Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO12G244 Micromonas commoda HOM05D001460 ORTHO05D001337 8.1e-86 320.5 174 100.0
MCO16G238 Micromonas commoda HOM05D001460 ORTHO05D001337 5.2e-24 115.2 170 46.5
PRCOL_00000235 Prasinoderma coloniale HOM05D001460 ORTHO05D001337 5.9e-20 101.7 111 48.6
PRCOL_00000234 Prasinoderma coloniale HOM05D001460 ORTHO05D001337 2.0e-15 86.7 133 36.8
PRCOL_00002372 Prasinoderma coloniale HOM05D001460 ORTHO05D001337 1.1e-13 80.9 109 38.5
Cre09.g394325 Chlamydomonas reinhardtii HOM05D001460 ORTHO05D001337 3.0e-11 72.8 139 35.3
Thhalv10021557m.g Eutrema salsugineum HOM05D001460 ORTHO05D001337 2.1e-09 66.6 111 41.4
MCO07G312 Micromonas commoda HOM05D001460 ORTHO05D049038 2.8e-09 66.2 130 34.6
Mapoly0047s0106 Marchantia polymorpha HOM05D001460 ORTHO05D001337 3.6e-09 65.9 112 39.3
SEGI_10682 Sequoiadendron giganteum HOM05D001460 ORTHO05D001337 6.2e-09 65.1 155 34.8
SEGI_19370 Sequoiadendron giganteum HOM05D001460 ORTHO05D001337 1.1e-08 64.3 112 40.2
Cre08.g384650 Chlamydomonas reinhardtii HOM05D001460 ORTHO05D001337 1.4e-08 63.9 109 40.4
MCO10G318 Micromonas commoda HOM05D001460 ORTHO05D001337 2.3e-08 63.2 169 33.7
MCO03G590 Micromonas commoda HOM05D001460 ORTHO05D001337 3.1e-08 62.8 166 33.1
Peaxi162Scf00316g00046 Petunia axillaris HOM05D001460 ORTHO05D001337 3.1e-08 62.8 113 40.7
Peaxi162Scf00316g00411 Petunia axillaris HOM05D001460 ORTHO05D001337 3.1e-08 62.8 113 40.7
SMO172G0002 Selaginella moellendorffii HOM05D001460 ORTHO05D001337 4.0e-08 62.4 114 38.6
Ca_10849_v3 Cicer arietinum L. HOM05D001460 ORTHO05D001337 5.2e-08 62.0 112 40.2
Medtr1g102570 Medicago truncatula HOM05D001460 ORTHO05D001337 5.2e-08 62.0 112 39.3
Medtr1g102780 Medicago truncatula HOM05D001460 ORTHO05D001337 5.2e-08 62.0 112 39.3
Medtr1g102800 Medicago truncatula HOM05D001460 ORTHO05D001337 5.2e-08 62.0 112 39.3
Aqoxy5G00396 Aquilegia oxysepala HOM05D001460 ORTHO05D001337 8.9e-08 61.2 112 39.3
PSO017G5118 Papaver somniferum HOM05D001460 ORTHO05D001337 8.9e-08 61.2 112 37.5
PSO478G2682 Papaver somniferum HOM05D001460 ORTHO05D001337 8.9e-08 61.2 112 37.5
Prupe.1G021500 Prunus persica HOM05D001460 ORTHO05D001337 8.9e-08 61.2 113 37.2
Sabra08G0120300 Salix brachista HOM05D001460 ORTHO05D001337 8.9e-08 61.2 118 37.3
HanXRQChr03g0083841 Helianthus annuus HOM05D001460 ORTHO05D001337 1.2e-07 60.8 112 35.7
HanXRQChr03g0085431 Helianthus annuus HOM05D001460 ORTHO05D001337 1.2e-07 60.8 112 35.7
Medtr1g102810 Medicago truncatula HOM05D001460 ORTHO05D001337 1.2e-07 60.8 133 35.3
Medtr1g102830 Medicago truncatula HOM05D001460 ORTHO05D001337 1.2e-07 60.8 133 35.3
