Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G637 Micromonas commoda HOM05D006905 ORTHO05D003398 2.6e-119 432.2 238 100.0
Cre02.g095105 Chlamydomonas reinhardtii HOM05D006905 ORTHO05D003398 4.4e-58 228.8 189 63.5
Pp3c2_27980 Physcomitrium patens HOM05D006905 ORTHO05D003398 2.1e-36 156.8 142 50.0
SMO146G0019 Selaginella moellendorffii HOM05D006905 ORTHO05D003398 2.7e-31 139.8 141 44.7
AagrBONN_evm.TU.Sc2ySwM_344.4395 Anthoceros agrestis HOM05D006905 ORTHO05D003398 7.8e-31 138.3 194 39.7
CBR_g23482 Chara braunii HOM05D006905 ORTHO05D003398 1.7e-30 137.1 144 41.7
CBR_g23481 Chara braunii HOM05D006905 ORTHO05D003398 4.3e-29 132.5 141 41.8
Mapoly0011s0142 Marchantia polymorpha HOM05D006905 ORTHO05D003398 9.6e-29 131.3 180 40.6
PRCOL_00001415 Prasinoderma coloniale HOM05D027288 ORTHO05D030202 9.6e-21 104.8 112 42.0
SEGI_20676 Sequoiadendron giganteum HOM05D063978 ORTHO05D003398 2.0e-18 97.1 76 51.3
SEGI_40172 Sequoiadendron giganteum HOM05D063978 ORTHO05D003398 2.0e-18 97.1 76 51.3
TWI56G1496 Tripterygium wilfordii HOM05D006905 ORTHO05D003398 2.9e-17 93.2 147 38.1
TAR636G1711 Trochodendron aralioides HOM05D006905 ORTHO05D003398 6.4e-17 92.0 126 40.5
Cfa006463 Carpinus fangiana HOM05D006905 ORTHO05D003398 8.4e-17 91.7 154 37.0
FAN14G2439 Fragaria x ananassa HOM05D006905 ORTHO05D003398 8.4e-17 91.7 146 39.0
Aqoxy5G00478 Aquilegia oxysepala HOM05D006905 ORTHO05D003398 1.1e-16 91.3 125 36.8
HanXRQChr12g0384101 Helianthus annuus HOM05D006905 ORTHO05D003398 1.9e-16 90.5 126 38.9
Manes.09G156000 Manihot esculenta HOM05D006905 ORTHO05D003398 2.4e-16 90.1 173 33.5
FAN05G2111 Fragaria x ananassa HOM05D006905 ORTHO05D003398 3.2e-16 89.7 144 36.8
Pp3c24_12540 Physcomitrium patens HOM05D006905 ORTHO05D003398 3.2e-16 89.7 194 33.5
Cpa.g.sc117.65 Carica papaya HOM05D006905 ORTHO05D003398 4.2e-16 89.4 128 40.6
FAN09G1595 Fragaria x ananassa HOM05D006905 ORTHO05D003398 4.2e-16 89.4 147 36.7
CANSAT54G0047 Cannabis sativa HOM05D006905 ORTHO05D003398 5.4e-16 89.0 151 38.4
Atru.chr2.731 Acer truncatum HOM05D006905 ORTHO05D003398 1.2e-15 87.8 124 38.7
Atru.chr2.743 Acer truncatum HOM05D006905 ORTHO05D003398 1.2e-15 87.8 124 38.7
AL3G15180 Arabidopsis lyrata HOM05D006905 ORTHO05D003398 1.2e-15 87.8 148 35.8
BolC5t34896H Brassica oleracea HOM05D006905 ORTHO05D003398 1.2e-15 87.8 162 33.3
Sc20g0000270 Simmondsia chinensis HOM05D006905 ORTHO05D003398 1.2e-15 87.8 153 35.3
Carub.0003s0409 Capsella rubella HOM05D006905 ORTHO05D003398 1.6e-15 87.4 126 36.5
MBI04_g20814_MAGBIO Magnolia biondii HOM05D006905 ORTHO05D003398 1.6e-15 87.4 145 39.3
RcHm_v2.0_Chr3g0451941 Rosa chinensis HOM05D006905 ORTHO05D003398 1.6e-15 87.4 166 36.1
AT3G04890 Arabidopsis thaliana HOM05D006905 ORTHO05D003398 2.1e-15 87.0 148 36.5
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 2.7e-15 86.7 132 40.2
Migut.N01907 Erythranthe guttata HOM05D006905 ORTHO05D003398 2.7e-15 86.7 208 31.7
Nn4g26306 Nelumbo nucifera HOM05D006905 ORTHO05D003398 2.7e-15 86.7 154 36.4
