Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 9.1e-134 480.3 257 100.0
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 9.1e-134 480.3 257 100.0
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 3.4e-24 116.3 227 37.0
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 2.2e-23 113.6 227 34.4
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 5.0e-23 112.5 221 36.7
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 1.1e-22 111.3 223 34.1
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.9e-22 110.5 231 35.1
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 1.9e-22 110.5 221 35.3
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 4.2e-22 109.4 223 35.9
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 4.2e-22 109.4 237 33.3
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 9.4e-22 108.2 220 37.3
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 9.4e-22 108.2 222 32.9
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 9.4e-22 108.2 220 34.5
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.2e-21 107.8 246 33.3
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.6e-21 107.5 222 32.9
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 3.6e-21 106.3 224 34.4
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 3.6e-21 106.3 231 34.2
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 4.6e-21 105.9 224 35.3
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 4.6e-21 105.9 224 34.8
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 4.6e-21 105.9 215 34.9
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 6.1e-21 105.5 221 33.5
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 6.1e-21 105.5 226 34.1
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 7.9e-21 105.1 224 34.8
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 7.9e-21 105.1 225 33.8
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 7.9e-21 105.1 224 34.8
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.0e-20 104.8 221 31.7
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 1.0e-20 104.8 227 33.0
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.4e-20 104.4 224 34.8
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 1.4e-20 104.4 223 35.0
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 1.4e-20 104.4 227 33.9
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.8e-20 104.0 238 33.6
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.8e-20 104.0 233 32.6
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 1.8e-20 104.0 231 34.6
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.8e-20 104.0 225 32.4
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.8e-20 104.0 221 32.6
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 1.8e-20 104.0 220 34.5
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 1.8e-20 104.0 223 32.7
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 1.8e-20 104.0 223 33.2
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.8e-20 104.0 221 33.9
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.8e-20 104.0 218 32.6
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.3e-20 103.6 221 33.5
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 2.3e-20 103.6 223 31.8
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 2.3e-20 103.6 223 31.8
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 3.0e-20 103.2 231 32.5
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 3.0e-20 103.2 223 32.7
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 3.0e-20 103.2 221 34.4
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 3.0e-20 103.2 217 32.7
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 3.0e-20 103.2 224 32.6
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 3.9e-20 102.8 213 34.7
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 3.9e-20 102.8 212 34.9
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 3.9e-20 102.8 215 34.4
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 3.9e-20 102.8 215 34.4
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 3.9e-20 102.8 218 33.9
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 5.1e-20 102.4 222 33.3
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 5.1e-20 102.4 224 34.4
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 5.1e-20 102.4 217 34.1
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 6.7e-20 102.1 226 33.2
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 6.7e-20 102.1 220 33.6
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 6.7e-20 102.1 226 33.2
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 6.7e-20 102.1 226 33.2
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 6.7e-20 102.1 231 32.9
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 6.7e-20 102.1 221 33.0
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 8.8e-20 101.7 223 31.8
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 8.8e-20 101.7 209 34.9
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 1.1e-19 101.3 221 33.0
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.1e-19 101.3 222 33.3
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.1e-19 101.3 229 33.6
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.1e-19 101.3 241 34.9
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 1.5e-19 100.9 220 33.2
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.5e-19 100.9 217 33.2
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.5e-19 100.9 221 32.6
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.5e-19 100.9 226 31.9
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 2.0e-19 100.5 220 33.2
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 2.0e-19 100.5 220 33.2
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 2.0e-19 100.5 220 34.1
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.0e-19 100.5 220 33.2
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.6e-19 100.1 226 32.7
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.6e-19 100.1 226 33.2
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.6e-19 100.1 219 32.0
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 3.3e-19 99.8 216 34.7
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 4.4e-19 99.4 210 33.3
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 5.7e-19 99.0 227 32.6
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 9.7e-19 98.2 224 34.4
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.3e-18 97.8 193 34.7
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 1.3e-18 97.8 218 32.6
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 1.7e-18 97.4 221 32.1
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.7e-18 97.4 227 32.2
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.7e-18 97.4 222 32.9
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.2e-18 97.1 225 32.0
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 2.8e-18 96.7 227 31.7
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.7e-18 96.3 203 33.5
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 4.8e-18 95.9 240 31.2
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 6.3e-18 95.5 217 32.7
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 8.2e-18 95.1 219 32.0
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.8e-17 94.0 197 33.5
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 3.1e-17 93.2 209 34.0
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 3.1e-17 93.2 200 34.5
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.1e-17 93.2 207 32.9
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 4.1e-17 92.8 219 30.6
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 6.9e-17 92.0 216 32.9
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 1.2e-16 91.3 187 34.2
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 1.2e-16 91.3 241 31.5
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.5e-16 90.9 223 30.0
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.5e-16 90.9 214 33.6
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 7.7e-16 88.6 216 31.5
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 1.7e-15 87.4 202 34.2
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 2.2e-15 87.0 219 32.0
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 2.2e-15 87.0 202 33.7
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 2.9e-15 86.7 200 34.0
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.5e-14 83.6 186 31.2
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.2e-14 83.2 200 30.0
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 5.5e-14 82.4 257 28.0
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 7.2e-14 82.0 220 30.9
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 9.4e-14 81.6 203 32.0
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 9.4e-14 81.6 178 33.1
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.6e-13 80.9 220 30.5
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 4.7e-13 79.3 215 30.7
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 4.7e-13 79.3 215 30.7
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.3e-12 77.0 208 30.3
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.0e-11 73.9 215 29.3
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 2.8e-10 70.1 196 31.1
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 6.3e-10 68.9 163 35.0
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 3.1e-09 66.6 161 31.7
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 4.1e-09 66.2 156 32.1
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 9.1e-09 65.1 192 29.2
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.6e-08 64.3 191 27.2
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 2.2e-07 60.5 91 38.5
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 5.0e-07 59.3 83 38.6
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 1.5e-06 57.8 122 32.8
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 1.9e-06 57.4 102 31.4
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 2.5e-06 57.0 96 34.4
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 4.2e-06 56.2 89 34.8
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 5.5e-06 55.8 83 37.3
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 7.2e-06 55.5 83 36.1
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 7.2e-06 55.5 83 36.1
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 7.2e-06 55.5 101 29.7


User provided reference genes

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