Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 1.5e-187 659.4 344 100.0
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 9.1e-81 304.7 350 48.3
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 7.2e-78 295.0 344 48.5
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 1.0e-76 291.2 346 48.0
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 1.0e-76 291.2 346 48.0
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.0e-76 291.2 341 47.2
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.8e-76 290.4 341 47.8
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 1.8e-76 290.4 341 47.5
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 2.3e-76 290.0 349 47.3
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 5.2e-76 288.9 346 47.7
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 8.8e-76 288.1 336 47.9
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 8.8e-76 288.1 347 46.7
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 8.8e-76 288.1 344 48.0
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 2.0e-75 287.0 346 47.7
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 5.7e-75 285.4 344 47.4
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 7.5e-75 285.0 346 47.4
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.7e-74 283.9 341 47.2
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 2.2e-74 283.5 346 47.1
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 2.8e-74 283.1 346 47.1
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 3.7e-74 282.7 341 46.9
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 3.7e-74 282.7 346 46.8
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 6.3e-74 282.0 346 47.7
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 6.3e-74 282.0 342 47.4
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.8e-73 280.4 344 46.8
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 1.8e-73 280.4 340 45.9
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 2.4e-73 280.0 344 46.2
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 3.1e-73 279.6 346 47.1
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 3.1e-73 279.6 344 46.5
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 4.1e-73 279.3 344 47.1
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 4.1e-73 279.3 342 46.8
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 4.1e-73 279.3 348 46.3
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 4.1e-73 279.3 346 46.0
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 4.1e-73 279.3 341 46.9
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 5.4e-73 278.9 344 46.8
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 7.0e-73 278.5 346 46.5
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 7.0e-73 278.5 342 45.9
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 7.0e-73 278.5 341 44.9
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 9.2e-73 278.1 344 46.5
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 9.2e-73 278.1 342 46.8
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.6e-72 277.3 336 46.7
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 2.7e-72 276.6 346 46.5
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 2.7e-72 276.6 338 45.9
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 2.7e-72 276.6 344 46.2
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 4.5e-72 275.8 341 46.0
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.3e-71 274.2 337 46.9
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 1.7e-71 273.9 362 45.3
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 1.7e-71 273.9 344 44.8
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 3.8e-71 272.7 341 45.5
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 6.6e-71 271.9 338 45.6
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 1.5e-70 270.8 358 44.7
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 1.5e-70 270.8 340 45.9
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.9e-70 270.4 344 46.5
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.9e-70 270.4 340 45.9
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 2.5e-70 270.0 339 45.4
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 3.3e-70 269.6 341 45.7
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 7.3e-70 268.5 341 46.3
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 7.3e-70 268.5 342 46.5
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 6.1e-69 265.4 344 44.8
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.4e-68 264.2 340 45.6
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 3.0e-68 263.1 341 45.2
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 8.9e-68 261.5 340 44.7
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.5e-67 260.8 341 44.0
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 2.0e-67 260.4 338 44.1
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.4e-67 259.6 339 44.2
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 5.7e-67 258.8 340 44.1
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.3e-66 257.7 364 44.0
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.1e-65 254.6 341 44.6
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 4.1e-65 252.7 344 43.0
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 7.0e-65 251.9 343 44.0
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 9.2e-65 251.5 342 43.9
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.2e-64 251.1 341 43.7
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 2.0e-64 250.4 336 43.5
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 3.5e-64 249.6 373 40.2
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 3.5e-64 249.6 348 42.8
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 4.6e-64 249.2 397 41.8
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.0e-63 248.1 339 43.7
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 3.0e-63 246.5 341 43.7
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.9e-62 243.8 341 44.0
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.1e-61 240.4 359 40.1
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.1e-61 240.4 280 47.5
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 8.0e-61 238.4 326 44.5
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 1.4e-60 237.7 324 44.1
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 2.3e-60 236.9 347 43.5
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 3.4e-59 233.0 282 46.1
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 3.4e-59 233.0 337 42.1
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 2.2e-58 230.3 335 41.8
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 2.4e-57 226.9 443 36.1
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 3.2e-57 226.5 276 46.7
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.7e-56 223.4 347 40.3
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.7e-55 220.7 339 39.8
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 1.9e-54 217.2 407 36.1
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 9.5e-54 214.9 309 42.1
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.1e-53 213.8 339 38.3
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.8e-53 213.4 368 37.0
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 6.2e-53 212.2 247 49.4
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 1.4e-52 211.1 341 39.6
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 3.1e-52 209.9 249 48.2
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 3.4e-51 206.5 244 48.4
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 2.9e-50 203.4 244 48.4
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 3.7e-50 203.0 273 44.7
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 6.4e-50 202.2 247 48.2
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 3.2e-49 199.9 241 47.3
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 6.0e-48 195.7 244 45.9
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 1.7e-47 194.1 243 45.7
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 3.9e-47 193.0 387 34.1
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 1.1e-44 184.9 244 43.4
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 4.4e-43 179.5 192 49.0
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 9.9e-43 178.3 213 47.9
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 2.3e-39 167.2 184 48.4
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.1e-33 148.3 327 31.5
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 1.4e-33 147.9 315 34.3
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.5e-32 143.3 201 40.8
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 9.9e-27 125.2 221 38.5
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 3.5e-24 116.7 306 30.4
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.5e-22 110.5 123 47.2
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.9e-18 97.1 150 41.3
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.1e-17 95.1 117 46.2
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.9e-17 94.4 120 40.8
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.6e-13 81.3 156 35.3
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.0e-11 74.3 97 45.4
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.8e-11 72.8 85 45.9
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.8e-10 70.1 151 33.8
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 1.2e-08 65.1 108 33.3
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 7.9e-08 62.4 84 40.5
Cre10.g430450 Chlamydomonas reinhardtii HOM05D003894 ORTHO05D004584 1.1e-06 58.5 100 30.0
Glyma.17G142800 Glycine max HOM05D003894 ORTHO05D004584 1.1e-06 58.5 112 34.8
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.5e-06 58.2 148 30.4
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 1.9e-06 57.8 150 28.7
Glyma.05G060500 Glycine max HOM05D003894 ORTHO05D004584 2.5e-06 57.4 112 33.9
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 2.5e-06 57.4 114 34.2
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 7.4e-06 55.8 103 31.1
PSO170G4158 Papaver somniferum HOM05D003894 ORTHO05D004584 7.4e-06 55.8 154 27.3
SEGI_14746 Sequoiadendron giganteum HOM05D003894 ORTHO05D004584 7.4e-06 55.8 106 30.2
PSO017G7068 Papaver somniferum HOM05D003894 ORTHO05D004584 9.6e-06 55.5 154 27.3
Potri.001G156600 Populus trichocarpa HOM05D003894 ORTHO05D004584 9.6e-06 55.5 106 31.1
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 9.6e-06 55.5 112 32.1


User provided reference genes

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