Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G149 Micromonas commoda HOM05D004224 ORTHO05D016538 6.7e-257 890.2 454 100.0
MCO13G273 Micromonas commoda HOM05D004224 ORTHO05D016538 2.2e-26 124.4 484 30.4
Cre10.g429200 Chlamydomonas reinhardtii HOM05D005416 ORTHO05D016538 4.7e-24 116.7 476 27.1
MCO16G629 Micromonas commoda HOM05D005416 ORTHO05D016538 5.1e-23 113.2 470 27.2
PRCOL_00002309 Prasinoderma coloniale HOM05D040977 ORTHO05D016538 2.2e-18 97.8 457 27.8
MCO16G445 Micromonas commoda HOM05D005861 ORTHO05D007151 3.6e-16 90.5 441 27.0
AagrBONN_evm.TU.Sc2ySwM_228.1925 Anthoceros agrestis HOM05D004224 ORTHO05D016538 8.0e-16 89.4 272 26.8
Pp3c18_1260 Physcomitrium patens HOM05D004224 ORTHO05D016538 1.8e-15 88.2 298 26.5
Mapoly0012s0150 Marchantia polymorpha HOM05D004224 ORTHO05D016538 4.4e-14 83.6 281 26.3
Os02g0725200 Oryza sativa ssp. japonica HOM05D004224 ORTHO05D006437 4.1e-12 77.0 311 26.0
MCO16G254 Micromonas commoda HOM05D040977 ORTHO05D044152 7.0e-12 76.3 396 26.5
arahy.Tifrunner.gnm1.ann1.CZ6VEU Arachis hypogaea HOM05D004224 ORTHO05D006437 9.1e-12 75.9 308 26.6
SMO348G0083 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 9.1e-12 75.9 270 27.8
Eucgr.A01370 Eucalyptus grandis HOM05D004224 ORTHO05D006437 1.2e-11 75.5 285 24.9
arahy.Tifrunner.gnm1.ann1.ZYNV17 Arachis hypogaea HOM05D004224 ORTHO05D006437 1.6e-11 75.1 308 26.9
Sc21g0000480 Simmondsia chinensis HOM05D004224 ORTHO05D006437 2.6e-11 74.3 289 24.2
Thhalv10020552m.g Eutrema salsugineum HOM05D004224 ORTHO05D006437 3.5e-11 73.9 305 25.9
AUR62014995 Chenopodium quinoa HOM05D004224 ORTHO05D006437 4.5e-11 73.6 305 25.6
Nn5g27060 Nelumbo nucifera HOM05D005252 ORTHO05D006788 4.5e-11 73.6 259 24.7
Gohir.D07G171000 Gossypium hirsutum HOM05D004224 ORTHO05D006437 7.7e-11 72.8 279 28.0
Gorai.001G190900 Gossypium raimondii HOM05D004224 ORTHO05D006437 7.7e-11 72.8 279 28.0
QL04p067662 Quercus lobata HOM05D004224 ORTHO05D006437 2.2e-10 71.2 308 25.6
AL3G19030 Arabidopsis lyrata HOM05D004224 ORTHO05D006437 2.9e-10 70.9 305 25.6
Carub.0003s0725 Capsella rubella HOM05D004224 ORTHO05D006437 2.9e-10 70.9 305 25.6
Hma1.2p1_0629F.1_g192230 Hydrangea macrophylla HOM05D004224 ORTHO05D006437 2.9e-10 70.9 308 26.0
COL.COLO4_19641 Corchorus olitorius HOM05D004224 ORTHO05D006437 3.8e-10 70.5 279 27.2
GSVIVG01035253001 Vitis vinifera HOM05D005252 ORTHO05D006788 3.8e-10 70.5 284 24.3
MELO3C024188.2 Cucumis melo HOM05D004224 ORTHO05D006437 5.0e-10 70.1 308 25.6
PRCOL_00006542 Prasinoderma coloniale HOM05D005416 ORTHO05D007956 5.0e-10 70.1 289 28.0
CsaV3_7G002430 Cucumis sativus L. HOM05D004224 ORTHO05D006437 8.5e-10 69.3 308 25.6
MBI15_g41427_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 8.5e-10 69.3 334 24.6
Sed0013057 Sechium edule HOM05D004224 ORTHO05D006437 8.5e-10 69.3 308 25.3
Migut.M00055 Erythranthe guttata HOM05D004224 ORTHO05D006437 1.1e-09 68.9 293 26.6
Aqoxy7G02030 Aquilegia oxysepala HOM05D004224 ORTHO05D006437 1.5e-09 68.6 304 26.3
