Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 8.5e-117 423.7 217 100.0
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.1e-58 230.7 179 67.6
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.4e-58 229.6 181 68.0
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.1e-58 229.2 180 66.1
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.1e-58 229.2 180 66.1
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 4.0e-58 228.8 197 61.9
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 5.2e-58 228.4 176 65.3
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 6.9e-58 228.0 200 62.0
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 8.9e-58 227.6 174 67.2
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 8.9e-58 227.6 191 64.4
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 8.9e-58 227.6 198 62.1
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 1.5e-57 226.9 168 69.6
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 1.5e-57 226.9 168 69.6
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 1.5e-57 226.9 168 69.6
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 1.5e-57 226.9 168 69.6
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.5e-57 226.9 191 64.9
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.5e-57 226.9 177 66.7
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 2.0e-57 226.5 185 66.5
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 2.0e-57 226.5 171 67.3
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 2.6e-57 226.1 159 72.3
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.6e-57 226.1 177 66.7
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 2.6e-57 226.1 197 62.9
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 2.6e-57 226.1 160 70.6
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 3.4e-57 225.7 175 66.3
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 3.4e-57 225.7 154 72.7
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 3.4e-57 225.7 163 71.8
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 3.4e-57 225.7 186 64.0
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 3.4e-57 225.7 157 72.0
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 3.4e-57 225.7 157 72.0
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 4.4e-57 225.3 175 65.1
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 5.8e-57 224.9 204 59.3
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 5.8e-57 224.9 192 62.5
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 5.8e-57 224.9 178 65.7
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 7.6e-57 224.6 196 62.8
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 7.6e-57 224.6 174 68.4
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 7.6e-57 224.6 165 69.1
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 9.9e-57 224.2 168 68.5
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 9.9e-57 224.2 201 59.7
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 9.9e-57 224.2 205 61.5
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 9.9e-57 224.2 179 65.4
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 9.9e-57 224.2 165 67.9
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.3e-56 223.8 176 66.5
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 1.3e-56 223.8 174 65.5
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 1.3e-56 223.8 174 66.1
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.3e-56 223.8 175 64.6
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.3e-56 223.8 174 66.1
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.3e-56 223.8 175 64.6
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 1.3e-56 223.8 193 61.7
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.7e-56 223.4 204 61.8
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 1.7e-56 223.4 204 58.8
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.2e-56 223.0 170 68.2
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 2.2e-56 223.0 157 72.0
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 2.2e-56 223.0 171 68.4
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 2.2e-56 223.0 179 65.9
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.9e-56 222.6 164 68.3
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 2.9e-56 222.6 180 64.4
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 2.9e-56 222.6 172 65.7
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 2.9e-56 222.6 196 59.7
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 2.9e-56 222.6 157 70.7
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 3.8e-56 222.2 192 63.0
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 3.8e-56 222.2 179 65.9
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 3.8e-56 222.2 141 75.9
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 3.8e-56 222.2 196 62.2
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 3.8e-56 222.2 203 59.6
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.9e-56 221.9 141 75.2
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.9e-56 221.9 158 70.3
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.9e-56 221.9 195 63.1
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.9e-56 221.9 191 61.8
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 6.4e-56 221.5 171 66.7
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 6.4e-56 221.5 176 65.9
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.4e-56 221.1 175 65.1
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.4e-56 221.1 147 72.8
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 8.4e-56 221.1 195 61.0
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 8.4e-56 221.1 163 69.3
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 1.1e-55 220.7 204 61.8
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-55 220.7 175 64.0
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.1e-55 220.7 147 72.1
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.1e-55 220.7 197 58.9
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.1e-55 220.7 187 63.1
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 1.1e-55 220.7 202 60.4
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 1.4e-55 220.3 175 66.3
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.4e-55 220.3 200 59.0
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 1.4e-55 220.3 201 58.7
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 1.4e-55 220.3 204 59.3
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.4e-55 220.3 198 59.1
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 1.4e-55 220.3 175 65.1
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 1.4e-55 220.3 176 65.9
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.4e-55 220.3 186 62.9
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 1.9e-55 219.9 206 60.2
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.9e-55 219.9 198 60.1
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.9e-55 219.9 175 66.3
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 1.9e-55 219.9 174 66.1
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.9e-55 219.9 143 74.1
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.9e-55 219.9 141 75.9
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 2.4e-55 219.5 204 60.3
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 2.4e-55 219.5 194 61.3
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 2.4e-55 219.5 169 66.9
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 2.4e-55 219.5 159 69.8
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 2.4e-55 219.5 162 70.4
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 2.4e-55 219.5 172 64.5
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 2.4e-55 219.5 203 58.6
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.2e-55 219.2 207 61.4
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 4.2e-55 218.8 165 67.3
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 4.2e-55 218.8 175 64.6
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 4.2e-55 218.8 200 59.0
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 4.2e-55 218.8 159 68.6
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 4.2e-55 218.8 158 71.5
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 4.2e-55 218.8 174 64.4
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 4.2e-55 218.8 184 63.6
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 5.4e-55 218.4 175 66.3
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 5.4e-55 218.4 179 64.2
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 7.1e-55 218.0 147 72.8
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 7.1e-55 218.0 193 63.2
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 7.1e-55 218.0 198 62.6
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 7.1e-55 218.0 182 63.2
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 7.1e-55 218.0 172 65.7
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 7.1e-55 218.0 178 63.5
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 7.1e-55 218.0 177 64.4
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 9.3e-55 217.6 199 59.8
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 9.3e-55 217.6 196 60.2
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 1.2e-54 217.2 179 64.2
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.6e-54 216.9 162 67.9
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 2.1e-54 216.5 202 58.9
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.1e-54 216.5 171 65.5
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.1e-54 216.5 171 65.5
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.7e-54 216.1 194 61.3
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 2.7e-54 216.1 204 57.8
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 3.5e-54 215.7 179 65.9
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 3.5e-54 215.7 181 63.5
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.3e-53 213.8 171 64.9
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.7e-53 213.4 197 60.4
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 1.7e-53 213.4 176 63.1
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 3.0e-53 212.6 192 60.9
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.0e-53 212.6 171 64.3
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.0e-53 212.6 193 60.6
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 1.5e-52 210.3 188 60.1
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.3e-52 209.1 199 61.3
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.1e-50 202.6 151 68.9
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 7.6e-49 198.0 182 59.3
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.2e-48 196.4 195 57.9
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.2e-48 196.4 195 57.9
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 8.4e-48 194.5 128 73.4
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 2.4e-47 193.0 197 56.3
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 3.9e-45 185.7 161 63.4
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 3.4e-41 172.6 173 53.8
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 5.8e-41 171.8 184 53.3
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 6.5e-32 141.7 203 45.8
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 2.4e-26 123.2 91 67.0
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 4.5e-25 119.0 171 46.2
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 2.9e-24 116.3 70 80.0
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 3.2e-23 112.8 164 43.9
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 1.4e-10 70.9 39 79.5
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 5.3e-10 68.9 63 55.6
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 1.2e-09 67.8 79 48.1
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 2.5e-07 60.1 79 45.6


User provided reference genes

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