Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G357 Micromonas commoda HOM05D001245 ORTHO05D004475 0.0e+00 1716.4 971 100.0
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 9.0e-33 146.7 673 23.3
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 7.6e-32 143.7 712 23.3
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 1.7e-31 142.5 719 22.8
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 2.4e-30 138.7 713 23.3
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 2.4e-30 138.7 724 23.5
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 3.2e-30 138.3 721 23.0
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 7.1e-30 137.1 690 23.2
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 2.1e-29 135.6 716 23.6
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 4.6e-29 134.4 656 23.6
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 4.6e-29 134.4 664 23.9
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 4.6e-29 134.4 716 23.0
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.3e-28 132.9 680 22.5
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 3.0e-28 131.7 709 23.7
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 3.0e-28 131.7 714 23.5
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 3.0e-28 131.7 671 23.4
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 3.9e-28 131.3 690 24.2
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 8.7e-28 130.2 675 23.1
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 1.1e-27 129.8 668 23.8
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 4.3e-27 127.9 678 23.7
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 5.6e-27 127.5 696 24.0
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 7.4e-27 127.1 688 22.7
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 7.4e-27 127.1 710 23.0
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.3e-26 126.3 671 23.4
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 1.6e-26 125.9 680 22.1
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 1.6e-26 125.9 712 23.5
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 2.8e-26 125.2 676 22.5
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 4.8e-26 124.4 681 22.6
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 6.2e-26 124.0 703 23.2
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 6.2e-26 124.0 678 23.0
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 6.2e-26 124.0 648 24.1
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 6.2e-26 124.0 711 22.9
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 4.0e-25 121.3 692 22.5
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 5.3e-25 120.9 676 22.3
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 1.2e-24 119.8 715 22.5
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 2.0e-24 119.0 678 22.1
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 3.4e-24 118.2 715 23.6
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 4.5e-24 117.9 658 23.1
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 7.6e-24 117.1 715 22.7
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 2.2e-23 115.5 721 22.1
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 2.9e-23 115.2 683 21.7
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 2.9e-23 115.2 658 23.3
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 4.9e-23 114.4 775 21.8
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 6.5e-23 114.0 718 22.4
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 1.1e-22 113.2 699 22.6
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 1.1e-22 113.2 719 24.1
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 1.4e-22 112.8 669 22.4
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 1.4e-22 112.8 678 23.5
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 5.5e-22 110.9 763 21.8
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 5.5e-22 110.9 734 21.0
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 2.1e-21 109.0 719 20.9
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 2.1e-21 109.0 679 23.1
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 2.7e-21 108.6 671 21.9
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 7.9e-21 107.1 712 21.8
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 1.3e-20 106.3 175 34.9
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 2.3e-20 105.5 719 20.9
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 3.9e-20 104.8 661 22.2
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 3.9e-20 104.8 670 22.1
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 5.1e-20 104.4 684 22.1
