Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G415 Micromonas commoda HOM05D006451 ORTHO05D007680 1.8e-105 386.3 264 100.0
PRCOL_00000793 Prasinoderma coloniale HOM05D002462 ORTHO05D007680 1.9e-25 120.6 256 34.8
Pp3c21_15890 Physcomitrium patens HOM05D001310 ORTHO05D001283 1.5e-11 74.3 148 34.5
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 3.4e-11 73.2 132 36.4
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 3.4e-11 73.2 132 36.4
Pp3c7_6470 Physcomitrium patens HOM05D001310 ORTHO05D001283 1.7e-10 70.9 126 36.5
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 8.5e-10 68.6 131 34.4
CBR_g12383 Chara braunii HOM05D003946 ORTHO05D004485 1.4e-09 67.8 130 33.8
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 1.4e-09 67.8 130 34.6
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 1.4e-09 67.8 131 33.6
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 1.9e-09 67.4 132 34.1
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 1.9e-09 67.4 131 33.6
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 2.5e-09 67.0 132 34.8
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 3.2e-09 66.6 140 32.9
SalBow5G0105 Salvia bowleyana HOM05D001310 ORTHO05D001283 4.2e-09 66.2 137 34.3
Haze_26906 Corylus avellana HOM05D002462 ORTHO05D002893 5.5e-09 65.9 138 31.2
Pp3c22_12710 Physcomitrium patens HOM05D001916 ORTHO05D003272 5.5e-09 65.9 119 33.6
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 7.2e-09 65.5 132 31.8
Carub.0007s1011 Capsella rubella HOM05D003946 ORTHO05D004485 9.3e-09 65.1 140 32.1
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 9.3e-09 65.1 132 32.6
Gohir.A05G345884 Gossypium hirsutum HOM05D003946 ORTHO05D004485 1.2e-08 64.7 140 32.1
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 1.2e-08 64.7 132 31.8
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 1.2e-08 64.7 130 33.1
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 1.6e-08 64.3 132 32.6
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 1.6e-08 64.3 130 33.1
unitig_8.g3412 Utricularia gibba HOM05D001310 ORTHO05D001283 1.6e-08 64.3 144 33.3
Aa31LG2G20050 Aethionema arabicum HOM05D003946 ORTHO05D004485 2.1e-08 63.9 140 31.4
AL7G21660 Arabidopsis lyrata HOM05D003946 ORTHO05D004485 2.7e-08 63.5 140 30.7
TAR625G1091 Trochodendron aralioides HOM05D003946 ORTHO05D004485 2.7e-08 63.5 130 33.1
CDE10G0598 Ceratophyllum demersum HOM05D006451 ORTHO05D007680 3.6e-08 63.2 131 28.2
PRCOL_00006826 Prasinoderma coloniale HOM05D002462 ORTHO05D002893 4.6e-08 62.8 131 30.5
CiPaw.05G034800 Carya illinoinensis HOM05D001310 ORTHO05D001283 6.1e-08 62.4 133 31.6
DCAR_027237 Daucus carota HOM05D006451 ORTHO05D007680 6.1e-08 62.4 127 29.9
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 6.1e-08 62.4 140 29.3
