Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G414 Micromonas commoda HOM05D002530 ORTHO05D002802 0.0e+00 1771.1 888 100.0
MCO14G044 Micromonas commoda HOM05D002530 ORTHO05D002802 0.0e+00 1578.1 880 88.5
MCO16G672 Micromonas commoda HOM05D002530 ORTHO05D002802 2.8e-235 819.3 831 53.7
Nitab4.5_0000064g0010 Nicotiana tabacum HOM05D002530 ORTHO05D002802 8.3e-17 93.6 517 24.6
PSO063G5596 Papaver somniferum HOM05D002530 ORTHO05D002802 1.4e-16 92.8 842 21.3
PSO782G3741 Papaver somniferum HOM05D002530 ORTHO05D002802 1.8e-16 92.4 807 20.9
Hma1.2p1_1156F.1_g262320 Hydrangea macrophylla HOM05D002530 ORTHO05D002802 4.1e-16 91.3 505 24.2
Peaxi162Scf00883g00321 Petunia axillaris HOM05D002530 ORTHO05D002802 5.3e-16 90.9 504 24.6
ClCG11G013480 Citrullus lanatus HOM05D002530 ORTHO05D002802 2.0e-15 89.0 533 23.3
CANSAT56G0720 Cannabis sativa HOM05D002530 ORTHO05D002802 2.7e-15 88.6 516 23.8
GSVIVG01038181001 Vitis vinifera HOM05D002530 ORTHO05D002802 2.7e-15 88.6 505 23.6
Haze_00855 Corylus avellana HOM05D002530 ORTHO05D002802 3.5e-15 88.2 371 25.3
Dinv33216 Davidia involucrata HOM05D002530 ORTHO05D002802 3.5e-15 88.2 516 24.0
TWI38G0533 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 5.9e-15 87.4 371 26.7
Mapoly0173s0003 Marchantia polymorpha HOM05D002530 ORTHO05D002802 7.7e-15 87.0 449 26.5
FAN17G1116 Fragaria x ananassa HOM05D002530 ORTHO05D002802 1.0e-14 86.7 518 23.6
CSS0004772 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 1.7e-14 85.9 383 25.6
CSS0008293 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 1.7e-14 85.9 383 25.6
Gorai.005G009000 Gossypium raimondii HOM05D002530 ORTHO05D002802 1.7e-14 85.9 371 27.0
Nitab4.5_0002913g0020 Nicotiana tabacum HOM05D002530 ORTHO05D002802 1.7e-14 85.9 382 25.9
MELO3C011849.2 Cucumis melo HOM05D002530 ORTHO05D002802 2.2e-14 85.5 516 23.8
CsaV3_5G030110 Cucumis sativus L. HOM05D002530 ORTHO05D002802 2.2e-14 85.5 516 23.8
Duzib268G0824 Durio zibethinus HOM05D002530 ORTHO05D002802 2.2e-14 85.5 371 25.9
Gohir.A02G007700 Gossypium hirsutum HOM05D002530 ORTHO05D002802 2.2e-14 85.5 371 27.0
Gohir.D02G007500 Gossypium hirsutum HOM05D002530 ORTHO05D002802 2.2e-14 85.5 371 27.0
Rhsim02G0085600 Rhododendron simsii HOM05D002530 ORTHO05D002802 2.2e-14 85.5 381 26.5
Zm00001eb146490 Zea mays HOM05D002530 ORTHO05D002802 2.2e-14 85.5 497 22.9
Psat3g000200 Pisum sativum HOM05D002530 ORTHO05D002802 2.9e-14 85.1 506 23.3
Ciclev10018782m.g Citrus clementina HOM05D002530 ORTHO05D002802 3.8e-14 84.7 373 25.2