PSO017G4466 Papaver somniferum HOM05D001460 ORTHO05D001337 1.2e-07 60.8 112 37.5
PSO017G5420 Papaver somniferum HOM05D001460 ORTHO05D001337 1.2e-07 60.8 112 37.5
PSO210G0546 Papaver somniferum HOM05D001460 ORTHO05D001337 1.2e-07 60.8 112 37.5
SEGI_13528 Sequoiadendron giganteum HOM05D001460 ORTHO05D001337 1.2e-07 60.8 113 36.3
ECA240G3760 Erigeron canadensis HOM05D001460 ORTHO05D001337 1.5e-07 60.5 112 36.6
Lalb_Chr21g0304781 Lupinus albus HOM05D001460 ORTHO05D001337 1.5e-07 60.5 111 40.5
PSO017G1276 Papaver somniferum HOM05D001460 ORTHO05D001337 1.5e-07 60.5 112 37.5
PSO017G1861 Papaver somniferum HOM05D001460 ORTHO05D001337 1.5e-07 60.5 112 37.5
PSO317G0001 Papaver somniferum HOM05D001460 ORTHO05D001337 1.5e-07 60.5 112 37.5
PSO689G0001 Papaver somniferum HOM05D001460 ORTHO05D001337 1.5e-07 60.5 112 37.5
Lalb_Chr06g0160741 Lupinus albus HOM05D001460 ORTHO05D001337 2.0e-07 60.1 113 39.8
Nitab4.5_0000977g0030 Nicotiana tabacum HOM05D001460 ORTHO05D001337 2.0e-07 60.1 113 39.8
PSO017G2787 Papaver somniferum HOM05D001460 ORTHO05D001337 2.0e-07 60.1 112 36.6
PSO647G0001 Papaver somniferum HOM05D001460 ORTHO05D001337 2.0e-07 60.1 112 37.5
PSO675G0001 Papaver somniferum HOM05D001460 ORTHO05D001337 2.0e-07 60.1 112 37.5
PSO675G2699 Papaver somniferum HOM05D001460 ORTHO05D001337 2.0e-07 60.1 112 37.5
PSO675G4991 Papaver somniferum HOM05D001460 ORTHO05D001337 2.0e-07 60.1 112 37.5
Psat6g204920 Pisum sativum HOM05D001460 ORTHO05D001337 2.0e-07 60.1 112 38.4
Migut.G00385 Erythranthe guttata HOM05D001460 ORTHO05D001337 2.6e-07 59.7 112 38.4
Nitab4.5_0002541g0040 Nicotiana tabacum HOM05D001460 ORTHO05D001337 2.6e-07 59.7 113 38.1
Peaxi162Scf00316g00329 Petunia axillaris HOM05D001460 ORTHO05D001337 2.6e-07 59.7 113 39.8
vmacro15372 Vaccinium macrocarpon HOM05D001460 ORTHO05D001337 2.6e-07 59.7 123 33.3
Thecc.04G238900 Theobroma cacao HOM05D001460 ORTHO05D001337 3.4e-07 59.3 111 37.8
Cpa.g.sc44.124 Carica papaya HOM05D001460 ORTHO05D001337 4.4e-07 58.9 112 36.6
COL.COLO4_21566 Corchorus olitorius HOM05D001460 ORTHO05D001337 4.4e-07 58.9 111 38.7
ECA240G3920 Erigeron canadensis HOM05D001460 ORTHO05D001337 4.4e-07 58.9 112 35.7
MD13G1200100 Malus domestica HOM05D001460 ORTHO05D001337 4.4e-07 58.9 117 35.0
Mapoly0091s0078 Marchantia polymorpha HOM05D001460 ORTHO05D001337 4.4e-07 58.9 131 34.4
Psat6g204960 Pisum sativum HOM05D001460 ORTHO05D001337 4.4e-07 58.9 112 39.3
Potri.008G158000 Populus trichocarpa HOM05D001460 ORTHO05D001337 4.4e-07 58.9 112 37.5
Potri.008G158200 Populus trichocarpa HOM05D001460 ORTHO05D001337 4.4e-07 58.9 112 37.5
