Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO12G491 Micromonas commoda HOM05D002719 ORTHO05D002938 0.0e+00 1478.8 808 100.0
Carub.0002s2050 Capsella rubella HOM05D002719 ORTHO05D002938 5.7e-17 94.0 591 21.3
Eucgr.B00830 Eucalyptus grandis HOM05D002719 ORTHO05D002938 7.5e-17 93.6 610 22.1
CARHR066820 Cardamine hirsuta HOM05D002719 ORTHO05D002938 9.8e-17 93.2 592 21.5
A07p39610 Brassica napus HOM05D002719 ORTHO05D002938 4.9e-16 90.9 597 22.3
QL10p026767 Quercus lobata HOM05D002719 ORTHO05D002938 8.3e-16 90.1 636 20.9
Cc04_g06830 Coffea canephora HOM05D002719 ORTHO05D002938 3.2e-15 88.2 616 21.4
Solyc03g118850.4 Solanum lycopersicum HOM05D002719 ORTHO05D002938 3.2e-15 88.2 615 21.3
AL2G33560 Arabidopsis lyrata HOM05D002719 ORTHO05D002938 7.0e-15 87.0 621 20.3
PGSC0003DMG400005668 Solanum tuberosum HOM05D002719 ORTHO05D002938 9.2e-15 86.7 615 21.0
BcaB03g15080 Brassica carinata HOM05D007058 ORTHO05D009036 1.2e-14 86.3 593 22.3
AT1G73750 Arabidopsis thaliana HOM05D002719 ORTHO05D002938 2.0e-14 85.5 592 20.4
ClCG04G010880 Citrullus lanatus HOM05D002719 ORTHO05D002938 2.7e-14 85.1 630 20.0
MELO3C002111.2 Cucumis melo HOM05D002719 ORTHO05D002938 3.5e-14 84.7 627 19.9
THA.LOC104812153 Tarenaya hassleriana HOM05D002719 ORTHO05D002938 5.9e-14 84.0 266 25.2
RcHm_v2.0_Chr7g0179391 Rosa chinensis HOM05D002719 ORTHO05D002938 1.0e-13 83.2 421 25.4
Thhalv10018520m.g Eutrema salsugineum HOM05D002719 ORTHO05D002938 2.3e-13 82.0 600 20.2
FvH4_5g16710 Fragaria vesca HOM05D002719 ORTHO05D002938 6.6e-13 80.5 619 21.6
FAN04G0541 Fragaria x ananassa HOM05D002719 ORTHO05D002938 8.6e-13 80.1 591 21.8
FAN08G3241 Fragaria x ananassa HOM05D002719 ORTHO05D002938 1.1e-12 79.7 619 22.0
Nitab4.5_0001456g0090 Nicotiana tabacum HOM05D002719 ORTHO05D002938 1.1e-12 79.7 223 26.9
Lsat_1_v5_gn_8_142041 Lactuca sativa HOM05D002719 ORTHO05D002938 1.9e-12 79.0 263 25.5
Oeu000989.1 Olea europaea HOM05D002719 ORTHO05D002938 1.9e-12 79.0 424 24.1
C06p47900 Brassica napus HOM05D002719 ORTHO05D002938 2.5e-12 78.6 262 27.1
BolC6t39825H Brassica oleracea HOM05D002719 ORTHO05D002938 2.5e-12 78.6 262 27.1
Aa31LG4G4080 Aethionema arabicum HOM05D002719 ORTHO05D002938 3.3e-12 78.2 605 19.3
CBR_g3157 Chara braunii HOM05D002719 ORTHO05D002938 3.3e-12 78.2 127 37.0
BraA07t31510Z Brassica rapa HOM05D002719 ORTHO05D002938 4.3e-12 77.8 268 26.1
Cpa.g.sc3.458 Carica papaya HOM05D007058 ORTHO05D009036 4.3e-12 77.8 217 27.6
MD06G1220800 Malus domestica HOM05D002719 ORTHO05D002938 4.3e-12 77.8 431 23.2
Nitab4.5_0006894g0060 Nicotiana tabacum HOM05D002719 ORTHO05D002938 4.3e-12 77.8 222 26.6