Lj6A232T33 Lonicera japonica HOM05D002530 ORTHO05D002802 5.0e-14 84.3 500 23.6
Phvul.009G263100 Phaseolus vulgaris HOM05D002530 ORTHO05D002802 5.0e-14 84.3 371 25.9
Prupe.1G102500 Prunus persica HOM05D002530 ORTHO05D002802 5.0e-14 84.3 371 25.6
HPP92_001270 Vanilla planifolia HOM05D002530 ORTHO05D002802 5.0e-14 84.3 519 23.9
Cc03_g14450 Coffea canephora HOM05D002530 ORTHO05D002802 6.5e-14 84.0 382 25.1
FAN12G0122 Fragaria x ananassa HOM05D002530 ORTHO05D002802 8.5e-14 83.6 373 25.5
FAN12G0621 Fragaria x ananassa HOM05D002530 ORTHO05D002802 8.5e-14 83.6 373 25.5
PGR142G2077 Punica granatum HOM05D002530 ORTHO05D002802 8.5e-14 83.6 370 25.4
Actinidia11439 Actinidia chinensis HOM05D002530 ORTHO05D002802 1.1e-13 83.2 371 25.6
CAN.G196.3 Capsicum annuum HOM05D002530 ORTHO05D002802 1.1e-13 83.2 617 22.0
RhsimUnG0015100 Rhododendron simsii HOM05D002530 ORTHO05D002802 1.1e-13 83.2 374 25.9
Eucgr.H00287 Eucalyptus grandis HOM05D002530 ORTHO05D002802 1.5e-13 82.8 501 23.6
SEGI_10081 Sequoiadendron giganteum HOM05D002530 ORTHO05D002802 1.5e-13 82.8 482 23.9
Cpa.g.sc9.383 Carica papaya HOM05D002530 ORTHO05D002802 1.9e-13 82.4 361 25.5
DCAR_028970 Daucus carota HOM05D002530 ORTHO05D002802 1.9e-13 82.4 374 25.1
CSS0022709 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 2.5e-13 82.0 381 25.7
FvH4_4g10120 Fragaria vesca HOM05D002530 ORTHO05D002802 2.5e-13 82.0 373 25.2
MD00G1064100 Malus domestica HOM05D002530 ORTHO05D002802 2.5e-13 82.0 371 24.8
Solyc10g044900.3 Solanum lycopersicum HOM05D002530 ORTHO05D002802 2.5e-13 82.0 628 21.7
Sopen10g013890 Solanum pennellii HOM05D002530 ORTHO05D002802 2.5e-13 82.0 628 21.7
Thecc.04G163700 Theobroma cacao HOM05D002530 ORTHO05D002802 2.5e-13 82.0 371 25.3
arahy.Tifrunner.gnm1.ann1.PUPF9M Arachis hypogaea HOM05D002530 ORTHO05D002802 3.2e-13 81.6 371 25.3
arahy.Tifrunner.gnm1.ann1.XB6ANN Arachis hypogaea HOM05D002530 ORTHO05D002802 3.2e-13 81.6 371 25.3
Oeu024468.1 Olea europaea HOM05D002530 ORTHO05D002802 3.2e-13 81.6 371 26.1
RcHm_v2.0_Chr4g0405621 Rosa chinensis HOM05D002530 ORTHO05D002802 3.2e-13 81.6 373 24.9
HanXRQChr01g0023321 Helianthus annuus HOM05D002530 ORTHO05D002802 4.2e-13 81.3 373 25.2
Os03g0843600 Oryza sativa ssp. japonica HOM05D002530 ORTHO05D002802 4.2e-13 81.3 361 25.8
SalBow6G6351 Salvia bowleyana HOM05D002530 ORTHO05D002802 4.2e-13 81.3 380 25.3
HPP92_001253 Vanilla planifolia HOM05D002530 ORTHO05D002802 4.2e-13 81.3 519 23.7
VMungo1309G0412 Vigna mungo HOM05D002530 ORTHO05D002802 4.2e-13 81.3 371 25.6