FvH4_6g03440 Fragaria vesca HOM05D006905 ORTHO05D003398 3.5e-15 86.3 130 38.5
Lsat_1_v5_gn_3_28040 Lactuca sativa HOM05D006905 ORTHO05D003398 3.5e-15 86.3 126 36.5
SGA_v2.0_scaffold5G02928 Striga asiatica HOM05D006905 ORTHO05D003398 3.5e-15 86.3 162 35.2
CiPaw.07G006400 Carya illinoinensis HOM05D006905 ORTHO05D003398 4.6e-15 85.9 152 36.2
Thhalv10021425m.g Eutrema salsugineum HOM05D006905 ORTHO05D003398 4.6e-15 85.9 165 33.3
FAN02G2898 Fragaria x ananassa HOM05D006905 ORTHO05D003398 4.6e-15 85.9 144 36.1
MD04G1220800 Malus domestica HOM05D006905 ORTHO05D003398 4.6e-15 85.9 124 39.5
Eucgr.B01715 Eucalyptus grandis HOM05D006905 ORTHO05D003398 6.0e-15 85.5 174 35.6
Prupe.6G339800 Prunus persica HOM05D006905 ORTHO05D003398 7.9e-15 85.1 126 38.1
unitig_8.g4913 Utricularia gibba HOM05D006905 ORTHO05D003398 7.9e-15 85.1 129 40.3
BcaC05g30566 Brassica carinata HOM05D006905 ORTHO05D003398 1.0e-14 84.7 119 36.1
Glyma.10G160600 Glycine max HOM05D006905 ORTHO05D003398 1.0e-14 84.7 162 34.6
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 1.0e-14 84.7 128 37.5
Potri.013G036500 Populus trichocarpa HOM05D006905 ORTHO05D003398 1.0e-14 84.7 174 33.9
CARHR079160 Cardamine hirsuta HOM05D006905 ORTHO05D003398 1.3e-14 84.3 126 35.7
Ciclev10002392m.g Citrus clementina HOM05D006905 ORTHO05D003398 1.3e-14 84.3 153 34.6
PGR083G0691 Punica granatum HOM05D006905 ORTHO05D003398 1.3e-14 84.3 123 39.0
A05p42710 Brassica napus HOM05D006905 ORTHO05D003398 1.8e-14 84.0 119 37.0
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 1.8e-14 84.0 119 40.3
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 1.8e-14 84.0 128 37.5
QL03p024500 Quercus lobata HOM05D006905 ORTHO05D003398 1.8e-14 84.0 155 35.5
arahy.Tifrunner.gnm1.ann1.PI1FXK Arachis hypogaea HOM05D006905 ORTHO05D003398 2.3e-14 83.6 125 40.0
Sp3g03710 Schrenkiella parvula HOM05D006905 ORTHO05D003398 2.3e-14 83.6 141 36.2
BraA05t22982Z Brassica rapa HOM05D006905 ORTHO05D003398 3.0e-14 83.2 149 34.2
Nitab4.5_0013433g0040 Nicotiana tabacum HOM05D006905 ORTHO05D003398 3.9e-14 82.8 121 38.0
Phvul.007G186100 Phaseolus vulgaris HOM05D006905 ORTHO05D003398 3.9e-14 82.8 126 37.3
PGR083G1281 Punica granatum HOM05D006905 ORTHO05D003398 5.1e-14 82.4 125 39.2
Sed0006348 Sechium edule HOM05D006905 ORTHO05D003398 5.1e-14 82.4 128 39.1
BcaNung06537 Brassica carinata HOM05D006905 ORTHO05D003398 6.7e-14 82.0 141 33.3
C05p62430 Brassica napus HOM05D006905 ORTHO05D003398 6.7e-14 82.0 141 33.3
Eucgr.L02187 Eucalyptus grandis HOM05D006905 ORTHO05D003398 6.7e-14 82.0 176 35.8
VMungo0720G0828 Vigna mungo HOM05D006905 ORTHO05D003398 6.7e-14 82.0 126 36.5
SEGI_10814 Sequoiadendron giganteum HOM05D006905 ORTHO05D003398 8.7e-14 81.6 122 35.2
ATR0737G167 Amborella trichopoda HOM05D006905 ORTHO05D003398 1.1e-13 81.3 153 36.6
THA.LOC104802823 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 1.1e-13 81.3 131 39.7
Thecc.05G193600 Theobroma cacao HOM05D006905 ORTHO05D003398 1.1e-13 81.3 125 37.6
