Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 1.3e-70 269.6 133 100.0
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 1.1e-18 97.1 103 49.5
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.5e-18 96.7 103 49.5
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 7.2e-18 94.4 106 48.1
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 2.1e-17 92.8 119 45.4
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 2.8e-17 92.4 94 51.1
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 4.7e-17 91.7 111 47.7
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 6.1e-17 91.3 111 47.7
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 8.0e-17 90.9 103 46.6
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 1.4e-16 90.1 103 47.6
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 1.4e-16 90.1 103 47.6
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 1.4e-16 90.1 94 50.0
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 2.3e-16 89.4 119 44.5
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 2.3e-16 89.4 119 45.4
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.3e-16 89.4 119 45.4
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.3e-16 89.4 119 45.4
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 2.3e-16 89.4 94 51.1
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 3.0e-16 89.0 119 46.2
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.0e-16 89.0 119 45.4
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 3.0e-16 89.0 119 42.9
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 4.0e-16 88.6 103 45.6
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 4.0e-16 88.6 94 48.9
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 4.0e-16 88.6 103 45.6
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 5.2e-16 88.2 111 45.9
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 5.2e-16 88.2 119 43.7
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 5.2e-16 88.2 103 45.6
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 6.8e-16 87.8 94 52.1
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 6.8e-16 87.8 119 42.9
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 6.8e-16 87.8 131 38.9
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 6.8e-16 87.8 128 43.8
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 6.8e-16 87.8 119 44.5
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 8.9e-16 87.4 119 43.7
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 8.9e-16 87.4 119 44.5
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.5e-15 86.7 94 48.9
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 1.5e-15 86.7 119 42.9
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.5e-15 86.7 94 50.0
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.5e-15 86.7 119 42.9
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.5e-15 86.7 103 45.6
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.5e-15 86.7 131 42.7
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 2.0e-15 86.3 94 48.9
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 2.0e-15 86.3 94 48.9
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.0e-15 86.3 119 42.9
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 2.6e-15 85.9 103 44.7
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 2.6e-15 85.9 103 44.7
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 2.6e-15 85.9 94 47.9
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 3.4e-15 85.5 103 44.7
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 3.4e-15 85.5 119 41.2
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 3.4e-15 85.5 94 50.0
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 3.4e-15 85.5 94 50.0
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 3.4e-15 85.5 103 42.7
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.4e-15 85.5 94 48.9
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 3.4e-15 85.5 94 48.9
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.4e-15 85.5 119 42.9
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 3.4e-15 85.5 119 42.0
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 4.4e-15 85.1 103 44.7
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 4.4e-15 85.1 94 47.9
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 4.4e-15 85.1 94 47.9
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 4.4e-15 85.1 119 42.9
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.4e-15 85.1 119 43.7
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.4e-15 85.1 119 43.7
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 4.4e-15 85.1 94 48.9
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 5.7e-15 84.7 94 47.9
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 5.7e-15 84.7 94 47.9
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 5.7e-15 84.7 94 47.9
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 5.7e-15 84.7 94 47.9
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 5.7e-15 84.7 94 47.9
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 5.7e-15 84.7 94 47.9
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 5.7e-15 84.7 94 47.9
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 5.7e-15 84.7 120 44.2
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 5.7e-15 84.7 94 47.9
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 5.7e-15 84.7 103 45.6
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 5.7e-15 84.7 94 48.9
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 5.7e-15 84.7 103 46.6
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 5.7e-15 84.7 103 46.6
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 5.7e-15 84.7 119 42.9
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 7.5e-15 84.3 119 42.9
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 7.5e-15 84.3 94 48.9
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 7.5e-15 84.3 94 47.9
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 9.8e-15 84.0 94 45.7
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 9.8e-15 84.0 94 45.7
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 9.8e-15 84.0 94 47.9
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 1.3e-14 83.6 94 46.8
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 1.3e-14 83.6 94 46.8
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 1.3e-14 83.6 94 48.9
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 1.3e-14 83.6 103 42.7
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 1.3e-14 83.6 95 47.4
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 1.7e-14 83.2 94 47.9
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 1.7e-14 83.2 124 41.1
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.7e-14 83.2 119 42.0
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.7e-14 83.2 94 48.9
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 2.2e-14 82.8 94 46.8
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 2.2e-14 82.8 94 46.8
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 2.2e-14 82.8 94 46.8
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 2.2e-14 82.8 94 46.8
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 2.2e-14 82.8 94 46.8
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.8e-14 82.4 119 42.9
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 2.8e-14 82.4 103 44.7
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 3.7e-14 82.0 94 45.7
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 3.7e-14 82.0 94 45.7
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 3.7e-14 82.0 94 45.7
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.7e-14 82.0 94 47.9
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 6.3e-14 81.3 94 45.7
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 6.3e-14 81.3 94 45.7
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 6.3e-14 81.3 103 44.7
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 6.3e-14 81.3 120 39.2
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 8.3e-14 80.9 95 47.4
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 1.8e-13 79.7 91 47.3
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 2.4e-13 79.3 118 41.5
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.4e-13 79.3 95 47.4
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 7.0e-13 77.8 94 46.8
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 9.2e-13 77.4 91 46.2
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 9.2e-13 77.4 103 41.7
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.6e-12 76.6 94 43.6
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 2.7e-12 75.9 91 46.2
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 6.6e-11 71.2 104 42.3
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 8.6e-11 70.9 104 42.3
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 3.3e-10 68.9 108 40.7
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 3.3e-10 68.9 93 43.0
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 9.5e-10 67.4 79 48.1
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 1.2e-09 67.0 79 48.1
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 1.2e-09 67.0 79 48.1
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.6e-09 66.6 79 48.1
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 2.1e-09 66.2 94 39.4
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 2.1e-09 66.2 115 36.5
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 2.8e-09 65.9 79 48.1
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.7e-09 65.1 79 48.1
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 6.1e-09 64.7 79 45.6
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 8.0e-09 64.3 107 41.1
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 8.0e-09 64.3 88 44.3
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 3.4e-07 58.9 82 46.3
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.7e-06 56.6 119 34.5
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.9e-06 55.8 95 40.0


User provided reference genes

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