Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G492 Micromonas commoda HOM05D018993 ORTHO05D020435 1.8e-229 798.9 393 100.0
PRCOL_00005491 Prasinoderma coloniale HOM05D018993 ORTHO05D020435 1.2e-44 184.9 382 35.1
Cre10.g449020 Chlamydomonas reinhardtii HOM05D018993 ORTHO05D020435 6.2e-41 172.6 494 28.9
Pp3s30_900 Physcomitrium patens HOM05D018993 ORTHO05D020435 5.4e-29 132.9 325 29.8
Pp3s30_890 Physcomitrium patens HOM05D018993 ORTHO05D020435 1.3e-27 128.3 337 25.5
Ca_29239_v3 Cicer arietinum L. HOM05D000658 ORTHO05D020435 2.1e-20 104.4 282 29.1
Pp3s42_170 Physcomitrium patens HOM05D018993 ORTHO05D020435 5.3e-16 89.7 319 23.2
PRCOL_00006466 Prasinoderma coloniale HOM05D058914 ORTHO05D044248 1.4e-13 81.6 384 22.7
Pp3s32_180 Physcomitrium patens HOM05D016182 ORTHO05D312539 5.5e-13 79.7 288 22.9
Zm00001eb113920 Zea mays HOM05D000658 ORTHO05D000826 2.7e-12 77.4 385 26.0
Mapoly0034s0060 Marchantia polymorpha HOM05D000418 ORTHO05D000317 3.9e-11 73.6 345 24.3
PRCOL_00004854 Prasinoderma coloniale HOM05D003605 ORTHO05D004292 3.9e-11 73.6 306 25.8
Zm00001eb201770 Zea mays HOM05D000658 ORTHO05D000826 7.4e-10 69.3 337 23.7
Sabra16G0259400 Salix brachista HOM05D000658 ORTHO05D000826 2.8e-09 67.4 216 26.4
VMungo0251G0042 Vigna mungo HOM05D000658 ORTHO05D000826 2.8e-09 67.4 216 27.3
Migut.M00158 Erythranthe guttata HOM05D000658 ORTHO05D000826 3.7e-09 67.0 312 24.7
Prupe.4G174400 Prunus persica HOM05D000658 ORTHO05D000826 8.2e-09 65.9 218 26.6
arahy.Tifrunner.gnm1.ann1.HZ04KR Arachis hypogaea HOM05D000658 ORTHO05D000826 1.1e-08 65.5 215 26.0
Cfa027236 Carpinus fangiana HOM05D012678 ORTHO05D028651 1.1e-08 65.5 335 25.7
Lalb_Chr14g0367091 Lupinus albus HOM05D000658 ORTHO05D000826 1.1e-08 65.5 225 26.7
TAR626G0287 Trochodendron aralioides HOM05D000658 ORTHO05D000826 1.1e-08 65.5 253 25.7
FAN05G5518 Fragaria x ananassa HOM05D000658 ORTHO05D000826 1.4e-08 65.1 211 25.6
FAN21G0951 Fragaria x ananassa HOM05D000658 ORTHO05D000826 1.4e-08 65.1 217 25.8
AUR62036156 Chenopodium quinoa HOM05D000658 ORTHO05D000826 2.4e-08 64.3 229 27.9
COL.COLO4_18018 Corchorus olitorius HOM05D000658 ORTHO05D000826 2.4e-08 64.3 238 28.6
FAN16G2013 Fragaria x ananassa HOM05D000658 ORTHO05D000826 2.4e-08 64.3 217 24.4
Lj1C838T10 Lonicera japonica HOM05D000658 ORTHO05D000826 2.4e-08 64.3 360 25.0
Manes.03G105500 Manihot esculenta HOM05D000658 ORTHO05D000826 2.4e-08 64.3 211 26.5
PGR083G0227 Punica granatum HOM05D000658 ORTHO05D000826 3.1e-08 63.9 213 28.2
THA.LOC104811878 Tarenaya hassleriana HOM05D000658 ORTHO05D000826 3.1e-08 63.9 215 27.0
Cre14.g608700 Chlamydomonas reinhardtii HOM05D058914 ORTHO05D044248 4.0e-08 63.5 346 22.0
Eucgr.K00141 Eucalyptus grandis HOM05D000418 ORTHO05D000317 4.0e-08 63.5 352 22.4
Medtr8g061360 Medicago truncatula HOM05D000658 ORTHO05D000826 4.0e-08 63.5 342 24.6
Pp3c20_8270 Physcomitrium patens HOM05D004697 ORTHO05D006015 4.0e-08 63.5 375 22.4
SGA_v2.0_scaffold73G24229 Striga asiatica HOM05D000658 ORTHO05D000826 4.0e-08 63.5 213 26.3
Atru.chr6.2883 Acer truncatum HOM05D000658 ORTHO05D000826 5.3e-08 63.2 221 25.3
Atru.chr6.2944 Acer truncatum HOM05D000658 ORTHO05D000826 5.3e-08 63.2 221 25.3