Actinidia14924 Actinidia chinensis HOM05D002719 ORTHO05D002938 5.6e-12 77.4 458 23.4
Hund02351 Selenicereus undatus HOM05D002719 ORTHO05D002938 9.5e-12 76.6 611 20.5
Ciclev10019975m.g Citrus clementina HOM05D002719 ORTHO05D002938 1.2e-11 76.3 436 22.0
PGR083G1550 Punica granatum HOM05D002719 ORTHO05D002938 1.2e-11 76.3 664 19.7
Sp5g28940 Schrenkiella parvula HOM05D002719 ORTHO05D002938 1.2e-11 76.3 422 23.2
Os08g0359300 Oryza sativa ssp. japonica HOM05D002719 ORTHO05D002938 2.8e-11 75.1 144 33.3
Pp3c8_17160 Physcomitrium patens HOM05D002719 ORTHO05D002938 3.6e-11 74.7 115 34.8
TWI15G0779 Tripterygium wilfordii HOM05D002719 ORTHO05D002938 8.0e-11 73.6 669 20.8
Manes.05G120100 Manihot esculenta HOM05D002719 ORTHO05D002938 1.1e-10 73.2 458 22.5
CAN.G1129.47 Capsicum annuum HOM05D002719 ORTHO05D002938 1.4e-10 72.8 470 22.3
FAN18G0288 Fragaria x ananassa HOM05D002719 ORTHO05D002938 3.1e-10 71.6 540 22.4
Os01g0692600 Oryza sativa ssp. japonica HOM05D002719 ORTHO05D002938 8.9e-10 70.1 111 33.3
Sed0014158 Sechium edule HOM05D002719 ORTHO05D002938 8.9e-10 70.1 248 24.2
Cfa019727 Carpinus fangiana HOM05D002719 ORTHO05D002938 1.2e-09 69.7 435 21.6
Rhsim12G0141300 Rhododendron simsii HOM05D002719 ORTHO05D002938 1.2e-09 69.7 720 20.3
Cre10.g451100 Chlamydomonas reinhardtii HOM05D002719 ORTHO05D002938 1.5e-09 69.3 117 38.5
Zm00001eb042900 Zea mays HOM05D002719 ORTHO05D002938 2.0e-09 68.9 143 28.7
GSVIVG01008344001 Vitis vinifera HOM05D002719 ORTHO05D002938 2.6e-09 68.6 138 31.2
Atru.chr11.241 Acer truncatum HOM05D002719 ORTHO05D002938 3.4e-09 68.2 417 24.0
TWI75G0364 Tripterygium wilfordii HOM05D002719 ORTHO05D002938 3.4e-09 68.2 133 29.3
ECA233G2273 Erigeron canadensis HOM05D002719 ORTHO05D002938 4.4e-09 67.8 117 31.6
Zm00001eb156070 Zea mays HOM05D002719 ORTHO05D002938 4.4e-09 67.8 127 32.3
HanXRQChr17g0559801 Helianthus annuus HOM05D002719 ORTHO05D002938 5.8e-09 67.4 685 19.4
Pp3c6_12730 Physcomitrium patens HOM05D002719 ORTHO05D002938 2.2e-08 65.5 119 31.9
CsaV3_5G028770 Cucumis sativus L. HOM05D002719 ORTHO05D002938 2.9e-08 65.1 111 31.5
Dinv31592 Davidia involucrata HOM05D002719 ORTHO05D002938 2.9e-08 65.1 148 27.7
FAN13G1046 Fragaria x ananassa HOM05D002719 ORTHO05D002938 3.7e-08 64.7 266 24.1
Nn3g17959 Nelumbo nucifera HOM05D002719 ORTHO05D002938 3.7e-08 64.7 687 19.9
HPP92_021341 Vanilla planifolia HOM05D002719 ORTHO05D002938 3.7e-08 64.7 127 29.9
Aqoxy3G04035 Aquilegia oxysepala HOM05D002719 ORTHO05D002938 4.9e-08 64.3 128 26.6
Oeu057749.1 Olea europaea HOM05D002719 ORTHO05D002938 4.9e-08 64.3 111 30.6
