Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 0.0e+00 2605.5 1371 100.0
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 2.6e-17 95.9 324 27.8
PRCOL_00003158 Prasinoderma coloniale HOM05D027329 ORTHO05D049224 2.6e-17 95.9 213 35.2
MCO10G137 Micromonas commoda HOM05D027329 ORTHO05D269822 7.5e-17 94.4 89 50.6
MCO05G356 Micromonas commoda HOM05D027329 ORTHO05D049224 6.3e-16 91.3 163 38.0
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 8.3e-16 90.9 205 28.3
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 8.3e-16 90.9 193 29.0
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 4.1e-15 88.6 205 27.3
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 4.1e-15 88.6 205 27.3
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 1.2e-14 87.0 205 26.3
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 2.0e-14 86.3 326 26.7
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 2.7e-14 85.9 205 26.3
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 4.5e-14 85.1 205 27.8
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 5.9e-14 84.7 205 25.9
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 7.7e-14 84.3 205 25.9
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 1.0e-13 84.0 205 25.9
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 1.3e-13 83.6 205 27.3
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 2.2e-13 82.8 205 25.4
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 2.9e-13 82.4 205 25.9
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 2.9e-13 82.4 205 25.4
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 2.9e-13 82.4 217 28.1
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 2.9e-13 82.4 205 25.4
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 6.5e-13 81.3 205 26.3
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 8.5e-13 80.9 133 35.3
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 1.1e-12 80.5 205 26.8
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 1.1e-12 80.5 121 34.7
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 1.1e-12 80.5 381 22.8
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 1.5e-12 80.1 205 24.9
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 1.5e-12 80.1 205 25.9
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 1.5e-12 80.1 205 24.9
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 2.5e-12 79.3 205 24.9
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.5e-12 79.3 381 22.8
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 2.5e-12 79.3 366 22.1
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 2.5e-12 79.3 205 24.4
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 3.2e-12 79.0 144 33.3
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 3.2e-12 79.0 129 31.8
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 4.2e-12 78.6 235 27.7
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 4.2e-12 78.6 205 26.8
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 5.5e-12 78.2 205 24.9
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 5.5e-12 78.2 205 24.4
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 7.2e-12 77.8 201 25.9
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 9.4e-12 77.4 208 25.5
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 1.2e-11 77.0 205 25.4
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.2e-11 77.0 327 22.0
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 1.2e-11 77.0 341 24.0
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 1.2e-11 77.0 205 24.9
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 1.2e-11 77.0 227 26.0
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.6e-11 76.6 160 30.0
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 1.6e-11 76.6 206 27.7
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 2.1e-11 76.3 205 24.9
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 2.1e-11 76.3 205 24.4
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 2.1e-11 76.3 133 34.6
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 2.7e-11 75.9 205 23.4
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 3.6e-11 75.5 334 23.4
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 3.6e-11 75.5 333 24.3
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 6.1e-11 74.7 208 25.0
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 6.1e-11 74.7 205 24.4
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 8.0e-11 74.3 205 24.9
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 8.0e-11 74.3 118 34.7
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 8.0e-11 74.3 118 34.7
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 8.0e-11 74.3 205 24.9
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 2.3e-10 72.8 237 25.3
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 2.3e-10 72.8 120 35.8
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 3.0e-10 72.4 205 24.9
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 3.0e-10 72.4 204 28.4
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 3.0e-10 72.4 205 24.4
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 6.8e-10 71.2 118 31.4
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 8.8e-10 70.9 118 33.1
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 1.2e-09 70.5 253 24.1
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 1.2e-09 70.5 192 24.0
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.2e-09 70.5 193 27.5
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.2e-09 70.5 118 33.1
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.5e-09 70.1 118 32.2
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.5e-09 70.1 118 32.2
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 2.6e-09 69.3 118 32.2
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 2.6e-09 69.3 205 22.9
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 4.4e-09 68.6 205 23.4
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 4.4e-09 68.6 129 29.5
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 5.7e-09 68.2 118 32.2
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 5.7e-09 68.2 205 23.4
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 5.7e-09 68.2 143 29.4
MCO01G159 Micromonas commoda HOM05D050752 ORTHO05D269387 5.7e-09 68.2 154 34.4
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 7.5e-09 67.8 215 26.0
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 2.2e-08 66.2 205 24.4
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.8e-08 65.9 118 30.5
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 2.4e-07 62.8 118 29.7
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 3.1e-07 62.4 205 26.3
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 4.5e-06 58.5 248 26.6


User provided reference genes

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