Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 2.1e-120 435.6 208 100.0
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 6.2e-24 115.2 164 39.0
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 1.8e-23 113.6 162 40.7
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.8e-23 113.6 163 39.9
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 2.4e-23 113.2 163 42.3
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 2.4e-23 113.2 163 39.9
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 4.0e-23 112.5 163 39.9
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 6.9e-23 111.7 163 38.7
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 1.2e-22 110.9 153 42.5
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 1.5e-22 110.5 163 41.7
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 3.4e-22 109.4 163 42.3
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 3.4e-22 109.4 163 42.3
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 3.4e-22 109.4 163 42.3
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 4.4e-22 109.0 153 42.5
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 4.4e-22 109.0 163 40.5
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 4.4e-22 109.0 163 41.1
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 5.8e-22 108.6 162 39.5
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 5.8e-22 108.6 164 40.9
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 5.8e-22 108.6 162 40.1
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 9.9e-22 107.8 163 39.9
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 1.3e-21 107.5 163 39.9
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 1.3e-21 107.5 162 39.5
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 1.7e-21 107.1 163 38.0
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 2.2e-21 106.7 163 39.9
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 2.2e-21 106.7 163 41.1
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 2.9e-21 106.3 162 39.5
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 3.8e-21 105.9 174 39.1
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 6.4e-21 105.1 163 39.3
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 6.4e-21 105.1 163 39.3
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 6.4e-21 105.1 162 41.4
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 8.4e-21 104.8 163 39.9
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 1.1e-20 104.4 163 39.9
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 1.1e-20 104.4 164 39.6
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 1.4e-20 104.0 163 38.0
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 1.4e-20 104.0 174 39.1
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 1.9e-20 103.6 162 40.7
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 1.9e-20 103.6 162 39.5
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 1.9e-20 103.6 163 38.7
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 2.4e-20 103.2 163 38.7
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 2.4e-20 103.2 190 36.8
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 3.2e-20 102.8 163 39.9
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 3.2e-20 102.8 162 39.5
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 3.2e-20 102.8 163 38.7
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 4.2e-20 102.4 163 37.4
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 4.2e-20 102.4 163 38.7
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 4.2e-20 102.4 163 38.7
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 4.2e-20 102.4 162 38.9
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 4.2e-20 102.4 162 38.9
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.4e-20 102.1 163 39.3
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 5.4e-20 102.1 163 39.3
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 5.4e-20 102.1 163 38.7
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 7.1e-20 101.7 163 39.3
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 7.1e-20 101.7 163 38.7
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 7.1e-20 101.7 163 38.7
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 9.3e-20 101.3 162 38.9
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 9.3e-20 101.3 159 40.3
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 9.3e-20 101.3 163 38.0
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 1.2e-19 100.9 165 38.8
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 1.2e-19 100.9 162 40.1
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 1.6e-19 100.5 165 38.2
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.6e-19 100.5 151 39.7
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 2.1e-19 100.1 153 39.2
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 2.1e-19 100.1 163 38.7
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 2.1e-19 100.1 163 39.3
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 2.1e-19 100.1 162 38.9
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 2.7e-19 99.8 162 40.1
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 2.7e-19 99.8 162 40.1
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 2.7e-19 99.8 165 38.2
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 2.7e-19 99.8 147 40.8
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 2.7e-19 99.8 162 38.3
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 2.7e-19 99.8 162 38.9
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 2.7e-19 99.8 167 37.1
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 3.5e-19 99.4 164 39.6
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 3.5e-19 99.4 163 36.8
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 3.5e-19 99.4 165 37.6
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 3.5e-19 99.4 163 39.3
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 4.6e-19 99.0 153 38.6
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 6.0e-19 98.6 153 37.3
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 7.8e-19 98.2 149 39.6
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 1.0e-18 97.8 162 38.3
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 1.3e-18 97.4 153 39.2
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 2.3e-18 96.7 153 37.3
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 6.6e-18 95.1 146 37.0
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 8.7e-18 94.7 147 38.8
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 8.7e-18 94.7 147 38.8
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 1.1e-17 94.4 150 37.3
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 1.5e-17 94.0 153 38.6
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 1.5e-17 94.0 162 37.0
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 2.5e-17 93.2 144 38.9
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 3.3e-17 92.8 144 38.9
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 3.3e-17 92.8 121 41.3
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 4.3e-17 92.4 153 36.6
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 1.3e-16 90.9 167 34.7
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 2.8e-16 89.7 146 37.7
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 2.8e-16 89.7 144 38.2
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.8e-16 89.7 163 35.0
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 4.8e-16 89.0 146 38.4
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.1e-15 87.8 95 46.3
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 1.4e-15 87.4 84 47.6
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.4e-15 86.7 97 46.4
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 3.1e-15 86.3 149 36.2
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 4.0e-15 85.9 105 43.8
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.0e-15 85.9 95 45.3
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 4.0e-15 85.9 149 38.3
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.2e-14 84.3 95 43.2
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 4.5e-14 82.4 95 43.2
PRCOL_00006051 Prasinoderma coloniale HOM05D004228 ORTHO05D005137 4.5e-14 82.4 190 32.6
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 7.6e-14 81.6 86 44.2
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 6.4e-13 78.6 158 33.5
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 2.4e-12 76.6 157 32.5
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 2.4e-12 76.6 80 42.5
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 3.2e-12 76.3 156 34.6
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.2e-11 74.3 193 30.1
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.3e-10 70.9 65 50.8
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.8e-10 70.5 82 41.5
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.8e-10 70.5 82 41.5
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.9e-10 69.3 82 41.5
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 3.9e-10 69.3 79 39.2
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 8.7e-10 68.2 65 49.2
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 3.3e-09 66.2 134 29.9
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 2.1e-08 63.5 155 33.5
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-07 61.2 59 47.5
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 1.1e-07 61.2 148 33.1
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 2.0e-06 57.0 67 38.8


User provided reference genes

Program Settings