Oeu057753.1 Olea europaea HOM05D002719 ORTHO05D002938 4.9e-08 64.3 111 30.6
Oeu057758.1 Olea europaea HOM05D002719 ORTHO05D002938 4.9e-08 64.3 111 30.6
Sed0012171 Sechium edule HOM05D002719 ORTHO05D002938 4.9e-08 64.3 111 30.6
Actinidia18916 Actinidia chinensis HOM05D002719 ORTHO05D002938 6.4e-08 63.9 177 25.4
AagrBONN_evm.TU.Sc2ySwM_368.1681 Anthoceros agrestis HOM05D002719 ORTHO05D002938 6.4e-08 63.9 115 31.3
MSTRG.13558 Avicennia marina HOM05D002719 ORTHO05D002938 6.4e-08 63.9 111 30.6
Potri.012G053700 Populus trichocarpa HOM05D002719 ORTHO05D002938 6.4e-08 63.9 455 22.4
QL01p010709 Quercus lobata HOM05D002719 ORTHO05D002938 6.4e-08 63.9 111 30.6
QL01p010785 Quercus lobata HOM05D002719 ORTHO05D002938 6.4e-08 63.9 111 30.6
SalBow8G0454 Salvia bowleyana HOM05D002719 ORTHO05D002938 8.3e-08 63.5 111 29.7
Duzib248G1534 Durio zibethinus HOM05D002719 ORTHO05D002938 1.1e-07 63.2 111 29.7
Gohir.D05G324400 Gossypium hirsutum HOM05D002719 ORTHO05D002938 1.1e-07 63.2 111 30.6
PSO782G2575 Papaver somniferum HOM05D002719 ORTHO05D002938 1.1e-07 63.2 111 30.6
Atru.chr11.242 Acer truncatum HOM05D002719 ORTHO05D002938 1.4e-07 62.8 111 28.8
CDE04G0339 Ceratophyllum demersum HOM05D002719 ORTHO05D002938 1.4e-07 62.8 111 32.4
CDE06G1798 Ceratophyllum demersum HOM05D002719 ORTHO05D002938 1.4e-07 62.8 111 32.4
MELO3C005338.2 Cucumis melo HOM05D002719 ORTHO05D002938 1.4e-07 62.8 111 30.6
TAR535G0004 Trochodendron aralioides HOM05D002719 ORTHO05D002938 1.4e-07 62.8 111 30.6
TAR629G2090 Trochodendron aralioides HOM05D002719 ORTHO05D002938 1.4e-07 62.8 111 30.6
Cfa015834 Carpinus fangiana HOM05D002719 ORTHO05D002938 1.9e-07 62.4 111 29.7
Gohir.A05G322300 Gossypium hirsutum HOM05D002719 ORTHO05D002938 1.9e-07 62.4 111 30.6
Gorai.009G348200 Gossypium raimondii HOM05D002719 ORTHO05D002938 1.9e-07 62.4 111 30.6
PSO063G4747 Papaver somniferum HOM05D002719 ORTHO05D002938 1.9e-07 62.4 111 31.5
VMungo0464G1318 Vigna mungo HOM05D002719 ORTHO05D002938 1.9e-07 62.4 124 32.3
Ah.03g138460 Amaranthus hybridus HOM05D002719 ORTHO05D002938 2.4e-07 62.0 146 27.4
MSTRG.2216 Avicennia marina HOM05D002719 ORTHO05D002938 2.4e-07 62.0 111 28.8
CsaV3_1G006950 Cucumis sativus L. HOM05D002719 ORTHO05D002938 2.4e-07 62.0 585 18.5
Dinv16140 Davidia involucrata HOM05D002719 ORTHO05D002938 2.4e-07 62.0 128 25.0
SEGI_33596 Sequoiadendron giganteum HOM05D002719 ORTHO05D002938 2.4e-07 62.0 115 28.7
vmacro16432 Vaccinium macrocarpon HOM05D002719 ORTHO05D002938 2.4e-07 62.0 111 30.6
ATR0681G102 Amborella trichopoda HOM05D002719 ORTHO05D002938 3.2e-07 61.6 119 29.4
