Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G922 Micromonas commoda HOM05D006557 ORTHO05D008177 8.3e-185 650.2 324 100.0
Sp1g00380 Schrenkiella parvula HOM05D006557 ORTHO05D008177 3.9e-25 119.8 272 32.4
Thhalv10007294m.g Eutrema salsugineum HOM05D006557 ORTHO05D008177 1.1e-24 118.2 277 33.2
BolC8t52906H Brassica oleracea HOM05D006557 ORTHO05D008177 1.5e-24 117.9 297 31.3
Cre07.g321200 Chlamydomonas reinhardtii HOM05D006557 ORTHO05D008177 3.3e-24 116.7 330 29.7
AT1G01920 Arabidopsis thaliana HOM05D006557 ORTHO05D008177 2.2e-23 114.0 285 31.2
Oeu058605.1 Olea europaea HOM05D006557 ORTHO05D008177 1.4e-22 111.3 291 29.2
SMO165G0089 Selaginella moellendorffii HOM05D006557 ORTHO05D008177 1.4e-22 111.3 270 31.9
AUR62033372 Chenopodium quinoa HOM05D006557 ORTHO05D008177 2.4e-22 110.5 267 30.7
AL1G10410 Arabidopsis lyrata HOM05D006557 ORTHO05D008177 3.1e-22 110.2 289 30.8
Zm00001eb269430 Zea mays HOM05D006557 ORTHO05D008177 4.1e-22 109.8 274 30.7
Carub.0001s0032 Capsella rubella HOM05D006557 ORTHO05D008177 5.3e-22 109.4 287 31.4
C08p53930 Brassica napus HOM05D006557 ORTHO05D008177 6.9e-22 109.0 297 30.3
Migut.B01677 Erythranthe guttata HOM05D006557 ORTHO05D008177 6.9e-22 109.0 286 29.0
Eucgr.E00220 Eucalyptus grandis HOM05D006557 ORTHO05D008177 2.6e-21 107.1 272 30.9
BraA09t42268Z Brassica rapa HOM05D006557 ORTHO05D008177 3.4e-21 106.7 285 30.2
CARHR000440 Cardamine hirsuta HOM05D006557 ORTHO05D008177 3.4e-21 106.7 287 30.3
ECA236G4623 Erigeron canadensis HOM05D006557 ORTHO05D008177 3.4e-21 106.7 271 30.3
arahy.Tifrunner.gnm1.ann1.P0RXA9 Arachis hypogaea HOM05D006557 ORTHO05D008177 4.5e-21 106.3 270 30.4
Cc02_g37160 Coffea canephora HOM05D006557 ORTHO05D008177 4.5e-21 106.3 285 29.8
MSTRG.17229 Avicennia marina HOM05D006557 ORTHO05D008177 5.9e-21 105.9 293 29.4
Glyma.18G228300 Glycine max HOM05D006557 ORTHO05D008177 7.7e-21 105.5 270 31.5
SalBow3G2355 Salvia bowleyana HOM05D006557 ORTHO05D008177 1.3e-20 104.8 282 30.5
CAN.G170.58 Capsicum annuum HOM05D006557 ORTHO05D008177 1.7e-20 104.4 291 30.2
Glyma.09G263800 Glycine max HOM05D006557 ORTHO05D008177 3.8e-20 103.2 270 30.7
HanXRQChr04g0121771 Helianthus annuus HOM05D006557 ORTHO05D008177 5.0e-20 102.8 318 28.3
Lj1g0000530 Lotus japonicus HOM05D006557 ORTHO05D008177 5.0e-20 102.8 270 30.7
Aa31LG1G11240 Aethionema arabicum HOM05D006557 ORTHO05D008177 1.1e-19 101.7 307 28.7
Lsat_1_v5_gn_7_8181 Lactuca sativa HOM05D006557 ORTHO05D008177 1.4e-19 101.3 274 29.2
Aqoxy7G00469 Aquilegia oxysepala HOM05D006557 ORTHO05D008177 1.9e-19 100.9 275 29.5
Pp3c20_15200 Physcomitrium patens HOM05D006557 ORTHO05D008177 1.9e-19 100.9 349 26.6
EL10Ac1g00969 Beta vulgaris HOM05D006557 ORTHO05D008177 2.5e-19 100.5 273 30.8
PGR042G0062 Punica granatum HOM05D006557 ORTHO05D008177 3.2e-19 100.1 315 27.6
CsaV3_6G041250 Cucumis sativus L. HOM05D006557 ORTHO05D008177 4.2e-19 99.8 294 27.6
TWI23G0976 Tripterygium wilfordii HOM05D006557 ORTHO05D008177 4.2e-19 99.8 288 28.5
CDE11G1252 Ceratophyllum demersum HOM05D006557 ORTHO05D008177 5.5e-19 99.4 285 29.5
DCAR_008582 Daucus carota HOM05D006557 ORTHO05D008177 5.5e-19 99.4 283 28.3
AUR62004285 Chenopodium quinoa HOM05D006557 ORTHO05D008177 7.2e-19 99.0 237 30.8