ATR0743G261 Amborella trichopoda HOM05D002530 ORTHO05D002802 5.5e-13 80.9 380 25.0
Nitab4.5_0000667g0080 Nicotiana tabacum HOM05D002530 ORTHO05D002802 5.5e-13 80.9 634 21.9
Os01g0870100 Oryza sativa ssp. japonica HOM05D002530 ORTHO05D002802 5.5e-13 80.9 508 22.0
vmacro15696 Vaccinium macrocarpon HOM05D002530 ORTHO05D002802 5.5e-13 80.9 381 26.2
Lj6C228T6 Lonicera japonica HOM05D002530 ORTHO05D002802 7.2e-13 80.5 500 23.2
Zm00001eb210900 Zea mays HOM05D002530 ORTHO05D002802 7.2e-13 80.5 361 25.5
Lalb_Chr15g0076801 Lupinus albus HOM05D002530 ORTHO05D002802 9.4e-13 80.1 374 24.9
Sed0015965 Sechium edule HOM05D002530 ORTHO05D002802 9.4e-13 80.1 366 24.9
Atru.chr4.1470 Acer truncatum HOM05D002530 ORTHO05D002802 1.2e-12 79.7 371 25.9
Atru.chr4.1497 Acer truncatum HOM05D002530 ORTHO05D002802 1.2e-12 79.7 371 25.9
Migut.O00693 Erythranthe guttata HOM05D002530 ORTHO05D002802 1.2e-12 79.7 377 27.1
Nn5g27864 Nelumbo nucifera HOM05D002530 ORTHO05D002802 1.2e-12 79.7 579 21.4
PGSC0003DMG400008528 Solanum tuberosum HOM05D002530 ORTHO05D002802 1.2e-12 79.7 369 25.5
Migut.N03055 Erythranthe guttata HOM05D002530 ORTHO05D002802 2.1e-12 79.0 375 26.9
Medtr7g117580 Medicago truncatula HOM05D002530 ORTHO05D002802 2.1e-12 79.0 369 24.9
Sabra19G0108700 Salix brachista HOM05D002530 ORTHO05D002802 2.1e-12 79.0 361 25.8
HPP92_003582 Vanilla planifolia HOM05D002530 ORTHO05D002802 2.1e-12 79.0 504 23.6
CiPaw.01G169300 Carya illinoinensis HOM05D002530 ORTHO05D002802 2.7e-12 78.6 510 23.3
Glyma.19G263500 Glycine max HOM05D002530 ORTHO05D002802 3.6e-12 78.2 371 24.8
Manes.02G213500 Manihot esculenta HOM05D002530 ORTHO05D002802 3.6e-12 78.2 371 25.1
TAR633G2324 Trochodendron aralioides HOM05D002530 ORTHO05D002802 4.7e-12 77.8 370 24.1
Aqoxy5G00355 Aquilegia oxysepala HOM05D002530 ORTHO05D002802 6.1e-12 77.4 380 24.5
Potri.013G128100 Populus trichocarpa HOM05D002530 ORTHO05D002802 6.1e-12 77.4 361 25.8
Potri.019G097000 Populus trichocarpa HOM05D002530 ORTHO05D002802 6.1e-12 77.4 361 25.5
SMO347G0173 Selaginella moellendorffii HOM05D002530 ORTHO05D002802 8.0e-12 77.0 361 25.8
TAR628G1217 Trochodendron aralioides HOM05D002530 ORTHO05D002802 8.0e-12 77.0 649 22.0
ATR0584G164 Amborella trichopoda HOM05D002530 ORTHO05D002802 1.0e-11 76.6 665 21.5
CiPaw.05G005400 Carya illinoinensis HOM05D002530 ORTHO05D002802 1.0e-11 76.6 705 20.9
Dinv19402 Davidia involucrata HOM05D002530 ORTHO05D002802 1.0e-11 76.6 363 25.1
Lj5A262T66 Lonicera japonica HOM05D002530 ORTHO05D002802 1.0e-11 76.6 386 24.6