AUR62019479 Chenopodium quinoa HOM05D000658 ORTHO05D000826 5.3e-08 63.2 229 27.9
Eucgr.F01171 Eucalyptus grandis HOM05D000658 ORTHO05D000826 5.3e-08 63.2 242 25.6
Actinidia30459 Actinidia chinensis HOM05D000658 ORTHO05D000826 6.9e-08 62.8 176 26.7
Duzib213G0107 Durio zibethinus HOM05D000658 ORTHO05D000826 6.9e-08 62.8 235 28.1
FvH4_6g26610 Fragaria vesca HOM05D000658 ORTHO05D000826 6.9e-08 62.8 214 24.8
PRCOL_00005041 Prasinoderma coloniale HOM05D003605 ORTHO05D004292 6.9e-08 62.8 377 22.8
Cpa.g.sc83.81 Carica papaya HOM05D000658 ORTHO05D000826 9.0e-08 62.4 299 23.1
Migut.M00778 Erythranthe guttata HOM05D000658 ORTHO05D000826 9.0e-08 62.4 218 25.7
MD03G1234800 Malus domestica HOM05D000658 ORTHO05D000826 9.0e-08 62.4 217 25.3
RcHm_v2.0_Chr5g0032401 Rosa chinensis HOM05D000658 ORTHO05D000826 9.0e-08 62.4 217 24.9
FAN14G4433 Fragaria x ananassa HOM05D000658 ORTHO05D000826 1.2e-07 62.0 214 24.8
Gohir.A13G147200 Gossypium hirsutum HOM05D000658 ORTHO05D000826 1.2e-07 62.0 234 26.5
TWI59G0739 Tripterygium wilfordii HOM05D000658 ORTHO05D000826 1.2e-07 62.0 296 23.6
Haze_09407 Corylus avellana HOM05D000658 ORTHO05D000826 1.5e-07 61.6 235 27.2
Dinv20206 Davidia involucrata HOM05D000658 ORTHO05D000826 1.5e-07 61.6 286 25.2
Lj8C108G16 Lonicera japonica HOM05D000658 ORTHO05D000826 1.5e-07 61.6 293 25.6
QL08p023827 Quercus lobata HOM05D000658 ORTHO05D000826 1.5e-07 61.6 220 28.6
FAN02G3520 Fragaria x ananassa HOM05D000658 ORTHO05D000826 2.0e-07 61.2 214 24.8
FAN09G0523 Fragaria x ananassa HOM05D000658 ORTHO05D000826 2.0e-07 61.2 214 24.8
SalBow7G1182 Salvia bowleyana HOM05D000658 ORTHO05D000826 2.0e-07 61.2 290 25.2
TWI38G1345 Tripterygium wilfordii HOM05D000658 ORTHO05D000826 2.0e-07 61.2 179 29.6
Cc05_g11710 Coffea canephora HOM05D000658 ORTHO05D000826 2.6e-07 60.8 213 26.3
Glyma.12G205900 Glycine max HOM05D000658 ORTHO05D000826 2.6e-07 60.8 210 26.2
Gohir.D13G152212 Gossypium hirsutum HOM05D000658 ORTHO05D000826 2.6e-07 60.8 234 26.5
Gorai.013G171600 Gossypium raimondii HOM05D000658 ORTHO05D000826 2.6e-07 60.8 234 26.5
Potri.017G014200 Populus trichocarpa HOM05D000658 ORTHO05D000826 2.6e-07 60.8 299 23.4
AL7G24150 Arabidopsis lyrata HOM05D000658 ORTHO05D000826 3.4e-07 60.5 218 25.2
Thecc.07G097100 Theobroma cacao HOM05D000658 ORTHO05D000826 3.4e-07 60.5 235 27.2
TPR.G6384 Trifolium pratense HOM05D000658 ORTHO05D000826 3.4e-07 60.5 226 26.1
Os11g0552000 Oryza sativa ssp. japonica HOM05D000658 ORTHO05D000826 4.5e-07 60.1 176 27.3
MSTRG.6818 Avicennia marina HOM05D000658 ORTHO05D000826 5.8e-07 59.7 222 25.7
AUR62038977 Chenopodium quinoa HOM05D000658 ORTHO05D000826 5.8e-07 59.7 215 23.3
Os02g0302700 Oryza sativa ssp. japonica HOM05D000658 ORTHO05D000826 5.8e-07 59.7 294 23.1
SalBow7G3431 Salvia bowleyana HOM05D000658 ORTHO05D000826 5.8e-07 59.7 239 26.4
Medtr2g090615 Medicago truncatula HOM05D000658 ORTHO05D000826 7.6e-07 59.3 210 26.2
Actinidia39324 Actinidia chinensis HOM05D000658 ORTHO05D000826 1.0e-06 58.9 228 25.9
EL10Ac9g20805 Beta vulgaris HOM05D000658 ORTHO05D000826 1.0e-06 58.9 208 23.6
AUR62036044 Chenopodium quinoa HOM05D000658 ORTHO05D000826 1.0e-06 58.9 173 26.6