MELO3C024600.2 Cucumis melo HOM05D006557 ORTHO05D008177 7.2e-19 99.0 299 28.8
QL08p050821 Quercus lobata HOM05D006557 ORTHO05D008177 1.6e-18 97.8 295 28.5
Lalb_Chr01g0021061 Lupinus albus HOM05D006557 ORTHO05D008177 2.1e-18 97.4 281 29.2
Nitab4.5_0006706g0040 Nicotiana tabacum HOM05D006557 ORTHO05D008177 2.1e-18 97.4 265 31.7
Phvul.008G069900 Phaseolus vulgaris HOM05D006557 ORTHO05D008177 3.6e-18 96.7 272 29.4
CANSAT56G3931 Cannabis sativa HOM05D006557 ORTHO05D008177 4.6e-18 96.3 288 28.5
Os06g0127200 Oryza sativa ssp. japonica HOM05D006557 ORTHO05D008177 4.6e-18 96.3 278 29.1
PGSC0003DMG400000131 Solanum tuberosum HOM05D006557 ORTHO05D008177 4.6e-18 96.3 293 27.6
Sed0001202 Sechium edule HOM05D006557 ORTHO05D008177 6.1e-18 95.9 294 29.3
Solyc01g091860.4 Solanum lycopersicum HOM05D006557 ORTHO05D008177 6.1e-18 95.9 293 27.6
Sopen01g037630 Solanum pennellii HOM05D006557 ORTHO05D008177 6.1e-18 95.9 293 27.6
unitig_8.g3814 Utricularia gibba HOM05D006557 ORTHO05D008177 6.1e-18 95.9 294 27.2
Dinv43750 Davidia involucrata HOM05D006557 ORTHO05D008177 1.0e-17 95.1 316 27.8
Nn6g34278 Nelumbo nucifera HOM05D006557 ORTHO05D008177 1.0e-17 95.1 314 27.7
PSO478G0993 Papaver somniferum HOM05D006557 ORTHO05D008177 1.0e-17 95.1 306 27.5
Potri.014G077700 Populus trichocarpa HOM05D006557 ORTHO05D008177 1.0e-17 95.1 284 27.5
Hund27329 Selenicereus undatus HOM05D006557 ORTHO05D008177 1.0e-17 95.1 291 27.5
GSVIVG01026363001 Vitis vinifera HOM05D006557 ORTHO05D008177 1.0e-17 95.1 296 27.4
AagrBONN_evm.TU.Sc2ySwM_228.962 Anthoceros agrestis HOM05D006557 ORTHO05D008177 1.4e-17 94.7 329 25.8
Nitab4.5_0009025g0010 Nicotiana tabacum HOM05D006557 ORTHO05D008177 1.8e-17 94.4 261 31.8
RcHm_v2.0_Chr1g0352061 Rosa chinensis HOM05D006557 ORTHO05D008177 1.8e-17 94.4 285 28.4
TPR.G37774 Trifolium pratense HOM05D006557 ORTHO05D008177 1.8e-17 94.4 270 28.5
arahy.Tifrunner.gnm1.ann1.1L2ERA Arachis hypogaea HOM05D006557 ORTHO05D008177 2.3e-17 94.0 256 32.4
Cfa004174 Carpinus fangiana HOM05D006557 ORTHO05D008177 2.3e-17 94.0 296 27.4
MD02G1195100 Malus domestica HOM05D006557 ORTHO05D008177 2.3e-17 94.0 307 28.3
Psat3g112120 Pisum sativum HOM05D006557 ORTHO05D008177 2.3e-17 94.0 270 29.3
Atru.chr5.390 Acer truncatum HOM05D006557 ORTHO05D008177 3.0e-17 93.6 293 27.3
COL.COLO4_12633 Corchorus olitorius HOM05D006557 ORTHO05D008177 3.0e-17 93.6 297 28.3
Medtr7g076590 Medicago truncatula HOM05D006557 ORTHO05D008177 3.0e-17 93.6 270 29.3
CiPaw.01G052200 Carya illinoinensis HOM05D006557 ORTHO05D008177 5.1e-17 92.8 294 27.9
Manes.01G262900 Manihot esculenta HOM05D006557 ORTHO05D008177 5.1e-17 92.8 290 26.9
Thecc.01G369600 Theobroma cacao HOM05D006557 ORTHO05D008177 5.1e-17 92.8 298 27.2
HPP92_025368 Vanilla planifolia HOM05D006557 ORTHO05D008177 5.1e-17 92.8 292 28.1
FvH4_7g12930 Fragaria vesca HOM05D006557 ORTHO05D008177 6.7e-17 92.4 296 27.7
FAN01G0615 Fragaria x ananassa HOM05D006557 ORTHO05D008177 6.7e-17 92.4 296 28.0
ATR0757G115 Amborella trichopoda HOM05D006557 ORTHO05D008177 8.8e-17 92.0 313 29.7
Gohir.A07G144300 Gossypium hirsutum HOM05D006557 ORTHO05D008177 8.8e-17 92.0 297 27.6
Peaxi162Scf00021g00314 Petunia axillaris HOM05D006557 ORTHO05D008177 8.8e-17 92.0 260 30.0