SMO351G0438 Selaginella moellendorffii HOM05D002530 ORTHO05D002802 1.0e-11 76.6 515 22.5
Gorai.005G265200 Gossypium raimondii HOM05D002530 ORTHO05D002802 1.4e-11 76.3 630 20.8
Peaxi162Scf00002g02318 Petunia axillaris HOM05D002530 ORTHO05D002802 1.4e-11 76.3 361 24.9
DCAR_006675 Daucus carota HOM05D002530 ORTHO05D002802 1.8e-11 75.9 429 25.4
Lalb_Chr18g0061051 Lupinus albus HOM05D002530 ORTHO05D002802 1.8e-11 75.9 614 21.7
RcHm_v2.0_Chr7g0220721 Rosa chinensis HOM05D002530 ORTHO05D002802 1.8e-11 75.9 372 24.5
ClCG11G013290 Citrullus lanatus HOM05D002530 ORTHO05D002802 2.3e-11 75.5 425 23.5
Prupe.1G577700 Prunus persica HOM05D002530 ORTHO05D002802 2.3e-11 75.5 385 24.4
Atru.chr6.793 Acer truncatum HOM05D002530 ORTHO05D002802 3.0e-11 75.1 350 25.1
BraA02t06341Z Brassica rapa HOM05D002530 ORTHO05D002802 3.0e-11 75.1 631 22.2
Sed0015896 Sechium edule HOM05D002530 ORTHO05D002802 3.0e-11 75.1 393 23.7
MSTRG.16493 Avicennia marina HOM05D002530 ORTHO05D002802 4.0e-11 74.7 346 24.0
MD08G1240900 Malus domestica HOM05D002530 ORTHO05D002802 4.0e-11 74.7 380 23.7
Nitab4.5_0002550g0020 Nicotiana tabacum HOM05D002530 ORTHO05D002802 4.0e-11 74.7 361 24.7
BcaC03g14657 Brassica carinata HOM05D002530 ORTHO05D002802 5.2e-11 74.3 631 22.0
C02p20900 Brassica napus HOM05D002530 ORTHO05D002802 5.2e-11 74.3 631 22.0
BolC2t08233H Brassica oleracea HOM05D002530 ORTHO05D002802 5.2e-11 74.3 631 22.0
Ciclev10000208m.g Citrus clementina HOM05D002530 ORTHO05D002802 5.2e-11 74.3 363 24.2
Lj1g0001992 Lotus japonicus HOM05D002530 ORTHO05D002802 5.2e-11 74.3 376 23.7
Psat1g222280 Pisum sativum HOM05D002530 ORTHO05D002802 5.2e-11 74.3 348 25.6
Sabra13G0107000 Salix brachista HOM05D002530 ORTHO05D002802 5.2e-11 74.3 361 24.7
HPP92_017233 Vanilla planifolia HOM05D002530 ORTHO05D002802 5.2e-11 74.3 372 23.9
FvH4_6g26000 Fragaria vesca HOM05D002530 ORTHO05D002802 6.8e-11 73.9 372 23.4
FAN02G4569 Fragaria x ananassa HOM05D002530 ORTHO05D002802 6.8e-11 73.9 372 23.4
HanXRQChr06g0181371 Helianthus annuus HOM05D002530 ORTHO05D002802 6.8e-11 73.9 374 23.8
Actinidia06474 Actinidia chinensis HOM05D002530 ORTHO05D002802 8.8e-11 73.6 361 24.7
A02p12850 Brassica napus HOM05D002530 ORTHO05D002802 8.8e-11 73.6 631 22.0
MELO3C011822.2 Cucumis melo HOM05D002530 ORTHO05D002802 8.8e-11 73.6 425 23.1
Lsat_1_v5_gn_7_76001 Lactuca sativa HOM05D002530 ORTHO05D002802 8.8e-11 73.6 386 24.4
QL02p100314 Quercus lobata HOM05D002530 ORTHO05D002802 8.8e-11 73.6 382 24.6