EL10Ac5g12536 Beta vulgaris HOM05D001460 ORTHO05D001337 5.8e-07 58.5 112 36.6
Nitab4.5_0007068g0040 Nicotiana tabacum HOM05D001460 ORTHO05D001337 5.8e-07 58.5 113 39.8
Prupe.1G021400 Prunus persica HOM05D001460 ORTHO05D001337 5.8e-07 58.5 111 36.9
Sopen09g031560 Solanum pennellii HOM05D001460 ORTHO05D001337 5.8e-07 58.5 114 36.8
SGA_v2.0_scaffold191G40426 Striga asiatica HOM05D001460 ORTHO05D001337 5.8e-07 58.5 115 37.4
TPR.G26125 Trifolium pratense HOM05D001460 ORTHO05D001337 5.8e-07 58.5 133 35.3
BcaC05g28012 Brassica carinata HOM05D001460 ORTHO05D001337 7.5e-07 58.2 111 37.8
C05p40270 Brassica napus HOM05D001460 ORTHO05D001337 7.5e-07 58.2 111 37.8
BolC5t32769H Brassica oleracea HOM05D001460 ORTHO05D001337 7.5e-07 58.2 111 37.8
CAN.G1437.9 Capsicum annuum HOM05D001460 ORTHO05D001337 7.5e-07 58.2 113 38.9
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 7.5e-07 58.2 112 34.8
MD13G1200600 Malus domestica HOM05D001460 ORTHO05D001337 7.5e-07 58.2 111 36.9
Solyc09g082700.2 Solanum lycopersicum HOM05D001460 ORTHO05D001337 7.5e-07 58.2 114 36.8
BcaB06g26399 Brassica carinata HOM05D001460 ORTHO05D001337 9.8e-07 57.8 111 37.8
A05p25880 Brassica napus HOM05D001460 ORTHO05D001337 9.8e-07 57.8 111 37.8
BraA05t21476Z Brassica rapa HOM05D001460 ORTHO05D001337 9.8e-07 57.8 111 37.8
Lj3C726T2 Lonicera japonica HOM05D001460 ORTHO05D001337 9.8e-07 57.8 118 35.6
Sabra08G0120600 Salix brachista HOM05D001460 ORTHO05D001337 9.8e-07 57.8 147 35.4
Solyc09g082690.3 Solanum lycopersicum HOM05D001460 ORTHO05D001337 9.8e-07 57.8 114 36.8
BcaC01g03416 Brassica carinata HOM05D001460 ORTHO05D001337 1.3e-06 57.4 111 37.8
BcaC01g03424 Brassica carinata HOM05D001460 ORTHO05D001337 1.3e-06 57.4 111 37.8
A03p42970 Brassica napus HOM05D001460 ORTHO05D001337 1.3e-06 57.4 111 37.8
C03p52750 Brassica napus HOM05D001460 ORTHO05D001337 1.3e-06 57.4 111 37.8
C03p52780 Brassica napus HOM05D001460 ORTHO05D001337 1.3e-06 57.4 111 37.8
BraA03t13441Z Brassica rapa HOM05D001460 ORTHO05D001337 1.3e-06 57.4 111 37.8
Mapoly0004s0164 Marchantia polymorpha HOM05D001460 ORTHO05D001337 1.3e-06 57.4 111 38.7
RcHm_v2.0_Chr4g0387801 Rosa chinensis HOM05D001460 ORTHO05D001337 1.3e-06 57.4 111 36.0
SEGI_05907 Sequoiadendron giganteum HOM05D001460 ORTHO05D001337 1.3e-06 57.4 112 34.8
arahy.Tifrunner.gnm1.ann1.0C8NZA Arachis hypogaea HOM05D001460 ORTHO05D001337 1.7e-06 57.0 111 37.8
arahy.Tifrunner.gnm1.ann1.JZ1PRS Arachis hypogaea HOM05D001460 ORTHO05D001337 1.7e-06 57.0 111 37.8
BcaB04g20492 Brassica carinata HOM05D001460 ORTHO05D001337 1.7e-06 57.0 111 37.8
BcaC09g49212 Brassica carinata HOM05D001460 ORTHO05D001337 1.7e-06 57.0 111 37.8