Cpa.g.sc136.38 Carica papaya HOM05D004224 ORTHO05D006437 1.5e-09 68.6 279 27.6
CiPaw.03G282900 Carya illinoinensis HOM05D004224 ORTHO05D006437 1.5e-09 68.6 282 25.9
vmacro12069 Vaccinium macrocarpon HOM05D004224 ORTHO05D006437 1.5e-09 68.6 308 26.3
AT3G07670 Arabidopsis thaliana HOM05D004224 ORTHO05D006437 1.9e-09 68.2 305 25.2
Pp3c4_19510 Physcomitrium patens HOM05D004224 ORTHO05D006437 1.9e-09 68.2 278 25.9
PGR031G1258 Punica granatum HOM05D004224 ORTHO05D006437 1.9e-09 68.2 306 25.5
Haze_12602 Corylus avellana HOM05D004224 ORTHO05D006437 2.5e-09 67.8 308 26.0
Haze_12613 Corylus avellana HOM05D004224 ORTHO05D006437 2.5e-09 67.8 308 26.0
FAN23G2791 Fragaria x ananassa HOM05D007044 ORTHO05D008981 2.5e-09 67.8 280 23.9
CDE05G3447 Ceratophyllum demersum HOM05D004224 ORTHO05D006437 3.2e-09 67.4 321 22.7
Sp3g06610 Schrenkiella parvula HOM05D004224 ORTHO05D006437 3.2e-09 67.4 305 24.9
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 3.2e-09 67.4 307 26.1
BcaB04g21275 Brassica carinata HOM05D004224 ORTHO05D006437 4.2e-09 67.0 305 24.9
Cc07_g12720 Coffea canephora HOM05D005252 ORTHO05D006788 4.2e-09 67.0 276 25.0
Manes.13G060800 Manihot esculenta HOM05D004224 ORTHO05D006437 4.2e-09 67.0 279 26.9
Nitab4.5_0000483g0240 Nicotiana tabacum HOM05D005252 ORTHO05D006788 4.2e-09 67.0 286 25.2
TWI75G0912 Tripterygium wilfordii HOM05D004224 ORTHO05D006437 4.2e-09 67.0 308 26.0
BolC1t05538H Brassica oleracea HOM05D004224 ORTHO05D006437 5.5e-09 66.6 305 24.9
Dinv21312 Davidia involucrata HOM05D004224 ORTHO05D006437 5.5e-09 66.6 282 25.9
Os09g0411650 Oryza sativa ssp. japonica HOM05D005456 ORTHO05D006805 5.5e-09 66.6 287 22.3
Thecc.01G198200 Theobroma cacao HOM05D004224 ORTHO05D006437 5.5e-09 66.6 306 25.5
TAR629G0565 Trochodendron aralioides HOM05D004224 ORTHO05D006437 5.5e-09 66.6 326 25.5
HPP92_025609 Vanilla planifolia HOM05D005252 ORTHO05D006788 5.5e-09 66.6 264 24.6
CSS0035947 Camellia sinensis var. sinensis HOM05D004224 ORTHO05D006437 9.4e-09 65.9 308 25.6
Cfa014211 Carpinus fangiana HOM05D004224 ORTHO05D006437 9.4e-09 65.9 308 25.6
Glyma.13G010500 Glycine max HOM05D004224 ORTHO05D006437 9.4e-09 65.9 312 24.4
Medtr3g082690 Medicago truncatula HOM05D004224 ORTHO05D006437 9.4e-09 65.9 307 23.5
AL5G36200 Arabidopsis lyrata HOM05D005234 ORTHO05D006583 1.2e-08 65.5 277 23.1
MSTRG.14913 Avicennia marina HOM05D004224 ORTHO05D006437 1.2e-08 65.5 308 26.0
Ca_16340_v3 Cicer arietinum L. HOM05D004224 ORTHO05D006437 1.2e-08 65.5 280 24.3
Lj1A799T35 Lonicera japonica HOM05D004224 ORTHO05D006437 1.2e-08 65.5 281 25.6
Potri.014G169300 Populus trichocarpa HOM05D004224 ORTHO05D006437 1.2e-08 65.5 282 24.8
Ciclev10014974m.g Citrus clementina HOM05D004224 ORTHO05D006437 1.6e-08 65.1 309 25.6
SGA_v2.0_scaffold193G40685 Striga asiatica HOM05D005234 ORTHO05D006583 1.6e-08 65.1 297 25.3
SGA_v2.0_scaffold73G24493 Striga asiatica HOM05D004224 ORTHO05D006437 1.6e-08 65.1 287 24.0
