Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G366 Micromonas commoda HOM05D006418 ORTHO05D008063 3.9e-204 714.5 354 100.0
PRCOL_00000121 Prasinoderma coloniale HOM05D006418 ORTHO05D008063 3.8e-82 309.3 304 54.6
Cre12.g542202 Chlamydomonas reinhardtii HOM05D006418 ORTHO05D008063 5.0e-82 308.9 287 54.7
Dinv32422 Davidia involucrata HOM05D006418 ORTHO05D008063 1.6e-72 277.3 296 49.3
BcaB02g07390 Brassica carinata HOM05D006418 ORTHO05D008063 2.1e-72 276.9 313 47.6
Mapoly0138s0005 Marchantia polymorpha HOM05D006418 ORTHO05D008063 6.1e-72 275.4 313 48.6
arahy.Tifrunner.gnm1.ann1.K1NG1D Arachis hypogaea HOM05D006418 ORTHO05D008063 8.0e-72 275.0 297 50.8
Actinidia38288 Actinidia chinensis HOM05D006418 ORTHO05D008063 1.4e-71 274.2 324 48.1
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 3.0e-71 273.1 296 49.7
CAN.G170.50 Capsicum annuum HOM05D006418 ORTHO05D008063 3.0e-71 273.1 298 50.0
Thhalv10006098m.g Eutrema salsugineum HOM05D006418 ORTHO05D008063 4.0e-71 272.7 308 47.7
Medtr8g032700 Medicago truncatula HOM05D006418 ORTHO05D008063 4.0e-71 272.7 297 49.2
Aa31LG10G15180 Aethionema arabicum HOM05D006418 ORTHO05D008063 5.2e-71 272.3 314 47.5
GSVIVG01027527001 Vitis vinifera HOM05D006418 ORTHO05D008063 6.7e-71 271.9 296 50.0
HanXRQChr06g0169031 Helianthus annuus HOM05D006418 ORTHO05D008063 8.8e-71 271.6 292 49.3
Glyma.03G017600 Glycine max HOM05D006418 ORTHO05D008063 1.2e-70 271.2 319 48.6
THA.LOC104827683 Tarenaya hassleriana HOM05D006418 ORTHO05D008063 1.2e-70 271.2 312 48.7
BcaC08g45098 Brassica carinata HOM05D006418 ORTHO05D008063 1.5e-70 270.8 321 46.1
Cc02_g37230 Coffea canephora HOM05D006418 ORTHO05D008063 1.5e-70 270.8 296 49.7
TPR.G17586 Trifolium pratense HOM05D006418 ORTHO05D008063 1.5e-70 270.8 297 49.2
AT3G61080 Arabidopsis thaliana HOM05D006418 ORTHO05D008063 2.0e-70 270.4 320 48.1
A07p25300 Brassica napus HOM05D006418 ORTHO05D008063 2.6e-70 270.0 302 48.3
CARHR171390 Cardamine hirsuta HOM05D006418 ORTHO05D008063 2.6e-70 270.0 312 48.1
Lj7A519G38 Lonicera japonica HOM05D006418 ORTHO05D008063 2.6e-70 270.0 310 50.0
Ciclev10021113m.g Citrus clementina HOM05D006418 ORTHO05D008063 3.3e-70 269.6 316 47.5
Eucgr.E00217 Eucalyptus grandis HOM05D006418 ORTHO05D008063 4.4e-70 269.2 297 49.8
Pp3c15_5030 Physcomitrium patens HOM05D006418 ORTHO05D008063 4.4e-70 269.2 305 47.9
TWI59G1449 Tripterygium wilfordii HOM05D006418 ORTHO05D008063 4.4e-70 269.2 310 48.4
Carub.0005s2773 Capsella rubella HOM05D006418 ORTHO05D008063 5.7e-70 268.9 296 49.0
CANSAT56G2190 Cannabis sativa HOM05D006418 ORTHO05D008063 7.5e-70 268.5 300 48.7
DCAR_025170 Daucus carota HOM05D006418 ORTHO05D008063 7.5e-70 268.5 300 49.3
Sp5g02280 Schrenkiella parvula HOM05D006418 ORTHO05D008063 7.5e-70 268.5 296 48.6
PGSC0003DMG400017054 Solanum tuberosum HOM05D006418 ORTHO05D008063 9.7e-70 268.1 297 48.8
ECA236G1148 Erigeron canadensis HOM05D006418 ORTHO05D008063 1.3e-69 267.7 305 47.5
AL5G43290 Arabidopsis lyrata HOM05D006418 ORTHO05D008063 1.7e-69 267.3 311 47.3
Aqoxy5G03975 Aquilegia oxysepala HOM05D006418 ORTHO05D008063 2.2e-69 266.9 312 46.5
Rhsim07G0021100 Rhododendron simsii HOM05D006418 ORTHO05D008063 2.8e-69 266.5 325 46.5
Peaxi162Scf00021g00525 Petunia axillaris HOM05D006418 ORTHO05D008063 3.7e-69 266.2 297 48.5
BraA07t30173Z Brassica rapa HOM05D006418 ORTHO05D008063 4.8e-69 265.8 302 47.4