Cc11_g09630 Coffea canephora HOM05D002719 ORTHO05D002938 3.2e-07 61.6 111 28.8
Migut.E00375 Erythranthe guttata HOM05D002719 ORTHO05D002938 3.2e-07 61.6 111 28.8
Manes.14G107200 Manihot esculenta HOM05D002719 ORTHO05D002938 3.2e-07 61.6 111 28.8
vmacro10602 Vaccinium macrocarpon HOM05D002719 ORTHO05D002938 3.2e-07 61.6 111 30.6
arahy.Tifrunner.gnm1.ann1.SH0PSP Arachis hypogaea HOM05D002719 ORTHO05D002938 4.1e-07 61.2 111 27.9
AUR62002809 Chenopodium quinoa HOM05D002719 ORTHO05D002938 4.1e-07 61.2 113 28.3
Gohir.A04G099900 Gossypium hirsutum HOM05D002719 ORTHO05D002938 4.1e-07 61.2 111 30.6
Nn4g23962 Nelumbo nucifera HOM05D002719 ORTHO05D002938 4.1e-07 61.2 151 27.2
Sopen03g037800 Solanum pennellii HOM05D000004 ORTHO05D000002 4.1e-07 61.2 570 20.9
arahy.Tifrunner.gnm1.ann1.GC3M86 Arachis hypogaea HOM05D002719 ORTHO05D002938 5.4e-07 60.8 458 21.4
BcaB03g13076 Brassica carinata HOM05D002719 ORTHO05D002938 5.4e-07 60.8 111 27.9
Duzib205G2064 Durio zibethinus HOM05D002719 ORTHO05D002938 5.4e-07 60.8 148 27.7
Gohir.D04G139100 Gossypium hirsutum HOM05D002719 ORTHO05D002938 5.4e-07 60.8 111 30.6
Gorai.012G124000 Gossypium raimondii HOM05D002719 ORTHO05D002938 5.4e-07 60.8 111 30.6
Lj3A880T110 Lonicera japonica HOM05D002719 ORTHO05D002938 5.4e-07 60.8 111 27.9
Phvul.007G032332 Phaseolus vulgaris HOM05D002719 ORTHO05D002938 5.4e-07 60.8 111 30.6
Potri.008G124400 Populus trichocarpa HOM05D002719 ORTHO05D002938 5.4e-07 60.8 111 28.8
Solyc04g007450.4 Solanum lycopersicum HOM05D002719 ORTHO05D002938 5.4e-07 60.8 111 27.9
Sopen04g002510 Solanum pennellii HOM05D002719 ORTHO05D002938 5.4e-07 60.8 111 27.9
PGSC0003DMG400005972 Solanum tuberosum HOM05D002719 ORTHO05D002938 5.4e-07 60.8 111 27.9
SGA_v2.0_scaffold170G38805 Striga asiatica HOM05D002719 ORTHO05D002938 5.4e-07 60.8 111 27.0
Thecc.03G043000 Theobroma cacao HOM05D002719 ORTHO05D002938 5.4e-07 60.8 121 28.1
BcaC07g38768 Brassica carinata HOM05D002719 ORTHO05D002938 7.0e-07 60.5 111 27.9
C08p17010 Brassica napus HOM05D002719 ORTHO05D002938 7.0e-07 60.5 111 27.9
BolC8t49326H Brassica oleracea HOM05D002719 ORTHO05D002938 7.0e-07 60.5 111 27.9
DCAR_023629 Daucus carota HOM05D002719 ORTHO05D002938 7.0e-07 60.5 111 27.9
Nitab4.5_0000045g0370 Nicotiana tabacum HOM05D002719 ORTHO05D002938 7.0e-07 60.5 111 29.7
Nitab4.5_0000345g0050 Nicotiana tabacum HOM05D002719 ORTHO05D002938 7.0e-07 60.5 111 29.7
Sc04g0006000 Simmondsia chinensis HOM05D002719 ORTHO05D002938 7.0e-07 60.5 157 29.3
A09p61610 Brassica napus HOM05D002719 ORTHO05D002938 9.2e-07 60.1 111 29.7