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 2.1e-08 64.7 275 24.4
Dinv19082 Davidia involucrata HOM05D000783 ORTHO05D000705 2.1e-08 64.7 288 23.3
SGA_v2.0_scaffold115G32046 Striga asiatica HOM05D005252 ORTHO05D006788 2.1e-08 64.7 285 22.8
Aa31LG5G18250 Aethionema arabicum HOM05D004224 ORTHO05D006437 2.7e-08 64.3 305 24.6
FAN26G2478 Fragaria x ananassa HOM05D007044 ORTHO05D008981 2.7e-08 64.3 290 24.5
PSO541G4615 Papaver somniferum HOM05D004224 ORTHO05D006437 2.7e-08 64.3 306 23.9
Phvul.006G005700 Phaseolus vulgaris HOM05D004224 ORTHO05D006437 2.7e-08 64.3 309 22.7
THA.LOC104809996 Tarenaya hassleriana HOM05D005234 ORTHO05D006583 2.7e-08 64.3 272 23.5
Actinidia09800 Actinidia chinensis HOM05D004224 ORTHO05D006437 3.6e-08 63.9 326 24.8
FvH4_1g27420 Fragaria vesca HOM05D005252 ORTHO05D006788 3.6e-08 63.9 307 25.1
FAN19G2162 Fragaria x ananassa HOM05D005252 ORTHO05D006788 3.6e-08 63.9 307 25.1
Lj2C511T2 Lonicera japonica HOM05D005252 ORTHO05D006788 3.6e-08 63.9 281 25.3
SMO367G0389 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 3.6e-08 63.9 314 24.2
ATR0751G026 Amborella trichopoda HOM05D004224 ORTHO05D006437 4.7e-08 63.5 314 23.9
ATR0807G108 Amborella trichopoda HOM05D005252 ORTHO05D006788 4.7e-08 63.5 248 25.0
Migut.K00975 Erythranthe guttata HOM05D005252 ORTHO05D006788 4.7e-08 63.5 276 25.0
Thhalv10010346m.g Eutrema salsugineum HOM05D005234 ORTHO05D006583 4.7e-08 63.5 294 24.8
Lsat_1_v5_gn_7_97380 Lactuca sativa HOM05D004224 ORTHO05D006437 4.7e-08 63.5 281 23.8
Nn1g07539 Nelumbo nucifera HOM05D004224 ORTHO05D006437 4.7e-08 63.5 336 24.1
Sabra14G0129100 Salix brachista HOM05D004224 ORTHO05D006437 4.7e-08 63.5 293 25.6
Sp5g07340 Schrenkiella parvula HOM05D005234 ORTHO05D006583 4.7e-08 63.5 295 25.1
SMO169G0173 Selaginella moellendorffii HOM05D007044 ORTHO05D008981 4.7e-08 63.5 292 26.4
AT3G55080 Arabidopsis thaliana HOM05D005234 ORTHO05D006583 6.1e-08 63.2 305 23.9
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 6.1e-08 63.2 289 23.2
DCAR_003403 Daucus carota HOM05D005252 ORTHO05D006788 6.1e-08 63.2 299 22.4
ECA236G4771 Erigeron canadensis HOM05D004224 ORTHO05D006437 6.1e-08 63.2 277 24.2
Lalb_Chr04g0251511 Lupinus albus HOM05D005252 ORTHO05D006788 6.1e-08 63.2 288 24.3
MBI15_g45882_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 6.1e-08 63.2 331 23.6
SMO244G0074 Selaginella moellendorffii HOM05D005252 ORTHO05D006788 6.1e-08 63.2 287 23.0
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 8.0e-08 62.8 293 25.6
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 8.0e-08 62.8 287 23.3
FAN28G2525 Fragaria x ananassa HOM05D005252 ORTHO05D006788 8.0e-08 62.8 306 24.2
Hma1.2p1_0158F.1_g069575 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 8.0e-08 62.8 301 22.6
Oeu040454.1 Olea europaea HOM05D004224 ORTHO05D006437 8.0e-08 62.8 308 25.3
Peaxi162Scf00612g00137 Petunia axillaris HOM05D004224 ORTHO05D006437 8.0e-08 62.8 309 23.9