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 6.7e-20 104.0 676 21.4
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 8.7e-20 103.6 286 29.0
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 8.7e-20 103.6 652 22.9
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 8.7e-20 103.6 203 32.0
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 3.3e-19 101.7 654 21.7
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 4.3e-19 101.3 692 21.5
CDE02G2376 Ceratophyllum demersum HOM05D001245 ORTHO05D004475 2.1e-18 99.0 140 35.0
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 2.8e-18 98.6 124 40.3
Sopen01g030190 Solanum pennellii HOM05D001245 ORTHO05D004475 4.8e-18 97.8 143 34.3
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 8.2e-18 97.1 128 39.1
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 1.4e-17 96.3 755 20.9
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.8e-17 95.9 143 31.5
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 1.8e-17 95.9 143 34.3
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 2.4e-17 95.5 198 32.3
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 2.4e-17 95.5 124 37.9
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 2.4e-17 95.5 195 30.8
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 3.1e-17 95.1 143 31.5
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 4.1e-17 94.7 143 30.8
RcHm_v2.0_Chr6g0296681 Rosa chinensis HOM05D001245 ORTHO05D004475 4.1e-17 94.7 143 31.5
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 6.9e-17 94.0 670 22.2
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 6.9e-17 94.0 210 27.1
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 9.0e-17 93.6 126 34.9
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 1.2e-16 93.2 125 37.6
CAN.G410.39 Capsicum annuum HOM05D001245 ORTHO05D004475 1.2e-16 93.2 143 33.6
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 1.2e-16 93.2 688 22.5
ATR0561G228 Amborella trichopoda HOM05D001245 ORTHO05D004475 2.0e-16 92.4 124 37.9
Eucgr.F03841 Eucalyptus grandis HOM05D001245 ORTHO05D004475 2.0e-16 92.4 124 35.5
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 2.6e-16 92.0 143 31.5
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 5.8e-16 90.9 143 34.3
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 7.6e-16 90.5 749 21.8
Dinv14684 Davidia involucrata HOM05D001245 ORTHO05D004475 1.0e-15 90.1 128 35.2
SHI09212 Sapria himalayana HOM05D000105 ORTHO05D000023 1.0e-15 90.1 137 32.8
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 1.7e-15 89.4 159 34.0
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 5.0e-15 87.8 125 32.8
CsaV3_UNG113870 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.0e-15 87.8 115 36.5
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 5.0e-15 87.8 136 33.8
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 8.4e-15 87.0 151 35.1
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 1.1e-14 86.7 131 33.6
Sc26g0002960 Simmondsia chinensis HOM05D001245 ORTHO05D004475 1.1e-14 86.7 125 36.0
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 7.1e-14 84.0 124 34.7
SEGI_12378 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 7.1e-14 84.0 102 36.3
MD08G1159000 Malus domestica HOM05D001245 ORTHO05D004475 9.3e-14 83.6 125 33.6
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 1.6e-13 82.8 122 37.7
CiPaw.16G022900 Carya illinoinensis HOM05D001245 ORTHO05D004475 2.1e-13 82.4 124 33.9
VMungo0647G1057 Vigna mungo HOM05D001245 ORTHO05D004475 2.1e-13 82.4 124 33.1
CsaV3_4G028030 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.3e-12 79.7 95 36.8
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 3.0e-12 78.6 141 29.8
CsaV3_4G038030 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-12 78.2 95 35.8
CsaV3_UNG082660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-12 78.2 82 40.2
CsaV3_UNG123970 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-12 78.2 82 40.2
CsaV3_UNG142080 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-12 78.2 95 35.8
CsaV3_UNG169310 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-12 78.2 82 40.2
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 5.1e-12 77.8 131 33.6
CsaV3_UNG070580 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-11 76.6 82 39.0
CsaV3_UNG098730 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-11 76.6 82 40.2
CsaV3_UNG178370 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-11 76.6 82 39.0
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.5e-11 76.3 82 39.0