Duzib052G0875 Durio zibethinus HOM05D000658 ORTHO05D000826 1.0e-06 58.9 175 26.9
Medtr1g087760 Medicago truncatula HOM05D002771 ORTHO05D003078 1.0e-06 58.9 252 23.0
TAR627G0701 Trochodendron aralioides HOM05D000658 ORTHO05D000826 1.0e-06 58.9 301 24.9
Ah.06g184710 Amaranthus hybridus HOM05D000658 ORTHO05D000826 1.3e-06 58.5 216 27.8
Ca_09439_v3 Cicer arietinum L. HOM05D000658 ORTHO05D000826 1.3e-06 58.5 214 26.2
Lj3g0024569 Lotus japonicus HOM05D000658 ORTHO05D000826 1.3e-06 58.5 210 26.2
Lj3g0024640 Lotus japonicus HOM05D000658 ORTHO05D000826 1.3e-06 58.5 210 25.2
PSO386G0036 Papaver somniferum HOM05D000658 ORTHO05D000826 1.3e-06 58.5 302 24.5
BcaNung01068 Brassica carinata HOM05D000658 ORTHO05D000826 1.7e-06 58.2 173 29.5
ECA233G3461 Erigeron canadensis HOM05D000658 ORTHO05D000826 1.7e-06 58.2 271 24.7
Thhalv10002017m.g Eutrema salsugineum HOM05D000658 ORTHO05D000826 1.7e-06 58.2 175 27.4
Lj3g0024753 Lotus japonicus HOM05D000658 ORTHO05D000826 1.7e-06 58.2 210 25.2
Os02g0302200 Oryza sativa ssp. japonica HOM05D000658 ORTHO05D000826 1.7e-06 58.2 200 24.5
GSVIVG01014286001 Vitis vinifera HOM05D000658 ORTHO05D000826 1.7e-06 58.2 216 27.8
Cc05_g07610 Coffea canephora HOM05D000658 ORTHO05D000826 2.2e-06 57.8 212 24.5
Duzib138G1237 Durio zibethinus HOM05D002771 ORTHO05D003078 2.2e-06 57.8 291 25.1
Lsat_1_v5_gn_8_133781 Lactuca sativa HOM05D000658 ORTHO05D000826 2.2e-06 57.8 171 26.3
TWI59G0836 Tripterygium wilfordii HOM05D000658 ORTHO05D000826 2.2e-06 57.8 182 24.2
TAR624G0248 Trochodendron aralioides HOM05D000658 ORTHO05D000826 2.2e-06 57.8 212 25.5
EL10Ac4g08249 Beta vulgaris HOM05D000658 ORTHO05D000826 2.9e-06 57.4 216 25.5
A01p14900 Brassica napus HOM05D000658 ORTHO05D000826 2.9e-06 57.4 173 29.5
BraA01t01431Z Brassica rapa HOM05D000658 ORTHO05D000826 2.9e-06 57.4 173 29.5
Lalb_Chr03g0033051 Lupinus albus HOM05D000418 ORTHO05D000317 2.9e-06 57.4 351 23.4
TPR.G28173 Trifolium pratense HOM05D000658 ORTHO05D000826 2.9e-06 57.4 342 23.7
vmacro12332 Vaccinium macrocarpon HOM05D000658 ORTHO05D000826 2.9e-06 57.4 200 26.5
Ah.01g015380 Amaranthus hybridus HOM05D000658 ORTHO05D000826 3.8e-06 57.0 216 24.1
Carub.0007s1754 Capsella rubella HOM05D000658 ORTHO05D000826 3.8e-06 57.0 80 40.0
Haze_13219 Corylus avellana HOM05D000658 ORTHO05D000826 3.8e-06 57.0 175 25.1
Dinv10159 Davidia involucrata HOM05D000658 ORTHO05D000826 3.8e-06 57.0 299 24.4
Pp3c6_20820 Physcomitrium patens HOM05D002771 ORTHO05D003078 3.8e-06 57.0 228 23.2
Sp7g21520 Schrenkiella parvula HOM05D000658 ORTHO05D000826 3.8e-06 57.0 173 28.9
MSTRG.15134 Avicennia marina HOM05D000658 ORTHO05D000826 4.9e-06 56.6 198 25.3
HanXRQChr17g0541721 Helianthus annuus HOM05D000658 ORTHO05D000826 4.9e-06 56.6 172 26.7
GSVIVG01020592001 Vitis vinifera HOM05D000658 ORTHO05D000826 4.9e-06 56.6 174 26.4
SalBow7G0424 Salvia bowleyana HOM05D000658 ORTHO05D000826 6.5e-06 56.2 200 26.0
Sp3g33850 Schrenkiella parvula HOM05D000658 ORTHO05D000826 6.5e-06 56.2 217 23.5
Ciclev10008448m.g Citrus clementina HOM05D000658 ORTHO05D000826 8.4e-06 55.8 233 26.2
COL.COLO4_23274 Corchorus olitorius HOM05D002771 ORTHO05D003078 8.4e-06 55.8 209 23.4


User provided reference genes

Program Settings