A01p32340 Brassica napus HOM05D001460 ORTHO05D001337 1.7e-06 57.0 111 37.8
C01p41350 Brassica napus HOM05D001460 ORTHO05D001337 1.7e-06 57.0 111 37.8
BolC1t04095H Brassica oleracea HOM05D001460 ORTHO05D001337 1.7e-06 57.0 111 37.8
BraA01t03359Z Brassica rapa HOM05D001460 ORTHO05D001337 1.7e-06 57.0 111 37.8
CDE05G0060 Ceratophyllum demersum HOM05D001460 ORTHO05D001337 1.7e-06 57.0 112 35.7
AUR62030476 Chenopodium quinoa HOM05D001460 ORTHO05D001337 1.7e-06 57.0 112 36.6
AUR62030478 Chenopodium quinoa HOM05D001460 ORTHO05D001337 1.7e-06 57.0 112 36.6
Duzib151G0114 Durio zibethinus HOM05D001460 ORTHO05D001337 1.7e-06 57.0 111 36.9
Peaxi162Scf35631g00002 Petunia axillaris HOM05D001460 ORTHO05D001337 1.7e-06 57.0 98 41.8
RcHm_v2.0_Chr6g0286531 Rosa chinensis HOM05D001460 ORTHO05D001337 1.7e-06 57.0 113 33.6
Sabra08G0120500 Salix brachista HOM05D001460 ORTHO05D001337 1.7e-06 57.0 112 36.6
Actinidia18529 Actinidia chinensis HOM05D000352 ORTHO05D000260 2.2e-06 56.6 100 38.0
Ciclev10005974m.g Citrus clementina HOM05D001460 ORTHO05D001337 2.2e-06 56.6 114 36.8
ECA240G0786 Erigeron canadensis HOM05D001460 ORTHO05D001337 2.2e-06 56.6 112 34.8
ECA240G1802 Erigeron canadensis HOM05D001460 ORTHO05D001337 2.2e-06 56.6 112 34.8
FAN27G2746 Fragaria x ananassa HOM05D001460 ORTHO05D001337 2.2e-06 56.6 113 34.5
Lsat_1_v5_gn_6_76240 Lactuca sativa HOM05D001460 ORTHO05D001337 2.2e-06 56.6 112 34.8
Lsat_1_v5_gn_6_76700 Lactuca sativa HOM05D001460 ORTHO05D001337 2.2e-06 56.6 112 34.8
Lsat_1_v5_gn_6_76760 Lactuca sativa HOM05D001460 ORTHO05D001337 2.2e-06 56.6 112 34.8
Mapoly0050s0053 Marchantia polymorpha HOM05D001460 ORTHO05D001337 2.2e-06 56.6 108 38.9
Mapoly0278s0004 Marchantia polymorpha HOM05D001460 ORTHO05D001337 2.2e-06 56.6 108 38.9
Rhsim02G0028800 Rhododendron simsii HOM05D001460 ORTHO05D001337 2.2e-06 56.6 122 34.4
RcHm_v2.0_Chr6g0286501 Rosa chinensis HOM05D001460 ORTHO05D001337 2.2e-06 56.6 113 33.6
RcHm_v2.0_Chr6g0286521 Rosa chinensis HOM05D001460 ORTHO05D001337 2.2e-06 56.6 113 33.6
SalBow2G3492 Salvia bowleyana HOM05D001460 ORTHO05D001337 2.2e-06 56.6 112 33.9
TPR.G18915 Trifolium pratense HOM05D001460 ORTHO05D001337 2.2e-06 56.6 112 37.5
EL10Ac5g12538 Beta vulgaris HOM05D001460 ORTHO05D001337 2.9e-06 56.2 112 36.6
Carub.0007s2751 Capsella rubella HOM05D001460 ORTHO05D001337 2.9e-06 56.2 111 37.8
AUR62030819 Chenopodium quinoa HOM05D001460 ORTHO05D001337 2.9e-06 56.2 112 36.6
AUR62030820 Chenopodium quinoa HOM05D001460 ORTHO05D001337 2.9e-06 56.2 112 36.6
Cre14.g626750 Chlamydomonas reinhardtii HOM05D001460 ORTHO05D001337 2.9e-06 56.2 111 34.2