MD07G1128500 Malus domestica HOM05D006418 ORTHO05D008063 4.8e-69 265.8 296 48.3
Sopen01g037560 Solanum pennellii HOM05D006418 ORTHO05D008063 4.8e-69 265.8 297 48.5
vmacro13338 Vaccinium macrocarpon HOM05D006418 ORTHO05D008063 4.8e-69 265.8 296 48.0
EL10Ac1g00963 Beta vulgaris HOM05D006418 ORTHO05D008063 6.3e-69 265.4 294 49.0
C06p27060 Brassica napus HOM05D006418 ORTHO05D008063 6.3e-69 265.4 328 45.4
BolC6t37878H Brassica oleracea HOM05D006418 ORTHO05D008063 6.3e-69 265.4 328 45.4
Lj3g0006580 Lotus japonicus HOM05D006418 ORTHO05D008063 6.3e-69 265.4 319 47.3
VMungo0331G0376 Vigna mungo HOM05D006418 ORTHO05D008063 6.3e-69 265.4 296 49.7
AagrBONN_evm.TU.Sc2ySwM_344.2134 Anthoceros agrestis HOM05D006418 ORTHO05D008063 8.2e-69 265.0 315 46.3
Hund27325 Selenicereus undatus HOM05D006418 ORTHO05D008063 8.2e-69 265.0 301 48.8
Nitab4.5_0010430g0060 Nicotiana tabacum HOM05D006418 ORTHO05D008063 1.1e-68 264.6 297 47.8
Os03g0117800 Oryza sativa ssp. japonica HOM05D006418 ORTHO05D008063 1.1e-68 264.6 357 44.3
ClCG05G001910 Citrullus lanatus HOM05D006418 ORTHO05D008063 1.8e-68 263.8 317 46.4
Nn1g01350 Nelumbo nucifera HOM05D006418 ORTHO05D008063 2.4e-68 263.5 297 47.8
SMO356G0133 Selaginella moellendorffii HOM05D006418 ORTHO05D008063 2.4e-68 263.5 304 46.1
Solyc01g091780.4 Solanum lycopersicum HOM05D006418 ORTHO05D008063 2.4e-68 263.5 297 48.1
FvH4_7g13130 Fragaria vesca HOM05D006418 ORTHO05D008063 3.1e-68 263.1 315 46.0
FAN06G0540 Fragaria x ananassa HOM05D006418 ORTHO05D008063 3.1e-68 263.1 315 46.0
FAN06G3976 Fragaria x ananassa HOM05D006418 ORTHO05D008063 3.1e-68 263.1 315 46.0
Zm00001eb001200 Zea mays HOM05D006418 ORTHO05D008063 3.1e-68 263.1 297 47.8
Ca_23755_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 4.1e-68 262.7 298 48.3
COL.COLO4_12625 Corchorus olitorius HOM05D006418 ORTHO05D008063 7.0e-68 261.9 309 48.5
Hma1.2p1_0033F.1_g020630 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 7.0e-68 261.9 296 47.6
TAR375G0873 Trochodendron aralioides HOM05D006418 ORTHO05D008063 7.0e-68 261.9 300 47.7
FAN10G2923 Fragaria x ananassa HOM05D006418 ORTHO05D008063 9.1e-68 261.5 315 46.7
Phvul.010G092700 Phaseolus vulgaris HOM05D006418 ORTHO05D008063 9.1e-68 261.5 297 48.5
FAN03G2411 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.2e-67 261.2 315 46.0
FAN01G2003 Fragaria x ananassa HOM05D006418 ORTHO05D008063 2.0e-67 260.4 315 45.4
Lalb_Chr10g0097531 Lupinus albus HOM05D006418 ORTHO05D008063 2.0e-67 260.4 319 46.1
Cfa004182 Carpinus fangiana HOM05D006418 ORTHO05D008063 3.5e-67 259.6 296 48.6
Potri.002G153100 Populus trichocarpa HOM05D006418 ORTHO05D008063 4.5e-67 259.2 306 46.1
PSO063G7157 Papaver somniferum HOM05D006418 ORTHO05D008063 7.7e-67 258.5 341 44.6
Sabra02G0121400 Salix brachista HOM05D006418 ORTHO05D008063 7.7e-67 258.5 306 45.8
HPP92_014577 Vanilla planifolia HOM05D006418 ORTHO05D008063 7.7e-67 258.5 311 48.2
PGR042G1311 Punica granatum HOM05D006418 ORTHO05D008063 1.0e-66 258.1 307 46.6
ATR0757G200 Amborella trichopoda HOM05D006418 ORTHO05D008063 1.3e-66 257.7 318 45.9
Duzib138G1515 Durio zibethinus HOM05D006418 ORTHO05D008063 1.7e-66 257.3 320 46.2
Gorai.007G095100 Gossypium raimondii HOM05D006418 ORTHO05D008063 1.7e-66 257.3 300 47.0
RcHm_v2.0_Chr1g0352261 Rosa chinensis HOM05D006418 ORTHO05D008063 3.8e-66 256.1 296 46.6