Pp3c3_27330 Physcomitrium patens HOM05D005234 ORTHO05D006583 8.0e-08 62.8 293 24.2
ClCG09G020200 Citrullus lanatus HOM05D005234 ORTHO05D006583 1.0e-07 62.4 259 27.0
DCAR_019670 Daucus carota HOM05D004224 ORTHO05D006437 1.0e-07 62.4 309 23.9
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 1.0e-07 62.4 290 23.8
SEGI_13327 Sequoiadendron giganteum HOM05D004224 ORTHO05D006437 1.0e-07 62.4 258 25.2
TAR622G0726 Trochodendron aralioides HOM05D005252 ORTHO05D006788 1.0e-07 62.4 292 22.6
arahy.Tifrunner.gnm1.ann1.Y82BEI Arachis hypogaea HOM05D005252 ORTHO05D006788 1.4e-07 62.0 302 22.5
MD17G1287300 Malus domestica HOM05D005252 ORTHO05D006788 1.4e-07 62.0 308 23.4
MCO12G473 Micromonas commoda HOM05D005456 ORTHO05D006805 1.4e-07 62.0 283 24.7
PSO675G8516 Papaver somniferum HOM05D004224 ORTHO05D006437 1.4e-07 62.0 306 23.9
RcHm_v2.0_Chr2g0155741 Rosa chinensis HOM05D004224 ORTHO05D006437 1.4e-07 62.0 308 25.0
Lj6g0004652 Lotus japonicus HOM05D004224 ORTHO05D006437 1.8e-07 61.6 277 21.3
Medtr5g076640 Medicago truncatula HOM05D005252 ORTHO05D006788 1.8e-07 61.6 329 21.9
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 2.3e-07 61.2 263 22.8
CSS0014125 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 2.3e-07 61.2 293 24.9
Cfa007750 Carpinus fangiana HOM05D005252 ORTHO05D006788 2.3e-07 61.2 311 22.2
Lsat_1_v5_gn_2_71861 Lactuca sativa HOM05D005252 ORTHO05D006788 2.3e-07 61.2 284 21.8
Sopen02g025950 Solanum pennellii HOM05D005252 ORTHO05D006788 2.3e-07 61.2 279 22.2
BcaB01g00128 Brassica carinata HOM05D005234 ORTHO05D006583 3.0e-07 60.8 274 25.9
A02p04080 Brassica napus HOM05D005252 ORTHO05D006788 3.0e-07 60.8 264 22.3
BraA02t05370Z Brassica rapa HOM05D005252 ORTHO05D006788 3.0e-07 60.8 264 22.3
LjContig00141g0010829 Lotus japonicus HOM05D005252 ORTHO05D006788 3.0e-07 60.8 338 22.2
Psat5g104720 Pisum sativum HOM05D004224 ORTHO05D006437 3.0e-07 60.8 308 22.4
PRCOL_00001449 Prasinoderma coloniale HOM05D004224 ORTHO05D006437 3.0e-07 60.8 291 24.7
TWI74G0077 Tripterygium wilfordii HOM05D005252 ORTHO05D006788 3.0e-07 60.8 326 23.6
arahy.Tifrunner.gnm1.ann1.UX6KKC Arachis hypogaea HOM05D005252 ORTHO05D006788 4.0e-07 60.5 304 22.0
CANSAT64G1501 Cannabis sativa HOM05D004224 ORTHO05D006437 4.0e-07 60.5 308 23.4
Carub.0005s2171 Capsella rubella HOM05D005234 ORTHO05D006583 4.0e-07 60.5 278 24.1
Eucgr.J01148 Eucalyptus grandis HOM05D005234 ORTHO05D006583 4.0e-07 60.5 269 23.8
FAN28G2815 Fragaria x ananassa HOM05D005252 ORTHO05D006788 4.0e-07 60.5 306 23.9
Psat2g042800 Pisum sativum HOM05D005252 ORTHO05D006788 4.0e-07 60.5 323 22.3
Solyc02g081320.4 Solanum lycopersicum HOM05D005252 ORTHO05D006788 4.0e-07 60.5 279 22.2
PGSC0003DMG400016732 Solanum tuberosum HOM05D005252 ORTHO05D006788 4.0e-07 60.5 270 24.4
BcaNung00410 Brassica carinata HOM05D005252 ORTHO05D006788 5.2e-07 60.1 281 22.1
Ca_05755_v3 Cicer arietinum L. HOM05D005252 ORTHO05D006788 5.2e-07 60.1 318 23.9
HanXRQChr11g0329421 Helianthus annuus HOM05D004224 ORTHO05D006437 5.2e-07 60.1 301 22.6