Dinv14048 Davidia involucrata HOM05D001460 ORTHO05D001337 2.9e-06 56.2 112 35.7
FvH4_2g20400 Fragaria vesca HOM05D001460 ORTHO05D001337 2.9e-06 56.2 113 36.3
FvH4_2g20420 Fragaria vesca HOM05D001460 ORTHO05D001337 2.9e-06 56.2 113 36.3
FAN24G0037 Fragaria x ananassa HOM05D001460 ORTHO05D001337 2.9e-06 56.2 113 36.3
FAN24G0429 Fragaria x ananassa HOM05D001460 ORTHO05D001337 2.9e-06 56.2 113 36.3
PSO063G3678 Papaver somniferum HOM05D001460 ORTHO05D001337 2.9e-06 56.2 112 37.5
RhsimUnG0024700 Rhododendron simsii HOM05D001460 ORTHO05D001337 2.9e-06 56.2 122 34.4
RhsimUnG0024900 Rhododendron simsii HOM05D001460 ORTHO05D001337 2.9e-06 56.2 122 34.4
Sp3g20540 Schrenkiella parvula HOM05D001460 ORTHO05D001337 2.9e-06 56.2 111 37.8
BcaB03g14648 Brassica carinata HOM05D001460 ORTHO05D001337 3.7e-06 55.8 111 36.9
A01p22980 Brassica napus HOM05D001460 ORTHO05D001337 3.7e-06 55.8 111 37.8
CDE05G2285 Ceratophyllum demersum HOM05D001460 ORTHO05D001337 3.7e-06 55.8 112 36.6
CDE05G2884 Ceratophyllum demersum HOM05D001460 ORTHO05D001337 3.7e-06 55.8 100 38.0
DCAR_002366 Daucus carota HOM05D001460 ORTHO05D001337 3.7e-06 55.8 142 33.8
FvH4_2g20430 Fragaria vesca HOM05D001460 ORTHO05D001337 3.7e-06 55.8 113 34.5
FAN15G2435 Fragaria x ananassa HOM05D001460 ORTHO05D001337 3.7e-06 55.8 113 34.5
FAN24G2387 Fragaria x ananassa HOM05D001460 ORTHO05D001337 3.7e-06 55.8 113 34.5
HanXRQChr03g0083901 Helianthus annuus HOM05D001460 ORTHO05D001337 3.7e-06 55.8 112 34.8
MBI11_g30648_MAGBIO Magnolia biondii HOM05D001460 ORTHO05D001337 3.7e-06 55.8 123 33.3
Prupe.1G021600 Prunus persica HOM05D001460 ORTHO05D001337 3.7e-06 55.8 112 33.9
Prupe.1G021800 Prunus persica HOM05D001460 ORTHO05D001337 3.7e-06 55.8 111 35.1
SGA_v2.0_scaffold353G49717 Striga asiatica HOM05D001460 ORTHO05D001337 3.7e-06 55.8 112 35.7
Ah.12g058830 Amaranthus hybridus HOM05D001460 ORTHO05D001337 4.9e-06 55.5 112 36.6
BcaC09g50140 Brassica carinata HOM05D001460 ORTHO05D001337 4.9e-06 55.5 111 37.8
C01p28420 Brassica napus HOM05D001460 ORTHO05D001337 4.9e-06 55.5 111 37.8
BolC1t02785H Brassica oleracea HOM05D001460 ORTHO05D001337 4.9e-06 55.5 111 37.8
Carub.0007s2749 Capsella rubella HOM05D001460 ORTHO05D001337 4.9e-06 55.5 111 37.8
Carub.0007s2750 Capsella rubella HOM05D001460 ORTHO05D001337 4.9e-06 55.5 111 36.9
Gohir.D09G221400 Gossypium hirsutum HOM05D001460 ORTHO05D001337 4.9e-06 55.5 111 36.0
Gorai.006G242600 Gossypium raimondii HOM05D001460 ORTHO05D001337 4.9e-06 55.5 111 36.0
HanXRQChr03g0083921 Helianthus annuus HOM05D001460 ORTHO05D001337 4.9e-06 55.5 112 33.9
MD16G1200000 Malus domestica HOM05D001460 ORTHO05D001337 4.9e-06 55.5 107 36.4