Sabra03G0004400 Salix brachista HOM05D002530 ORTHO05D002802 8.8e-11 73.6 363 24.8
CSS0005551 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 1.2e-10 73.2 382 23.8
CSS0048271 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 1.2e-10 73.2 382 23.8
CsaV3_5G029810 Cucumis sativus L. HOM05D002530 ORTHO05D002802 1.2e-10 73.2 425 23.1
PSO170G2866 Papaver somniferum HOM05D002530 ORTHO05D002802 1.2e-10 73.2 361 24.9
PGR142G2696 Punica granatum HOM05D002530 ORTHO05D002802 1.2e-10 73.2 374 24.1
EL10Ac6g14174 Beta vulgaris HOM05D002530 ORTHO05D002802 1.5e-10 72.8 350 25.4
Duzib132G0844 Durio zibethinus HOM05D002530 ORTHO05D002802 1.5e-10 72.8 348 25.3
CANSAT54G0268 Cannabis sativa HOM05D002530 ORTHO05D002802 2.0e-10 72.4 361 23.5
CBR_g39046 Chara braunii HOM05D002530 ORTHO05D002802 2.0e-10 72.4 458 22.5
Eucgr.I02760 Eucalyptus grandis HOM05D002530 ORTHO05D002802 2.0e-10 72.4 374 23.3
PSO407G0206 Papaver somniferum HOM05D002530 ORTHO05D002802 2.0e-10 72.4 282 27.3
Potri.003G008800 Populus trichocarpa HOM05D002530 ORTHO05D002802 2.0e-10 72.4 350 25.1
Thecc.02G019500 Theobroma cacao HOM05D002530 ORTHO05D002802 2.0e-10 72.4 361 25.2
AL8G23930 Arabidopsis lyrata HOM05D002530 ORTHO05D002802 2.6e-10 72.0 630 21.6
Manes.07G023400 Manihot esculenta HOM05D002530 ORTHO05D002802 2.6e-10 72.0 374 23.8
QL02p100278 Quercus lobata HOM05D002530 ORTHO05D002802 2.6e-10 72.0 382 23.8
SMO347G0514 Selaginella moellendorffii HOM05D002530 ORTHO05D002802 2.6e-10 72.0 503 19.9
PGSC0003DMG400015945 Solanum tuberosum HOM05D002530 ORTHO05D002802 2.6e-10 72.0 363 24.5
SGA_v2.0_scaffold304G47909 Striga asiatica HOM05D002530 ORTHO05D002802 2.6e-10 72.0 348 24.1
TWI23G0330 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 3.4e-10 71.6 373 24.1
arahy.Tifrunner.gnm1.ann1.8IGA7D Arachis hypogaea HOM05D002530 ORTHO05D002802 4.4e-10 71.2 346 25.1
arahy.Tifrunner.gnm1.ann1.ARQ4UL Arachis hypogaea HOM05D002530 ORTHO05D002802 4.4e-10 71.2 346 25.1
Cpa.g.sc113.52 Carica papaya HOM05D002530 ORTHO05D002802 4.4e-10 71.2 374 23.5
Cc02_g23070 Coffea canephora HOM05D002530 ORTHO05D002802 4.4e-10 71.2 372 23.9
COL.COLO4_17733 Corchorus olitorius HOM05D002530 ORTHO05D002802 4.4e-10 71.2 361 24.7
ECA236G1516 Erigeron canadensis HOM05D002530 ORTHO05D002802 4.4e-10 71.2 372 23.1
Migut.B00779 Erythranthe guttata HOM05D002530 ORTHO05D002802 4.4e-10 71.2 363 24.5
Medtr2g005870 Medicago truncatula HOM05D002530 ORTHO05D002802 4.4e-10 71.2 324 25.6
Gohir.A03G215200 Gossypium hirsutum HOM05D002530 ORTHO05D002802 5.7e-10 70.9 363 23.7