CsaV3_2G004310 Cucumis sativus L. HOM05D006905 ORTHO05D003398 1.5e-13 80.9 185 32.4
Dinv11554 Davidia involucrata HOM05D006905 ORTHO05D003398 1.9e-13 80.5 126 38.9
Nitab4.5_0002361g0060 Nicotiana tabacum HOM05D006905 ORTHO05D003398 1.9e-13 80.5 121 38.8
Hund22112 Selenicereus undatus HOM05D006905 ORTHO05D003398 1.9e-13 80.5 166 30.7
GSVIVG01021847001 Vitis vinifera HOM05D006905 ORTHO05D003398 1.9e-13 80.5 204 32.4
CAN.G134.166 Capsicum annuum HOM05D006905 ORTHO05D003398 2.5e-13 80.1 122 39.3
Lalb_Chr06g0167991 Lupinus albus HOM05D006905 ORTHO05D003398 3.3e-13 79.7 121 38.8
Aa31LG5G15280 Aethionema arabicum HOM05D006905 ORTHO05D003398 4.3e-13 79.3 146 32.2
Peaxi162Scf00404g00025 Petunia axillaris HOM05D006905 ORTHO05D003398 4.3e-13 79.3 123 34.1
SalBow8G0693 Salvia bowleyana HOM05D006905 ORTHO05D003398 4.3e-13 79.3 155 31.6
Solyc01g097820.4 Solanum lycopersicum HOM05D006905 ORTHO05D003398 4.3e-13 79.3 122 38.5
Sopen01g041420 Solanum pennellii HOM05D006905 ORTHO05D003398 4.3e-13 79.3 122 38.5
PGSC0003DMG400022508 Solanum tuberosum HOM05D006905 ORTHO05D003398 4.3e-13 79.3 154 35.7
ECA246G1419 Erigeron canadensis HOM05D006905 ORTHO05D003398 5.6e-13 79.0 126 35.7
vmacro05070 Vaccinium macrocarpon HOM05D006905 ORTHO05D003398 5.6e-13 79.0 124 34.7
TPR.G11158 Trifolium pratense HOM05D006905 ORTHO05D003398 1.6e-12 77.4 121 36.4
EL10Ac4g09180 Beta vulgaris HOM05D006905 ORTHO05D003398 2.1e-12 77.0 157 30.6
Actinidia30925 Actinidia chinensis HOM05D006905 ORTHO05D003398 2.8e-12 76.6 127 35.4
THA.LOC104802824 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 4.0e-11 72.8 128 37.5
Ah.05g180250 Amaranthus hybridus HOM05D007525 ORTHO05D003398 9.0e-11 71.6 180 29.4
TWI59G1390 Tripterygium wilfordii HOM05D007525 ORTHO05D003398 9.0e-11 71.6 160 30.0
AL4G45330 Arabidopsis lyrata HOM05D007525 ORTHO05D003398 1.2e-10 71.2 135 28.9
Cfa003884 Carpinus fangiana HOM05D007525 ORTHO05D003398 1.5e-10 70.9 137 31.4
Atru.chr5.548 Acer truncatum HOM05D007525 ORTHO05D003398 2.0e-10 70.5 169 29.0
CANSAT56G0175 Cannabis sativa HOM05D007525 ORTHO05D003398 2.0e-10 70.5 133 30.1
Oeu036594.1 Olea europaea HOM05D007525 ORTHO05D003398 4.5e-10 69.3 131 29.8
TAR636G1192 Trochodendron aralioides HOM05D007525 ORTHO05D003398 5.8e-10 68.9 163 27.6
Zm00001eb073280 Zea mays HOM05D007525 ORTHO05D003398 5.8e-10 68.9 172 28.5
Manes.05G030450 Manihot esculenta HOM05D007525 ORTHO05D003398 7.6e-10 68.6 163 26.4
Solyc01g095000.3 Solanum lycopersicum HOM05D007525 ORTHO05D003398 1.0e-09 68.2 140 29.3
Mapoly0153s0018 Marchantia polymorpha HOM05D007525 ORTHO05D003398 1.3e-09 67.8 151 29.1
ATR0661G217 Amborella trichopoda HOM05D007525 ORTHO05D003398 1.7e-09 67.4 152 27.0
vmacro13241 Vaccinium macrocarpon HOM05D007525 ORTHO05D003398 1.7e-09 67.4 139 31.7
CAN.G78.117 Capsicum annuum HOM05D007525 ORTHO05D003398 2.2e-09 67.0 140 28.6
Cc00_g17820 Coffea canephora HOM05D007525 ORTHO05D003398 2.2e-09 67.0 137 29.9
Thhalv10001607m.g Eutrema salsugineum HOM05D007525 ORTHO05D003398 2.2e-09 67.0 135 27.4