PRCOL_00006120 Prasinoderma coloniale HOM05D001460 ORTHO05D001337 4.9e-06 55.5 128 31.2
SEGI_03419 Sequoiadendron giganteum HOM05D001460 ORTHO05D001337 4.9e-06 55.5 112 33.9
Atru.chr4.2361 Acer truncatum HOM05D001460 ORTHO05D001337 6.4e-06 55.1 111 37.8
BcaNung00346 Brassica carinata HOM05D001460 ORTHO05D001337 6.4e-06 55.1 111 36.9
Carub.0003s2297 Capsella rubella HOM05D001460 ORTHO05D001337 6.4e-06 55.1 111 36.9
CiPaw.02G120600 Carya illinoinensis HOM05D001460 ORTHO05D001337 6.4e-06 55.1 111 37.8
Gohir.A09G219200 Gossypium hirsutum HOM05D001460 ORTHO05D001337 6.4e-06 55.1 111 36.0
Lsat_1_v5_gn_6_76441 Lactuca sativa HOM05D001460 ORTHO05D001337 6.4e-06 55.1 112 33.9
Lj3A726T24 Lonicera japonica HOM05D001460 ORTHO05D001337 6.4e-06 55.1 118 34.7
Lj3P727T10 Lonicera japonica HOM05D001460 ORTHO05D001337 6.4e-06 55.1 118 34.7
Mapoly0041s0143 Marchantia polymorpha HOM05D001460 ORTHO05D001337 6.4e-06 55.1 128 31.2
QL06p000916 Quercus lobata HOM05D001460 ORTHO05D001337 6.4e-06 55.1 111 36.0
QL06p001398 Quercus lobata HOM05D001460 ORTHO05D001337 6.4e-06 55.1 111 36.0
SEGI_36110 Sequoiadendron giganteum HOM05D001460 ORTHO05D001337 6.4e-06 55.1 130 32.3
AT3G22840 Arabidopsis thaliana HOM05D001460 ORTHO05D001337 8.3e-06 54.7 111 36.9
AT4G14690 Arabidopsis thaliana HOM05D001460 ORTHO05D001337 8.3e-06 54.7 111 37.8
BraA01t02211Z Brassica rapa HOM05D001460 ORTHO05D001337 8.3e-06 54.7 111 37.8
CSS0010865 Camellia sinensis var. sinensis HOM05D001460 ORTHO05D001337 8.3e-06 54.7 112 35.7
Thhalv10026318m.g Eutrema salsugineum HOM05D001460 ORTHO05D001337 8.3e-06 54.7 111 37.8
Mapoly0041s0138 Marchantia polymorpha HOM05D001460 ORTHO05D001337 8.3e-06 54.7 128 31.2
Mapoly0041s0139 Marchantia polymorpha HOM05D001460 ORTHO05D001337 8.3e-06 54.7 128 31.2
Mapoly0041s0141 Marchantia polymorpha HOM05D001460 ORTHO05D001337 8.3e-06 54.7 128 31.2
Mapoly0041s0142 Marchantia polymorpha HOM05D001460 ORTHO05D001337 8.3e-06 54.7 128 31.2
Os07g0178700 Oryza sativa ssp. japonica HOM05D001460 ORTHO05D001337 8.3e-06 54.7 172 33.1
PSO017G0271 Papaver somniferum HOM05D001460 ORTHO05D001337 8.3e-06 54.7 168 33.3
PSO017G1429 Papaver somniferum HOM05D001460 ORTHO05D001337 8.3e-06 54.7 112 35.7
Prupe.1G021700 Prunus persica HOM05D001460 ORTHO05D001337 8.3e-06 54.7 112 33.9
Sopen09g031550 Solanum pennellii HOM05D001460 ORTHO05D001337 8.3e-06 54.7 142 33.8
TWI09G0677 Tripterygium wilfordii HOM05D001460 ORTHO05D001337 8.3e-06 54.7 111 36.9
Zm00001eb301260 Zea mays HOM05D001460 ORTHO05D001337 8.3e-06 54.7 160 30.6


User provided reference genes

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