BraA09t41533Z Brassica rapa HOM05D002719 ORTHO05D002938 9.2e-07 60.1 111 29.7
CSS0035633 Camellia sinensis var. sinensis HOM05D002719 ORTHO05D002938 9.2e-07 60.1 159 27.0
Carub.0001s1483 Capsella rubella HOM05D002719 ORTHO05D002938 9.2e-07 60.1 111 27.9
Cpa.g.sc65.70 Carica papaya HOM05D002719 ORTHO05D002938 9.2e-07 60.1 111 28.8
COL.COLO4_32135 Corchorus olitorius HOM05D002719 ORTHO05D002938 9.2e-07 60.1 111 27.9
Thhalv10007211m.g Eutrema salsugineum HOM05D002719 ORTHO05D002938 9.2e-07 60.1 111 27.9
Sp1g13440 Schrenkiella parvula HOM05D002719 ORTHO05D002938 9.2e-07 60.1 111 27.9
THA.LOC104823959 Tarenaya hassleriana HOM05D002719 ORTHO05D002938 9.2e-07 60.1 111 29.7
AL1G27130 Arabidopsis lyrata HOM05D002719 ORTHO05D002938 1.2e-06 59.7 111 27.9
EL10Ac6g14301 Beta vulgaris HOM05D002719 ORTHO05D002938 1.2e-06 59.7 111 28.8
CSS0011989 Camellia sinensis var. sinensis HOM05D002719 ORTHO05D002938 1.2e-06 59.7 111 28.8
CiPaw.15G135900 Carya illinoinensis HOM05D002719 ORTHO05D002938 1.2e-06 59.7 111 28.8
Lalb_Chr02g0145731 Lupinus albus HOM05D002719 ORTHO05D002938 1.2e-06 59.7 111 28.8
Peaxi162Scf00526g00821 Petunia axillaris HOM05D002719 ORTHO05D002938 1.2e-06 59.7 111 28.8
Solyc09g059670.4 Solanum lycopersicum HOM05D002719 ORTHO05D002938 1.2e-06 59.7 111 28.8
Sopen09g022920 Solanum pennellii HOM05D002719 ORTHO05D002938 1.2e-06 59.7 111 28.8
TPR.G4929 Trifolium pratense HOM05D002719 ORTHO05D002938 1.2e-06 59.7 111 28.8
A08p31740 Brassica napus HOM05D002719 ORTHO05D002938 1.6e-06 59.3 111 27.9
C08p45190 Brassica napus HOM05D002719 ORTHO05D002938 1.6e-06 59.3 111 27.9
BolC8t52067H Brassica oleracea HOM05D002719 ORTHO05D002938 1.6e-06 59.3 111 27.9
BraA08t35096Z Brassica rapa HOM05D002719 ORTHO05D002938 1.6e-06 59.3 111 27.9
Ciclev10014599m.g Citrus clementina HOM05D002719 ORTHO05D002938 1.6e-06 59.3 420 21.9
Gohir.A09G050100 Gossypium hirsutum HOM05D002719 ORTHO05D002938 1.6e-06 59.3 385 20.3
Gohir.D09G051300 Gossypium hirsutum HOM05D002719 ORTHO05D002938 1.6e-06 59.3 131 26.0
Gorai.006G058300 Gossypium raimondii HOM05D002719 ORTHO05D002938 1.6e-06 59.3 131 26.0
Peaxi162Scf00564g00517 Petunia axillaris HOM05D002719 ORTHO05D002938 1.6e-06 59.3 111 27.9
Prupe.5G225200 Prunus persica HOM05D002719 ORTHO05D002938 1.6e-06 59.3 127 29.9
Thecc.02G221500 Theobroma cacao HOM05D002719 ORTHO05D002938 1.6e-06 59.3 111 28.8
Ah.02g127700 Amaranthus hybridus HOM05D002719 ORTHO05D002938 2.0e-06 58.9 111 27.9
Nitab4.5_0005800g0020 Nicotiana tabacum HOM05D002719 ORTHO05D002938 2.0e-06 58.9 111 27.0
Sabra10G0090100 Salix brachista HOM05D002719 ORTHO05D002938 2.0e-06 58.9 131 27.5