Potri.004G081400 Populus trichocarpa HOM05D005252 ORTHO05D006788 5.2e-07 60.1 268 22.4
Rhsim08G0021900 Rhododendron simsii HOM05D005252 ORTHO05D006788 5.2e-07 60.1 281 24.6
EL10Ac2g03507 Beta vulgaris HOM05D005234 ORTHO05D006583 6.8e-07 59.7 308 24.0
Cpa.g.sc178.38 Carica papaya HOM05D005252 ORTHO05D006788 6.8e-07 59.7 280 25.4
Zm00001eb312420 Zea mays HOM05D005456 ORTHO05D006805 6.8e-07 59.7 342 22.2
Zm00001eb320090 Zea mays HOM05D005252 ORTHO05D006788 6.8e-07 59.7 263 26.2
RcHm_v2.0_Chr3g0488621 Rosa chinensis HOM05D005252 ORTHO05D006788 8.8e-07 59.3 290 23.8
FvH4_6g40490 Fragaria vesca HOM05D004224 ORTHO05D006437 1.2e-06 58.9 308 24.4
FAN05G1563 Fragaria x ananassa HOM05D004224 ORTHO05D006437 1.2e-06 58.9 308 24.4
FAN10G1506 Fragaria x ananassa HOM05D004224 ORTHO05D006437 1.2e-06 58.9 308 24.4
FAN14G2615 Fragaria x ananassa HOM05D004224 ORTHO05D006437 1.2e-06 58.9 308 24.4
Nn2g10556 Nelumbo nucifera HOM05D005234 ORTHO05D006583 1.2e-06 58.9 284 24.6
PGR004G2027 Punica granatum HOM05D005252 ORTHO05D006788 1.2e-06 58.9 284 24.6
Sed0019162 Sechium edule HOM05D005234 ORTHO05D006583 1.2e-06 58.9 263 26.2
VMungo0720G1519 Vigna mungo HOM05D005234 ORTHO05D006583 1.2e-06 58.9 286 22.7
Cre12.g541777 Chlamydomonas reinhardtii HOM05D005416 ORTHO05D007956 1.5e-06 58.5 318 24.2
arahy.Tifrunner.gnm1.ann1.2Q625H Arachis hypogaea HOM05D005252 ORTHO05D006788 2.6e-06 57.8 313 21.4
COL.COLO4_20051 Corchorus olitorius HOM05D005252 ORTHO05D006788 2.6e-06 57.8 284 22.2
FvH4_1g25860 Fragaria vesca HOM05D007044 ORTHO05D008981 2.6e-06 57.8 211 28.0
FAN19G0897 Fragaria x ananassa HOM05D007044 ORTHO05D008981 2.6e-06 57.8 209 25.8
Potri.008G047400 Populus trichocarpa HOM05D005234 ORTHO05D006583 2.6e-06 57.8 276 24.3
SMO180G0001 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 2.6e-06 57.8 319 22.3
TPR.G5289 Trifolium pratense HOM05D005252 ORTHO05D006788 2.6e-06 57.8 302 22.2
Glyma.10G292500 Glycine max HOM05D005234 ORTHO05D006583 4.4e-06 57.0 272 22.8
Mapoly0068s0008 Marchantia polymorpha HOM05D005234 ORTHO05D006583 4.4e-06 57.0 291 23.4
Phvul.007G007800 Phaseolus vulgaris HOM05D005234 ORTHO05D006583 4.4e-06 57.0 289 22.5
PRCOL_00002347 Prasinoderma coloniale HOM05D005416 ORTHO05D020352 4.4e-06 57.0 384 27.1
Cfa001561 Carpinus fangiana HOM05D005234 ORTHO05D006583 5.7e-06 56.6 279 24.4
Migut.A00396 Erythranthe guttata HOM05D005234 ORTHO05D006583 7.5e-06 56.2 303 23.8
EL10Ac4g08917 Beta vulgaris HOM05D005252 ORTHO05D006788 9.7e-06 55.8 313 23.6
Lalb_Chr06g0164091 Lupinus albus HOM05D005234 ORTHO05D006583 9.7e-06 55.8 280 22.5
Os07g0471100 Oryza sativa ssp. japonica HOM05D005252 ORTHO05D006788 9.7e-06 55.8 269 26.0
RcHm_v2.0_Chr1g0364981 Rosa chinensis HOM05D005234 ORTHO05D006583 9.7e-06 55.8 283 24.4
SalBow5G4252 Salvia bowleyana HOM05D005252 ORTHO05D006788 9.7e-06 55.8 270 23.0


User provided reference genes

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