Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 4.5e-121 438.0 224 100.0
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 9.3e-26 121.3 220 38.6
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 5.1e-24 115.5 223 36.8
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 1.1e-23 114.4 200 37.5
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 1.5e-23 114.0 197 37.6
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 1.5e-23 114.0 207 38.2
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 1.5e-23 114.0 209 37.8
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 1.5e-23 114.0 219 37.0
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 1.5e-23 114.0 215 38.1
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 2.5e-23 113.2 214 35.5
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 3.3e-23 112.8 212 36.8
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 3.3e-23 112.8 212 36.8
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 3.3e-23 112.8 222 36.0
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 3.3e-23 112.8 188 36.7
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 4.3e-23 112.5 208 37.5
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 4.3e-23 112.5 214 36.0
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 4.3e-23 112.5 214 36.4
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 4.3e-23 112.5 216 36.6
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 5.7e-23 112.1 207 38.2
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 5.7e-23 112.1 222 36.0
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 5.7e-23 112.1 213 37.1
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 9.6e-23 111.3 213 36.2
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 1.3e-22 110.9 207 37.7
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 1.3e-22 110.9 200 37.5
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 1.6e-22 110.5 218 36.7
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 1.6e-22 110.5 185 38.4
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 2.1e-22 110.2 212 35.4
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 2.1e-22 110.2 216 37.0
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 2.1e-22 110.2 226 37.2
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 2.1e-22 110.2 188 38.3
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 2.8e-22 109.8 207 36.7
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 2.8e-22 109.8 217 36.4
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 2.8e-22 109.8 220 37.3
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 2.8e-22 109.8 208 37.5
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 2.8e-22 109.8 217 35.9
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 3.7e-22 109.4 197 36.5
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 8.2e-22 108.2 207 36.7
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 8.2e-22 108.2 192 36.5
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 8.2e-22 108.2 215 37.2
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 1.1e-21 107.8 212 34.0
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.4e-21 107.5 215 35.8
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 1.4e-21 107.5 222 35.6
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 1.8e-21 107.1 196 34.2
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 1.8e-21 107.1 213 36.2
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.8e-21 107.1 214 35.5
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.8e-21 107.1 212 35.8
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 3.1e-21 106.3 210 35.7
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 3.1e-21 106.3 214 35.5
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 5.3e-21 105.5 206 35.9
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 9.0e-21 104.8 214 36.0
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 1.2e-20 104.4 205 37.1
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 1.2e-20 104.4 166 39.2
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 1.2e-20 104.4 222 35.6
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 1.2e-20 104.4 214 34.6
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 1.5e-20 104.0 216 35.2
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 1.5e-20 104.0 217 35.5
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 2.0e-20 103.6 216 36.1
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 2.6e-20 103.2 188 36.7
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 4.5e-20 102.4 211 33.2
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 7.6e-20 101.7 189 37.6
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 7.6e-20 101.7 215 35.8
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 7.6e-20 101.7 166 37.3
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 1.0e-19 101.3 217 35.0
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 1.0e-19 101.3 207 35.7
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 1.7e-19 100.5 169 38.5
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 2.2e-19 100.1 192 35.9
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 2.2e-19 100.1 198 33.8
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 2.9e-19 99.8 206 34.0
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 2.9e-19 99.8 142 41.5
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 2.9e-19 99.8 204 35.8
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 3.8e-19 99.4 166 38.6
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 6.5e-19 98.6 166 38.0
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 1.1e-18 97.8 207 34.8
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 1.1e-18 97.8 204 32.8
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 1.1e-18 97.8 218 34.9
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 1.9e-18 97.1 203 36.0
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 2.5e-18 96.7 192 35.9
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 2.5e-18 96.7 174 32.8
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 4.2e-18 95.9 186 36.0
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 5.5e-18 95.5 187 35.3
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 3.6e-17 92.8 134 41.8
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 6.1e-17 92.0 212 34.4
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 1.3e-16 90.9 139 41.0
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 3.9e-16 89.4 175 36.0
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 3.9e-16 89.4 158 39.9
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 5.1e-16 89.0 135 38.5
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 5.1e-16 89.0 138 40.6
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 1.1e-15 87.8 136 38.2
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 4.3e-15 85.9 222 32.0
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 6.3e-14 82.0 194 35.1
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 1.8e-13 80.5 151 37.7
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 2.9e-11 73.2 145 39.3
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 3.8e-11 72.8 145 38.6
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 2.5e-10 70.1 187 30.5
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 2.2e-06 57.0 106 40.6


User provided reference genes

Program Settings