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 6.1e-08 62.4 140 29.3
Sc18g0006830 Simmondsia chinensis HOM05D001310 ORTHO05D001283 6.1e-08 62.4 139 31.7
Gohir.D04G087100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 7.9e-08 62.0 140 32.1
Gorai.012G097100 Gossypium raimondii HOM05D003946 ORTHO05D004485 7.9e-08 62.0 140 32.1
Zm00001eb031280 Zea mays HOM05D006451 ORTHO05D007680 7.9e-08 62.0 134 29.9
Hund15772 Selenicereus undatus HOM05D005592 ORTHO05D006067 1.0e-07 61.6 117 34.2
CARHR238370 Cardamine hirsuta HOM05D003946 ORTHO05D004485 1.3e-07 61.2 135 30.4
CiPaw.01G196900 Carya illinoinensis HOM05D006451 ORTHO05D007680 1.3e-07 61.2 146 28.8
THA.LOC104826059 Tarenaya hassleriana HOM05D006451 ORTHO05D007680 1.3e-07 61.2 151 27.8
TWI59G1224 Tripterygium wilfordii HOM05D001310 ORTHO05D001283 1.3e-07 61.2 148 30.4
TAR636G0475 Trochodendron aralioides HOM05D003946 ORTHO05D004485 1.3e-07 61.2 130 33.1
Lj5A239G80 Lonicera japonica HOM05D001310 ORTHO05D001283 1.8e-07 60.8 133 30.8
Medtr8g107280 Medicago truncatula HOM05D001310 ORTHO05D001283 1.8e-07 60.8 147 29.9
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 1.8e-07 60.8 126 30.2
Manes.03G174100 Manihot esculenta HOM05D006451 ORTHO05D007680 2.3e-07 60.5 132 28.0
Phvul.002G330000 Phaseolus vulgaris HOM05D001310 ORTHO05D001283 2.3e-07 60.5 129 31.0
Sabra10G0060200 Salix brachista HOM05D006451 ORTHO05D007680 2.3e-07 60.5 151 28.5
CSS0020287 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 3.0e-07 60.1 140 31.4
Lj5C158T11 Lonicera japonica HOM05D001310 ORTHO05D001283 3.0e-07 60.1 141 30.5
PSO832G3676 Papaver somniferum HOM05D003946 ORTHO05D004485 3.0e-07 60.1 131 30.5
CDE10G0543 Ceratophyllum demersum HOM05D006451 ORTHO05D007680 3.9e-07 59.7 129 27.9
Migut.D01540 Erythranthe guttata HOM05D001310 ORTHO05D001283 3.9e-07 59.7 138 29.0
Manes.15G032000 Manihot esculenta HOM05D006451 ORTHO05D007680 3.9e-07 59.7 127 28.3
PSO210G1136 Papaver somniferum HOM05D003946 ORTHO05D004485 3.9e-07 59.7 140 30.7
Potri.010G082900 Populus trichocarpa HOM05D006451 ORTHO05D007680 3.9e-07 59.7 151 28.5
QL06p001354 Quercus lobata HOM05D006451 ORTHO05D007680 3.9e-07 59.7 127 28.3
Sabra08G0119100 Salix brachista HOM05D006451 ORTHO05D007680 3.9e-07 59.7 151 29.1
SEGI_22675 Sequoiadendron giganteum HOM05D001310 ORTHO05D001283 3.9e-07 59.7 136 30.1
EL10Ac3g06461 Beta vulgaris HOM05D006451 ORTHO05D007680 5.1e-07 59.3 145 26.9
CANSAT80G2848 Cannabis sativa HOM05D001310 ORTHO05D001283 5.1e-07 59.3 142 28.9
CSS0017975 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 6.7e-07 58.9 132 31.8
Lj4g0014215 Lotus japonicus HOM05D001310 ORTHO05D001283 6.7e-07 58.9 128 29.7
Nitab4.5_0000294g0010 Nicotiana tabacum HOM05D001310 ORTHO05D001283 6.7e-07 58.9 144 31.9
