Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 1.5e-262 909.1 490 100.0
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 2.2e-27 127.9 188 43.6
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 4.7e-22 110.2 195 35.4
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 8.0e-22 109.4 197 36.0
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 2.3e-21 107.8 197 35.5
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 2.3e-21 107.8 197 35.5
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 3.0e-21 107.5 197 35.5
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 8.9e-21 105.9 193 36.3
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 2.0e-20 104.8 193 36.3
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 3.4e-20 104.0 226 33.6
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 5.7e-20 103.2 204 34.8
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 1.3e-19 102.1 198 34.8
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 3.7e-19 100.5 193 35.8
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 3.7e-19 100.5 193 35.2
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.8e-18 98.2 203 35.0
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 1.8e-18 98.2 203 35.0
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 1.8e-18 98.2 194 35.1
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 2.4e-18 97.8 179 36.3
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 4.1e-18 97.1 202 35.6
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 4.1e-18 97.1 195 34.9
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 1.6e-17 95.1 201 33.3
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 1.6e-17 95.1 193 33.7
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 2.0e-17 94.7 179 36.3
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 2.0e-17 94.7 193 33.7
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 2.7e-17 94.4 191 34.6
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 3.5e-17 94.0 213 31.5
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 4.6e-17 93.6 187 35.3
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 5.9e-17 93.2 197 34.0
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 5.9e-17 93.2 180 35.0
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 7.8e-17 92.8 180 36.1
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 7.8e-17 92.8 239 32.2
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 1.0e-16 92.4 181 37.6
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 1.0e-16 92.4 194 33.5
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 1.3e-16 92.0 197 33.5
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 1.7e-16 91.7 203 34.5
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 2.3e-16 91.3 192 33.3
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 2.3e-16 91.3 182 35.7
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 3.0e-16 90.9 198 32.8
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 3.9e-16 90.5 185 34.6
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 3.9e-16 90.5 198 32.8
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 5.0e-16 90.1 191 34.6
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 5.0e-16 90.1 187 35.3
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 6.6e-16 89.7 181 35.4
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 6.6e-16 89.7 193 33.7
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 6.6e-16 89.7 177 33.9
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 8.6e-16 89.4 199 32.7
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 8.6e-16 89.4 172 33.7
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.5e-15 88.6 184 33.2
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 2.5e-15 87.8 187 34.2
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 2.5e-15 87.8 183 32.8
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 3.3e-15 87.4 205 33.7
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 3.3e-15 87.4 198 33.8
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 3.3e-15 87.4 190 35.3
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 4.3e-15 87.0 204 33.8
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 4.3e-15 87.0 204 33.8
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 9.5e-15 85.9 186 31.7
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 1.6e-14 85.1 183 35.0
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 1.6e-14 85.1 200 34.5
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 1.6e-14 85.1 176 33.5
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 1.6e-14 85.1 193 31.1
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 2.1e-14 84.7 183 33.9
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 2.1e-14 84.7 193 31.1
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 2.1e-14 84.7 187 32.6
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 2.1e-14 84.7 195 34.4
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 2.8e-14 84.3 197 32.0
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 2.8e-14 84.3 189 33.3
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 3.6e-14 84.0 201 33.3
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 3.6e-14 84.0 186 35.5
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 3.6e-14 84.0 184 34.8
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 4.7e-14 83.6 183 33.3
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 4.7e-14 83.6 197 33.5
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 6.2e-14 83.2 187 33.7
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 1.0e-13 82.4 210 29.0
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 1.0e-13 82.4 193 33.7
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 1.0e-13 82.4 180 33.9
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 1.0e-13 82.4 196 32.7
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.4e-13 82.0 193 32.1
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 1.4e-13 82.0 193 32.1
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.8e-13 81.6 196 33.7
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 2.3e-13 81.3 186 32.8
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 4.0e-13 80.5 197 32.0
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 5.2e-13 80.1 196 31.6
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 5.2e-13 80.1 191 30.9
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 5.2e-13 80.1 185 33.5
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 5.2e-13 80.1 200 32.5
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 6.8e-13 79.7 174 32.8
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 6.8e-13 79.7 209 33.0
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 6.8e-13 79.7 176 33.5
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 6.8e-13 79.7 180 33.9
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 8.9e-13 79.3 216 29.6
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 1.2e-12 79.0 189 32.3
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 1.5e-12 78.6 210 33.3
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 2.0e-12 78.2 208 33.2
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 2.0e-12 78.2 182 33.0
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 3.4e-12 77.4 184 32.6
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 5.8e-12 76.6 207 34.3
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 7.5e-12 76.3 164 32.9
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 9.8e-12 75.9 235 31.1
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 1.7e-11 75.1 220 30.9
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 2.4e-10 71.2 150 32.7
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 5.4e-10 70.1 212 29.2
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 7.0e-10 69.7 159 33.3
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 1.2e-09 68.9 238 27.7
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 4.6e-09 67.0 128 35.9
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 6.0e-09 66.6 258 26.7
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 1.3e-08 65.5 192 32.3
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 3.3e-07 60.8 164 29.9


User provided reference genes

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