference genes

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