Sopen01g038780 Solanum pennellii HOM05D007525 ORTHO05D003398 2.9e-09 66.6 140 28.6
AT2G46100 Arabidopsis thaliana HOM05D007525 ORTHO05D003398 3.8e-09 66.2 135 27.4
Carub.0004s2880 Capsella rubella HOM05D007525 ORTHO05D003398 3.8e-09 66.2 135 27.4
CDE12G0297 Ceratophyllum demersum HOM05D007525 ORTHO05D003398 3.8e-09 66.2 144 27.1
Lj7A509T109 Lonicera japonica HOM05D007525 ORTHO05D003398 3.8e-09 66.2 151 27.2
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.9e-09 65.9 155 27.7
Gohir.D07G146200 Gossypium hirsutum HOM05D007525 ORTHO05D003398 6.4e-09 65.5 148 27.7
Gorai.001G158400 Gossypium raimondii HOM05D007525 ORTHO05D003398 6.4e-09 65.5 148 27.7
PSO478G5123 Papaver somniferum HOM05D007525 ORTHO05D003398 6.4e-09 65.5 155 26.5
Potri.002G162800 Populus trichocarpa HOM05D007525 ORTHO05D003398 6.4e-09 65.5 153 26.8
MELO3C021185.2 Cucumis melo HOM05D007525 ORTHO05D003398 8.4e-09 65.1 150 29.3
Migut.N01460 Erythranthe guttata HOM05D007525 ORTHO05D003398 8.4e-09 65.1 120 29.2
Peaxi162Scf00020g00126 Petunia axillaris HOM05D007525 ORTHO05D003398 8.4e-09 65.1 140 26.4
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 1.1e-08 64.7 120 29.2
CsaV3_6G000860 Cucumis sativus L. HOM05D007525 ORTHO05D003398 1.1e-08 64.7 150 28.7
FvH4_7g15085 Fragaria vesca HOM05D007525 ORTHO05D003398 1.1e-08 64.7 169 27.8
Nitab4.5_0000915g0170 Nicotiana tabacum HOM05D007525 ORTHO05D003398 1.1e-08 64.7 140 26.4
ClCG06G003450 Citrullus lanatus HOM05D007525 ORTHO05D003398 1.4e-08 64.3 129 30.2
Ciclev10022006m.g Citrus clementina HOM05D007525 ORTHO05D003398 1.4e-08 64.3 164 26.8
Duzib133G0712 Durio zibethinus HOM05D007525 ORTHO05D003398 1.4e-08 64.3 150 26.0
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-08 64.3 169 29.0
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-08 64.3 169 29.0
Gohir.A07G140800 Gossypium hirsutum HOM05D007525 ORTHO05D003398 1.4e-08 64.3 148 27.7
Nitab4.5_0010703g0010 Nicotiana tabacum HOM05D007525 ORTHO05D003398 1.4e-08 64.3 140 27.1
Sabra02G0147700 Salix brachista HOM05D007525 ORTHO05D003398 1.4e-08 64.3 154 26.0
GSVIVG01026980001 Vitis vinifera HOM05D007525 ORTHO05D003398 1.4e-08 64.3 170 28.2
MCO09G649 Micromonas commoda HOM05D006905 ORTHO05D003398 1.9e-08 63.9 141 27.0
PRCOL_00001703 Prasinoderma coloniale HOM05D007525 ORTHO05D003398 1.9e-08 63.9 154 30.5
RcHm_v2.0_Chr1g0357281 Rosa chinensis HOM05D007525 ORTHO05D003398 1.9e-08 63.9 171 28.1
Medtr8g028545 Medicago truncatula HOM05D007525 ORTHO05D003398 2.5e-08 63.5 135 27.4
Prupe.2G175600 Prunus persica HOM05D007525 ORTHO05D003398 2.5e-08 63.5 176 27.3
PGR042G3120 Punica granatum HOM05D007525 ORTHO05D003398 3.2e-08 63.2 120 29.2
Rhsim07G0011500 Rhododendron simsii HOM05D001943 ORTHO05D001969 3.2e-08 63.2 130 31.5
PGSC0003DMG400000187 Solanum tuberosum HOM05D007525 ORTHO05D003398 3.2e-08 63.2 180 27.8
Thecc.01G354100 Theobroma cacao HOM05D007525 ORTHO05D003398 3.2e-08 63.2 148 27.0
TPR.G28291 Trifolium pratense HOM05D007525 ORTHO05D003398 4.2e-08 62.8 137 27.0