Zm00001eb255310 Zea mays HOM05D001310 ORTHO05D001283 6.7e-07 58.9 150 29.3
COL.COLO4_04375 Corchorus olitorius HOM05D001310 ORTHO05D001283 8.7e-07 58.5 129 30.2
Potri.008G156500 Populus trichocarpa HOM05D006451 ORTHO05D007680 8.7e-07 58.5 151 28.5
Ah.07g204140 Amaranthus hybridus HOM05D006451 ORTHO05D007680 1.1e-06 58.2 146 27.4
AUR62034703 Chenopodium quinoa HOM05D006451 ORTHO05D007680 1.1e-06 58.2 127 28.3
MD13G1198100 Malus domestica HOM05D006451 ORTHO05D007680 1.1e-06 58.2 131 28.2
VMungo0251G0933 Vigna mungo HOM05D001310 ORTHO05D001283 1.1e-06 58.2 126 30.2
Aa31LG3G17590 Aethionema arabicum HOM05D001310 ORTHO05D001283 1.5e-06 57.8 126 29.4
ATR0564G362 Amborella trichopoda HOM05D001310 ORTHO05D001283 1.5e-06 57.8 146 27.4
AUR62043956 Chenopodium quinoa HOM05D006451 ORTHO05D007680 1.5e-06 57.8 127 28.3
PSO782G1270 Papaver somniferum HOM05D003946 ORTHO05D004485 1.5e-06 57.8 131 29.8
CsaV3_2G013500 Cucumis sativus L. HOM05D006451 ORTHO05D007680 1.9e-06 57.4 127 27.6
Nitab4.5_0000085g0050 Nicotiana tabacum HOM05D006451 ORTHO05D007680 1.9e-06 57.4 127 29.1
Nitab4.5_0004556g0020 Nicotiana tabacum HOM05D001310 ORTHO05D001283 1.9e-06 57.4 126 30.2
Prupe.1G019800 Prunus persica HOM05D006451 ORTHO05D007680 1.9e-06 57.4 142 27.5
BcaB06g27947 Brassica carinata HOM05D003946 ORTHO05D004485 2.5e-06 57.0 131 29.8
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 2.5e-06 57.0 128 29.7
BraA08t35607Z Brassica rapa HOM05D006451 ORTHO05D007680 2.5e-06 57.0 128 29.7
CsaV3_7G006560 Cucumis sativus L. HOM05D001310 ORTHO05D001283 2.5e-06 57.0 139 31.7
Lj6g0024241 Lotus japonicus HOM05D001310 ORTHO05D001283 2.5e-06 57.0 126 31.0
Sc25g0004270 Simmondsia chinensis HOM05D006451 ORTHO05D007680 2.5e-06 57.0 127 27.6
SGA_v2.0_scaffold36G14382 Striga asiatica HOM05D001310 ORTHO05D001283 2.5e-06 57.0 143 29.4
A08p37070 Brassica napus HOM05D006451 ORTHO05D007680 3.3e-06 56.6 128 29.7
ClCG09G015490 Citrullus lanatus HOM05D001310 ORTHO05D001283 3.3e-06 56.6 147 30.6
Haze_11218 Corylus avellana HOM05D006451 ORTHO05D007680 3.3e-06 56.6 127 27.6
Duzib052G1229 Durio zibethinus HOM05D006451 ORTHO05D007680 3.3e-06 56.6 127 28.3
FAN12G3362 Fragaria x ananassa HOM05D006451 ORTHO05D007680 3.3e-06 56.6 145 26.2
Glyma.18G174600 Glycine max HOM05D003946 ORTHO05D004485 3.3e-06 56.6 128 31.2
HanXRQChr05g0142641 Helianthus annuus HOM05D001310 ORTHO05D001283 3.3e-06 56.6 148 29.1
RcHm_v2.0_Chr4g0387501 Rosa chinensis HOM05D006451 ORTHO05D007680 3.3e-06 56.6 126 27.8
Sed0028182 Sechium edule HOM05D001310 ORTHO05D001283 3.3e-06 56.6 139 31.7
TAR362G1293 Trochodendron aralioides HOM05D006451 ORTHO05D007680 3.3e-06 56.6 142 27.5
HPP92_001912 Vanilla planifolia HOM05D006451 ORTHO05D007680 3.3e-06 56.6 131 26.0