PGSC0003DMG400026880 Solanum tuberosum HOM05D002719 ORTHO05D002938 2.0e-06 58.9 111 28.8
Aa31LG1G60 Aethionema arabicum HOM05D002719 ORTHO05D002938 2.7e-06 58.5 111 27.9
AT1G15060 Arabidopsis thaliana HOM05D002719 ORTHO05D002938 2.7e-06 58.5 111 27.0
Glyma.09G180200 Glycine max HOM05D002719 ORTHO05D002938 2.7e-06 58.5 111 28.8
Medtr6g082420 Medicago truncatula HOM05D002719 ORTHO05D002938 2.7e-06 58.5 131 26.7
Potri.010G119700 Populus trichocarpa HOM05D002719 ORTHO05D002938 2.7e-06 58.5 111 28.8
RcHm_v2.0_Chr4g0434381 Rosa chinensis HOM05D002719 ORTHO05D002938 2.7e-06 58.5 111 27.0
CiPaw.06G016300 Carya illinoinensis HOM05D002719 ORTHO05D002938 3.5e-06 58.2 111 27.0
Ca_06892_v3 Cicer arietinum L. HOM05D002719 ORTHO05D002938 3.5e-06 58.2 145 26.9
Haze_00657 Corylus avellana HOM05D002719 ORTHO05D002938 3.5e-06 58.2 75 38.7
Glyma.10G270400 Glycine max HOM05D002719 ORTHO05D002938 3.5e-06 58.2 111 28.8
Medtr1g109500 Medicago truncatula HOM05D002719 ORTHO05D002938 3.5e-06 58.2 130 24.6
PGR119G1760 Punica granatum HOM05D002719 ORTHO05D002938 3.5e-06 58.2 111 26.1
Sabra08G0094100 Salix brachista HOM05D002719 ORTHO05D002938 3.5e-06 58.2 436 22.2
CANSAT80G0832 Cannabis sativa HOM05D002719 ORTHO05D002938 4.6e-06 57.8 662 19.5
CAN.G396.13 Capsicum annuum HOM05D002719 ORTHO05D002938 4.6e-06 57.8 113 29.2
CAN.G396.5 Capsicum annuum HOM05D002719 ORTHO05D002938 4.6e-06 57.8 113 29.2
FvH4_4g26690 Fragaria vesca HOM05D002719 ORTHO05D002938 4.6e-06 57.8 111 26.1
FAN07G1177 Fragaria x ananassa HOM05D002719 ORTHO05D002938 4.6e-06 57.8 111 26.1
FAN12G2551 Fragaria x ananassa HOM05D002719 ORTHO05D002938 4.6e-06 57.8 111 26.1
FAN22G0228 Fragaria x ananassa HOM05D002719 ORTHO05D002938 4.6e-06 57.8 111 26.1
Glyma.20G120900 Glycine max HOM05D002719 ORTHO05D002938 4.6e-06 57.8 111 28.8
VMungo0720G2932 Vigna mungo HOM05D002719 ORTHO05D002938 4.6e-06 57.8 111 28.8
DCAR_023222 Daucus carota HOM05D002719 ORTHO05D002938 6.0e-06 57.4 62 40.3
Glyma.07G097800 Glycine max HOM05D002719 ORTHO05D002938 6.0e-06 57.4 148 27.0
Rhsim09G0103600 Rhododendron simsii HOM05D002719 ORTHO05D002938 6.0e-06 57.4 111 27.9
Hund25035 Selenicereus undatus HOM05D002719 ORTHO05D002938 6.0e-06 57.4 111 27.0
Lsat_1_v5_gn_4_14820 Lactuca sativa HOM05D002719 ORTHO05D002938 7.8e-06 57.0 111 27.9
Lj5g0010367 Lotus japonicus HOM05D002719 ORTHO05D002938 7.8e-06 57.0 111 28.8
TPR.G28412 Trifolium pratense HOM05D002719 ORTHO05D002938 7.8e-06 57.0 429 22.6


User provided reference genes

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