Gohir.D02G236700 Gossypium hirsutum HOM05D002530 ORTHO05D002802 5.7e-10 70.9 363 23.7
COL.COLO4_26748 Corchorus olitorius HOM05D002530 ORTHO05D002802 7.5e-10 70.5 348 25.6
BcaB05g24061 Brassica carinata HOM05D002530 ORTHO05D002802 9.8e-10 70.1 363 24.0
CARHR258750 Cardamine hirsuta HOM05D002530 ORTHO05D002802 9.8e-10 70.1 630 22.1
Glyma.12G167300 Glycine max HOM05D002530 ORTHO05D002802 9.8e-10 70.1 346 24.9
Glyma.16G003300 Glycine max HOM05D002530 ORTHO05D002802 9.8e-10 70.1 348 24.7
Phvul.006G218700 Phaseolus vulgaris HOM05D002530 ORTHO05D002802 9.8e-10 70.1 346 24.9
THA.LOC104805001 Tarenaya hassleriana HOM05D002530 ORTHO05D002802 9.8e-10 70.1 361 23.8
TWI14G0172 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 9.8e-10 70.1 361 25.5
VMungo0540G0429 Vigna mungo HOM05D002530 ORTHO05D002802 9.8e-10 70.1 346 24.9
GSVIVG01023259001 Vitis vinifera HOM05D002530 ORTHO05D002802 9.8e-10 70.1 363 24.5
Actinidia26167 Actinidia chinensis HOM05D002530 ORTHO05D002802 1.7e-09 69.3 348 24.7
Aqoxy6G00138 Aquilegia oxysepala HOM05D002530 ORTHO05D002802 2.2e-09 68.9 382 23.3
AagrBONN_evm.TU.Sc2ySwM_362.1183 Anthoceros agrestis HOM05D002530 ORTHO05D002802 2.8e-09 68.6 473 21.8
vmacro19867 Vaccinium macrocarpon HOM05D002530 ORTHO05D002802 3.7e-09 68.2 348 23.9
Potri.004G223400 Populus trichocarpa HOM05D002530 ORTHO05D002802 4.8e-09 67.8 363 24.0
SEGI_06022 Sequoiadendron giganteum HOM05D002530 ORTHO05D002802 6.3e-09 67.4 346 23.4
AT5G49960 Arabidopsis thaliana HOM05D002530 ORTHO05D002802 8.3e-09 67.0 363 24.5
Ca_00044_v3 Cicer arietinum L. HOM05D002530 ORTHO05D002802 8.3e-09 67.0 348 25.6
Haze_10049 Corylus avellana HOM05D002530 ORTHO05D002802 1.1e-08 66.6 418 24.2
Sc07g0004560 Simmondsia chinensis HOM05D002530 ORTHO05D002802 1.4e-08 66.2 354 24.9
Carub.0008s0986 Capsella rubella HOM05D002530 ORTHO05D002802 2.4e-08 65.5 363 24.2
Lj6g0022277 Lotus japonicus HOM05D002530 ORTHO05D002802 4.1e-08 64.7 361 24.9
Lsat_1_v5_gn_1_74180 Lactuca sativa HOM05D002530 ORTHO05D002802 5.4e-08 64.3 262 26.3
MBI07_g34961_MAGBIO Magnolia biondii HOM05D002530 ORTHO05D002802 5.4e-08 64.3 268 25.4
Oeu045925.1 Olea europaea HOM05D002530 ORTHO05D002802 5.4e-08 64.3 349 24.1
AagrBONN_evm.TU.Sc2ySwM_344.3976 Anthoceros agrestis HOM05D002530 ORTHO05D002802 1.2e-07 63.2 384 22.4
ECA248G1279 Erigeron canadensis HOM05D002530 ORTHO05D002802 4.5e-07 61.2 262 25.6
Rhsim05G0120400 Rhododendron simsii HOM05D002530 ORTHO05D002802 2.9e-06 58.5 384 22.1


User provided reference genes

Program Settings