Migut.B01688 Erythranthe guttata HOM05D006418 ORTHO05D008063 5.0e-66 255.8 298 48.0
CiPaw.01G053600 Carya illinoinensis HOM05D006418 ORTHO05D008063 6.5e-66 255.4 317 45.7
Gohir.D11G089100 Gossypium hirsutum HOM05D006418 ORTHO05D008063 1.5e-65 254.2 300 46.7
CBR_g38943 Chara braunii HOM05D006418 ORTHO05D008063 2.5e-65 253.4 303 47.9
SalBow3G2367 Salvia bowleyana HOM05D006418 ORTHO05D008063 4.7e-64 249.2 328 45.1
Nitab4.5_0004550g0130 Nicotiana tabacum HOM05D006418 ORTHO05D008063 6.1e-64 248.8 308 45.8
CsaV3_3G009310 Cucumis sativus L. HOM05D006418 ORTHO05D008063 1.2e-62 244.6 247 51.0
Lsat_1_v5_gn_7_8501 Lactuca sativa HOM05D006418 ORTHO05D008063 1.3e-61 241.1 264 48.1
Prupe.2G154600 Prunus persica HOM05D006418 ORTHO05D008063 1.3e-61 241.1 246 50.0
Sed0024588 Sechium edule HOM05D006418 ORTHO05D008063 1.3e-61 241.1 250 50.0
CiPaw.01G023800 Carya illinoinensis HOM05D006418 ORTHO05D008063 2.8e-61 240.0 328 43.6
MELO3C006151.2 Cucumis melo HOM05D006418 ORTHO05D008063 2.7e-59 233.4 362 41.7
SGA_v2.0_scaffold95G28870 Striga asiatica HOM05D006418 ORTHO05D008063 3.0e-55 219.9 310 43.2
Manes.01G262400 Manihot esculenta HOM05D006418 ORTHO05D008063 3.4e-54 216.5 264 46.2
Psat4g151800 Pisum sativum HOM05D006418 ORTHO05D008063 4.9e-53 212.6 253 46.6
Oeu024416.1 Olea europaea HOM05D006418 ORTHO05D008063 1.8e-52 210.7 261 42.9
Thecc.01G368600 Theobroma cacao HOM05D006418 ORTHO05D008063 7.0e-52 208.8 271 45.0
AUR62004291 Chenopodium quinoa HOM05D006418 ORTHO05D008063 9.2e-52 208.4 257 45.9
unitig_22.g5367 Utricularia gibba HOM05D006418 ORTHO05D008063 1.6e-51 207.6 209 51.7
Cc02_g37660 Coffea canephora HOM05D006418 ORTHO05D008063 2.7e-51 206.8 193 54.9
CDE01G0065 Ceratophyllum demersum HOM05D006418 ORTHO05D008063 3.5e-51 206.5 269 43.5
Atru.chr5.403 Acer truncatum HOM05D006418 ORTHO05D008063 3.3e-49 199.9 243 45.3
Gohir.A11G085000 Gossypium hirsutum HOM05D006418 ORTHO05D008063 2.8e-48 196.8 176 54.5
QL08p050652 Quercus lobata HOM05D006418 ORTHO05D008063 1.5e-38 164.5 258 39.9
Cpa.g.sc18.197 Carica papaya HOM05D006418 ORTHO05D008063 7.8e-35 152.1 232 41.4
Pp3c1_6480 Physcomitrium patens HOM05D006418 ORTHO05D008063 1.0e-34 151.8 263 38.8
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 1.1e-33 148.3 311 33.8
SEGI_14549 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 4.0e-31 139.8 178 43.8
MBI12_g25033_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 2.6e-30 137.1 257 34.6
Hma1.2p1_0033F.1_g020640 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 3.2e-28 130.2 240 35.8
Sc26g0001060 Simmondsia chinensis HOM05D001335 ORTHO05D001184 4.4e-22 109.8 131 45.0
FAN10G0301 Fragaria x ananassa HOM05D006418 ORTHO05D008063 6.6e-18 95.9 188 35.1
arahy.Tifrunner.gnm1.ann1.N7AMXP Arachis hypogaea HOM05D006418 ORTHO05D008063 8.7e-18 95.5 144 43.1
Haze_15226 Corylus avellana HOM05D006418 ORTHO05D008063 1.5e-14 84.7 152 38.2
Glyma.07G078900 Glycine max HOM05D006418 ORTHO05D008063 3.2e-12 77.0 101 43.6
Sc26g0001070 Simmondsia chinensis HOM05D006418 ORTHO05D008063 6.0e-11 72.8 90 44.4
ATR0620G127 Amborella trichopoda HOM05D006418 ORTHO05D008063 5.6e-09 66.2 73 43.8
Gohir.A11G084900 Gossypium hirsutum HOM05D006418 ORTHO05D008063 9.0e-07 58.9 95 36.8


User provided reference genes

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