Aqoxy2G03443 Aquilegia oxysepala HOM05D006451 ORTHO05D007680 4.3e-06 56.2 127 28.3
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 4.3e-06 56.2 128 29.7
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 4.3e-06 56.2 128 29.7
CSS0014602 Camellia sinensis var. sinensis HOM05D006451 ORTHO05D007680 4.3e-06 56.2 127 28.3
CSS0023735 Camellia sinensis var. sinensis HOM05D006451 ORTHO05D007680 4.3e-06 56.2 127 28.3
CANSAT78G2142 Cannabis sativa HOM05D006451 ORTHO05D007680 4.3e-06 56.2 145 26.9
CDE04G0594 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 4.3e-06 56.2 134 30.6
Lj6A610G48 Lonicera japonica HOM05D006451 ORTHO05D007680 4.3e-06 56.2 126 27.8
Os12g0604800 Oryza sativa ssp. japonica HOM05D006451 ORTHO05D007680 4.3e-06 56.2 129 27.9
CAN.G1402.12 Capsicum annuum HOM05D006451 ORTHO05D007680 5.7e-06 55.8 126 27.8
Cc03_g04170 Coffea canephora HOM05D006451 ORTHO05D007680 5.7e-06 55.8 127 27.6
ECA248G0718 Erigeron canadensis HOM05D001369 ORTHO05D001235 5.7e-06 55.8 134 29.9
Gohir.A01G023900 Gossypium hirsutum HOM05D006451 ORTHO05D007680 5.7e-06 55.8 145 26.2
Gohir.D01G021900 Gossypium hirsutum HOM05D006451 ORTHO05D007680 5.7e-06 55.8 145 26.2
Gorai.002G024400 Gossypium raimondii HOM05D006451 ORTHO05D007680 5.7e-06 55.8 145 26.2
Hma1.2p1_0933F.1_g238380 Hydrangea macrophylla HOM05D006651 ORTHO05D008231 5.7e-06 55.8 116 29.3
MCO10G146 Micromonas commoda HOM05D000868 ORTHO05D000711 5.7e-06 55.8 263 25.9
Oeu058962.1 Olea europaea HOM05D006451 ORTHO05D007680 5.7e-06 55.8 131 27.5
SGA_v2.0_scaffold191G40453 Striga asiatica HOM05D006451 ORTHO05D007680 5.7e-06 55.8 126 27.8
EL10Ac5g11565 Beta vulgaris HOM05D001310 ORTHO05D001283 7.4e-06 55.5 126 28.6
CAN.G1.39 Capsicum annuum HOM05D001310 ORTHO05D001283 7.4e-06 55.5 126 30.2
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 7.4e-06 55.5 126 31.7
PSO063G3610 Papaver somniferum HOM05D003946 ORTHO05D004485 7.4e-06 55.5 131 28.2
Thecc.04G237100 Theobroma cacao HOM05D006451 ORTHO05D007680 7.4e-06 55.5 127 27.6
EL10Ac8g20143 Beta vulgaris HOM05D001369 ORTHO05D001235 9.7e-06 55.1 132 31.8
Migut.B00605 Erythranthe guttata HOM05D001310 ORTHO05D001283 9.7e-06 55.1 133 28.6
FvH4_4g00880 Fragaria vesca HOM05D006451 ORTHO05D007680 9.7e-06 55.1 127 26.8
MD06G1227100 Malus domestica HOM05D001310 ORTHO05D001283 9.7e-06 55.1 126 27.8
MD16G1198200 Malus domestica HOM05D006451 ORTHO05D007680 9.7e-06 55.1 147 25.9
Peaxi162Scf00683g00463 Petunia axillaris HOM05D001310 ORTHO05D001283 9.7e-06 55.1 126 28.6
PRCOL_00006159 Prasinoderma coloniale HOM05D006451 ORTHO05D007680 9.7e-06 55.1 144 29.9
SMO134G0039 Selaginella moellendorffii HOM05D005920 ORTHO05D007211 9.7e-06 55.1 147 31.3


User provided reference genes

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