Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 3.0e-241 838.2 446 100.0
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 1.0e-23 115.5 402 28.1
Cre02.g095086 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 1.9e-22 111.3 234 33.8
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 8.4e-18 95.9 331 27.5
Cre02.g095085 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 8.6e-15 85.9 281 27.4
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 5.6e-14 83.2 361 25.8
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 9.6e-14 82.4 351 26.8
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 3.6e-13 80.5 378 27.2
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 8.1e-13 79.3 365 25.5
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.4e-12 78.6 384 26.6
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 6.8e-12 76.3 353 27.5
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 8.9e-12 75.9 392 27.6
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 2.6e-11 74.3 364 26.9
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.6e-11 74.3 338 26.6
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.4e-11 73.6 373 25.7
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 4.4e-11 73.6 342 26.6
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 9.9e-11 72.4 340 26.2
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.3e-10 72.0 353 25.2
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.7e-10 71.6 356 26.1
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 2.2e-10 71.2 360 25.8
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-10 70.5 217 28.6
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 4.9e-10 70.1 353 26.3
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 8.4e-10 69.3 337 26.7
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 1.4e-09 68.6 354 25.7
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.4e-09 68.6 220 30.5
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 3.2e-09 67.4 422 24.6
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 4.2e-09 67.0 221 27.1
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 4.2e-09 67.0 311 24.8
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 4.2e-09 67.0 341 25.5
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 4.2e-09 67.0 351 24.8
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 4.2e-09 67.0 331 25.4
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 5.4e-09 66.6 360 25.3
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 5.4e-09 66.6 337 24.3
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 5.4e-09 66.6 344 25.0
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 5.4e-09 66.6 348 25.3
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 7.1e-09 66.2 370 25.4
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 7.1e-09 66.2 385 26.2
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 7.1e-09 66.2 336 25.6
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 9.3e-09 65.9 332 25.9
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 1.2e-08 65.5 222 28.8
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.2e-08 65.5 411 24.8
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 1.2e-08 65.5 343 24.2
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 1.2e-08 65.5 341 25.5
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 1.2e-08 65.5 336 23.5
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 1.2e-08 65.5 195 30.3
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 1.6e-08 65.1 331 24.8
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 1.6e-08 65.1 347 24.2
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.6e-08 65.1 340 25.3
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 2.1e-08 64.7 362 26.0
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 2.1e-08 64.7 371 25.6
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 2.7e-08 64.3 329 26.4
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 2.7e-08 64.3 426 24.9
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 3.5e-08 63.9 334 23.1
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 3.5e-08 63.9 357 25.5
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 3.5e-08 63.9 375 25.3
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 3.5e-08 63.9 348 24.4
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 3.5e-08 63.9 400 25.0
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 4.6e-08 63.5 376 25.0
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 4.6e-08 63.5 359 23.4
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 4.6e-08 63.5 422 26.1
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 6.0e-08 63.2 334 26.3
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 6.0e-08 63.2 415 26.0
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 7.8e-08 62.8 228 28.5
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 7.8e-08 62.8 371 25.6
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.0e-07 62.4 404 24.5
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.3e-07 62.0 345 24.6
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.7e-07 61.6 358 24.3
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 2.3e-07 61.2 228 29.4
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 2.3e-07 61.2 342 23.4
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 3.0e-07 60.8 366 25.1
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 3.9e-07 60.5 375 24.3
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 3.9e-07 60.5 372 26.6
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 3.9e-07 60.5 413 25.4
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 5.1e-07 60.1 333 23.7
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 5.1e-07 60.1 199 29.1
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 8.7e-07 59.3 372 25.3
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 8.7e-07 59.3 377 24.7
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 8.7e-07 59.3 181 29.3
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.1e-06 58.9 372 22.6
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 1.1e-06 58.9 377 24.7
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 1.1e-06 58.9 354 22.9
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 1.5e-06 58.5 336 22.9
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 1.5e-06 58.5 336 22.9
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.5e-06 58.5 400 24.0
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.5e-06 58.5 224 28.1
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 1.9e-06 58.2 380 22.9
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 1.9e-06 58.2 380 22.9
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.9e-06 58.2 364 23.6
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 1.9e-06 58.2 380 22.9
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 2.5e-06 57.8 195 29.2
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 3.3e-06 57.4 362 23.5
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 3.3e-06 57.4 267 27.3
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 4.3e-06 57.0 227 26.4
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 4.3e-06 57.0 242 25.2
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 5.6e-06 56.6 239 27.6
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 7.3e-06 56.2 204 27.0
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 7.3e-06 56.2 236 25.4
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.6e-06 55.8 82 42.7
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 9.6e-06 55.8 368 23.6
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 9.6e-06 55.8 398 25.1


User provided reference genes

Program Settings