Gohir.D07G150201 Gossypium hirsutum HOM05D006557 ORTHO05D008177 1.1e-16 91.7 293 27.0
Gorai.001G172000 Gossypium raimondii HOM05D006557 ORTHO05D008177 1.1e-16 91.7 293 27.0
Prupe.2G153600 Prunus persica HOM05D006557 ORTHO05D008177 2.5e-16 90.5 293 27.0
Atru.chr5.396 Acer truncatum HOM05D006557 ORTHO05D008177 3.3e-16 90.1 293 27.0
Dinv32417 Davidia involucrata HOM05D006557 ORTHO05D008177 3.3e-16 90.1 298 25.5
FAN06G2259 Fragaria x ananassa HOM05D006557 ORTHO05D008177 4.3e-16 89.7 303 27.1
PRCOL_00004732 Prasinoderma coloniale HOM05D006557 ORTHO05D008177 5.7e-16 89.4 242 33.1
TAR375G0852 Trochodendron aralioides HOM05D006557 ORTHO05D008177 7.4e-16 89.0 315 27.9
Actinidia33449 Actinidia chinensis HOM05D006557 ORTHO05D008177 1.3e-15 88.2 293 25.9
Ciclev10019481m.g Citrus clementina HOM05D006557 ORTHO05D008177 1.3e-15 88.2 304 26.3
CSS0001854 Camellia sinensis var. sinensis HOM05D006557 ORTHO05D008177 1.7e-15 87.8 291 26.8
Sc02g0002240 Simmondsia chinensis HOM05D006557 ORTHO05D008177 2.8e-15 87.0 283 29.3
ClCG01G015140 Citrullus lanatus HOM05D006557 ORTHO05D008177 2.4e-14 84.0 283 28.3
MBI04_g40842_MAGBIO Magnolia biondii HOM05D006557 ORTHO05D008177 2.4e-14 84.0 263 29.3
vmacro04846 Vaccinium macrocarpon HOM05D006557 ORTHO05D008177 4.1e-14 83.2 300 26.0
Lj9A576T36 Lonicera japonica HOM05D006557 ORTHO05D008177 9.1e-14 82.0 333 26.1
FAN10G0459 Fragaria x ananassa HOM05D006557 ORTHO05D008177 2.0e-13 80.9 268 28.4
FAN10G2465 Fragaria x ananassa HOM05D006557 ORTHO05D008177 4.5e-13 79.7 268 28.7
Mapoly0052s0068 Marchantia polymorpha HOM05D006557 ORTHO05D008177 7.7e-13 79.0 343 23.0
FAN03G1058 Fragaria x ananassa HOM05D006557 ORTHO05D008177 7.2e-11 72.4 346 25.1
CBR_g54105 Chara braunii HOM05D006557 ORTHO05D008177 1.6e-10 71.2 133 31.6
VMungo1383G0754 Vigna mungo HOM05D006557 ORTHO05D008177 3.6e-10 70.1 224 30.4
Duzib133G0555 Durio zibethinus HOM05D006557 ORTHO05D008177 4.7e-10 69.7 274 26.6
Rhsim01G0154800 Rhododendron simsii HOM05D006557 ORTHO05D008177 3.9e-09 66.6 311 24.4
MCO01G414 Micromonas commoda HOM05D004224 ORTHO05D048806 5.1e-09 66.2 217 30.0
MCO07G533 Micromonas commoda HOM05D005861 ORTHO05D007151 2.0e-08 64.3 181 29.8
PRCOL_00004140 Prasinoderma coloniale HOM05D005252 ORTHO05D006788 2.6e-08 63.9 230 30.0
ATR0564G531 Amborella trichopoda HOM05D005456 ORTHO05D006805 4.4e-08 63.2 230 26.1
AagrBONN_evm.TU.Sc2ySwM_228.1925 Anthoceros agrestis HOM05D004224 ORTHO05D016538 5.7e-08 62.8 220 26.4
MCO12G473 Micromonas commoda HOM05D005456 ORTHO05D006805 5.7e-08 62.8 240 30.4
Os09g0411650 Oryza sativa ssp. japonica HOM05D005456 ORTHO05D006805 9.7e-08 62.0 236 26.7
Cre10.g429200 Chlamydomonas reinhardtii HOM05D005416 ORTHO05D016538 2.8e-07 60.5 282 26.2
Haze_15235 Corylus avellana HOM05D006557 ORTHO05D008177 3.7e-07 60.1 97 39.2
Eucgr.B01036 Eucalyptus grandis HOM05D005456 ORTHO05D006805 1.8e-06 57.8 225 27.6
Cre08.g368700 Chlamydomonas reinhardtii HOM05D005416 ORTHO05D020352 3.1e-06 57.0 320 25.6
Eucgr.B01038 Eucalyptus grandis HOM05D005456 ORTHO05D006805 7.0e-06 55.8 228 26.8
Sc21g0000480 Simmondsia chinensis HOM05D004224 ORTHO05D006437 7.0e-06 55.8 184 29.3


User provided reference genes

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