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.9e-11 75.9 85 41.2
HPP92_027721 Vanilla planifolia HOM05D001245 ORTHO05D004475 7.4e-11 73.9 95 37.9
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 6.3e-10 70.9 130 32.3
BraA03t12302Z Brassica rapa HOM05D004995 ORTHO05D006034 6.9e-09 67.4 148 31.1
A03p31220 Brassica napus HOM05D004995 ORTHO05D006034 2.0e-08 65.9 148 31.1
Pp3c19_810 Physcomitrium patens HOM05D001245 ORTHO05D004475 2.6e-08 65.5 150 29.3
PRCOL_00000968 Prasinoderma coloniale HOM05D001245 ORTHO05D004475 2.6e-08 65.5 82 39.0
BcaB04g19399 Brassica carinata HOM05D001245 ORTHO05D004475 3.4e-08 65.1 125 29.6
BcaB01g02426 Brassica carinata HOM05D004995 ORTHO05D006034 4.5e-08 64.7 149 29.5
Aqoxy5G04290 Aquilegia oxysepala HOM05D004995 ORTHO05D006034 7.7e-08 63.9 109 32.1
Thhalv10028365m.g Eutrema salsugineum HOM05D004995 ORTHO05D006034 7.7e-08 63.9 149 30.2
FAN13G2181 Fragaria x ananassa HOM05D004995 ORTHO05D006034 1.0e-07 63.5 208 27.9
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 1.3e-07 63.2 196 27.6
C03p38070 Brassica napus HOM05D004995 ORTHO05D006034 1.7e-07 62.8 148 29.7
Nn3g21651 Nelumbo nucifera HOM05D004995 ORTHO05D006034 2.9e-07 62.0 166 28.3
TPR.G19766 Trifolium pratense HOM05D004995 ORTHO05D006034 2.9e-07 62.0 147 30.6
Aa31LG5G1780 Aethionema arabicum HOM05D004995 ORTHO05D006034 3.8e-07 61.6 210 26.2
Ca_30263_v3 Cicer arietinum L. HOM05D004995 ORTHO05D006034 3.8e-07 61.6 101 34.7
FvH4_5g39450 Fragaria vesca HOM05D004995 ORTHO05D006034 3.8e-07 61.6 208 27.9
FAN18G1671 Fragaria x ananassa HOM05D004995 ORTHO05D006034 3.8e-07 61.6 208 27.9
BolC3t16092H Brassica oleracea HOM05D004995 ORTHO05D006034 5.0e-07 61.2 148 29.1
SMO367G0571 Selaginella moellendorffii HOM05D004995 ORTHO05D006034 5.0e-07 61.2 214 26.6
FAN04G1561 Fragaria x ananassa HOM05D004995 ORTHO05D006034 6.5e-07 60.8 205 28.3
RcHm_v2.0_Chr7g0241761 Rosa chinensis HOM05D004995 ORTHO05D006034 6.5e-07 60.8 230 26.5
Sp6g02000 Schrenkiella parvula HOM05D004995 ORTHO05D006034 6.5e-07 60.8 149 28.9
Solyc06g009680.4 Solanum lycopersicum HOM05D004995 ORTHO05D006034 6.5e-07 60.8 278 26.3
COL.COLO4_23251 Corchorus olitorius HOM05D004995 ORTHO05D006034 8.5e-07 60.5 178 28.1
Sed0026389 Sechium edule HOM05D004995 ORTHO05D006034 8.5e-07 60.5 179 27.4
Atru.chr5.1036 Acer truncatum HOM05D004995 ORTHO05D006034 1.1e-06 60.1 109 32.1
CARHR250290 Cardamine hirsuta HOM05D004995 ORTHO05D006034 1.1e-06 60.1 149 29.5
Prupe.8G270500 Prunus persica HOM05D004995 ORTHO05D006034 1.4e-06 59.7 165 27.9
Hund09619 Selenicereus undatus HOM05D004995 ORTHO05D006034 1.4e-06 59.7 166 27.1
Sopen06g004320 Solanum pennellii HOM05D004995 ORTHO05D006034 1.4e-06 59.7 271 26.2
Ca_10292_v3 Cicer arietinum L. HOM05D004995 ORTHO05D006034 1.9e-06 59.3 109 32.1
CsaV3_7G029870 Cucumis sativus L. HOM05D004995 ORTHO05D006034 1.9e-06 59.3 184 27.2
ECA236G3500 Erigeron canadensis HOM05D004995 ORTHO05D006034 1.9e-06 59.3 163 28.8
Glyma.10G014100 Glycine max HOM05D004995 ORTHO05D006034 1.9e-06 59.3 136 30.9
Medtr1g087290 Medicago truncatula HOM05D004995 ORTHO05D006034 1.9e-06 59.3 147 29.9
Psat6g162360 Pisum sativum HOM05D004995 ORTHO05D006034 1.9e-06 59.3 147 29.9
AL6G51110 Arabidopsis lyrata HOM05D004995 ORTHO05D006034 2.5e-06 58.9 149 29.5
Migut.D00092 Erythranthe guttata HOM05D004995 ORTHO05D006034 2.5e-06 58.9 201 25.4
Carub.0006s3511 Capsella rubella HOM05D004995 ORTHO05D006034 3.2e-06 58.5 142 28.9
Lalb_Chr02g0146751 Lupinus albus HOM05D004995 ORTHO05D006034 3.2e-06 58.5 203 26.6
Haze_05021 Corylus avellana HOM05D004995 ORTHO05D006034 4.2e-06 58.2 109 30.3
Lj5g0006877 Lotus japonicus HOM05D004995 ORTHO05D006034 4.2e-06 58.2 142 29.6
arahy.Tifrunner.gnm1.ann1.KJ11SU Arachis hypogaea HOM05D004995 ORTHO05D006034 5.5e-06 57.8 109 31.2
arahy.Tifrunner.gnm1.ann1.SI6M6S Arachis hypogaea HOM05D004995 ORTHO05D006034 5.5e-06 57.8 109 31.2
Cfa005817 Carpinus fangiana HOM05D004995 ORTHO05D006034 5.5e-06 57.8 109 30.3
Thecc.01G311300 Theobroma cacao HOM05D004995 ORTHO05D006034 5.5e-06 57.8 126 28.6
VMungo0720G1458 Vigna mungo HOM05D004995 ORTHO05D006034 5.5e-06 57.8 125 28.8
BcaC01g06775 Brassica carinata HOM05D004995 ORTHO05D006034 7.2e-06 57.4 148 29.1
CAN.G1280.22 Capsicum annuum HOM05D004995 ORTHO05D006034 7.2e-06 57.4 158 27.8
Oeu047387.1 Olea europaea HOM05D004995 ORTHO05D006034 7.2e-06 57.4 109 31.2
Cre12.g515900 Chlamydomonas reinhardtii HOM05D001245 ORTHO05D004475 9.4e-06 57.0 83 34.9
PGR044G2031 Punica granatum HOM05D004995 ORTHO05D006034 9.4e-06 57.0 109 32.1


User provided reference genes

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