MSTRG.4841 Avicennia marina HOM05D007525 ORTHO05D003398 5.5e-08 62.4 185 25.4
AagrBONN_evm.TU.Sc2ySwM_117.1949 Anthoceros agrestis HOM05D006905 ORTHO05D003398 7.1e-08 62.0 120 30.8
EL10Ac1g00368 Beta vulgaris HOM05D007525 ORTHO05D003398 7.1e-08 62.0 180 26.7
Lj3g0004891 Lotus japonicus HOM05D007525 ORTHO05D003398 7.1e-08 62.0 137 27.0
Psat4g157560 Pisum sativum HOM05D007525 ORTHO05D003398 7.1e-08 62.0 181 26.5
SalBow5G0215 Salvia bowleyana HOM05D007525 ORTHO05D003398 7.1e-08 62.0 177 26.0
HPP92_021017 Vanilla planifolia HOM05D007525 ORTHO05D003398 7.1e-08 62.0 138 26.1
A05p06060 Brassica napus HOM05D007525 ORTHO05D003398 9.3e-08 61.6 135 26.7
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 9.3e-08 61.6 135 25.9
Cc02_g31660 Coffea canephora HOM05D006905 ORTHO05D003398 9.3e-08 61.6 142 29.6
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 9.3e-08 61.6 125 29.6
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 1.2e-07 61.2 135 25.9
CSS0017923 Camellia sinensis var. sinensis HOM05D006905 ORTHO05D003398 1.6e-07 60.8 147 31.3
CSS0031135 Camellia sinensis var. sinensis HOM05D007525 ORTHO05D003398 1.6e-07 60.8 138 29.0
Cpa.g.sc184.25 Carica papaya HOM05D007525 ORTHO05D003398 1.6e-07 60.8 129 27.1
AUR62022606 Chenopodium quinoa HOM05D007525 ORTHO05D003398 1.6e-07 60.8 181 26.5
Ca_03496_v3 Cicer arietinum L. HOM05D007525 ORTHO05D003398 1.6e-07 60.8 135 26.7
Aqoxy7G00302 Aquilegia oxysepala HOM05D007525 ORTHO05D003398 2.1e-07 60.5 138 27.5
MD01G1069500 Malus domestica HOM05D007525 ORTHO05D003398 2.1e-07 60.5 161 27.3
MCO06G228 Micromonas commoda HOM05D006905 ORTHO05D003398 2.1e-07 60.5 143 26.6
VMungo0331G0679 Vigna mungo HOM05D007525 ORTHO05D003398 2.1e-07 60.5 135 26.7
SGA_v2.0_scaffold43G16396 Striga asiatica HOM05D007525 ORTHO05D003398 2.7e-07 60.1 194 25.8
ECA240G1228 Erigeron canadensis HOM05D007525 ORTHO05D003398 3.5e-07 59.7 137 27.7
Nn1g01647 Nelumbo nucifera HOM05D007525 ORTHO05D003398 3.5e-07 59.7 163 25.2
HanXRQChr03g0093451 Helianthus annuus HOM05D007525 ORTHO05D003398 6.0e-07 58.9 139 29.5
Actinidia10060 Actinidia chinensis HOM05D007525 ORTHO05D003398 7.9e-07 58.5 168 26.8
unitig_22.g6725 Utricularia gibba HOM05D007525 ORTHO05D003398 1.0e-06 58.2 167 25.7
Pp3c4_17920 Physcomitrium patens HOM05D007525 ORTHO05D003398 1.8e-06 57.4 130 27.7
DCAR_025212 Daucus carota HOM05D001555 ORTHO05D001616 2.3e-06 57.0 121 28.1
Eucgr.E00102 Eucalyptus grandis HOM05D007525 ORTHO05D003398 2.3e-06 57.0 161 25.5
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.3e-06 57.0 126 29.4
COL.COLO4_12762 Corchorus olitorius HOM05D007525 ORTHO05D003398 3.0e-06 56.6 146 27.4
Lalb_Chr10g0096641 Lupinus albus HOM05D007525 ORTHO05D003398 3.0e-06 56.6 133 26.3
PRCOL_00006625 Prasinoderma coloniale HOM05D007525 ORTHO05D003398 5.1e-06 55.8 137 24.1
Os04g0578200 Oryza sativa ssp. japonica HOM05D007525 ORTHO05D003398 6.7e-06 55.5 154 27.9


User provided reference genes

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