Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 2.7e-121 438.7 230 100.0
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 2.4e-21 106.7 168 38.1
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.0e-19 101.3 158 41.1
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.3e-19 100.9 182 35.7
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.7e-19 100.5 178 38.8
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.7e-19 100.5 178 38.8
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 3.0e-19 99.8 156 40.4
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.0e-19 99.8 156 41.0
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 3.0e-19 99.8 203 35.5
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 3.9e-19 99.4 169 38.5
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.1e-18 97.8 183 36.1
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.5e-18 97.4 179 36.9
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.5e-18 97.4 208 36.1
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.9e-18 97.1 156 39.1
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.9e-18 97.1 154 39.6
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.9e-18 97.1 150 40.7
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.5e-18 96.7 148 39.9
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 3.3e-18 96.3 154 38.3
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 3.3e-18 96.3 148 39.9
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.3e-18 95.9 156 38.5
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 4.3e-18 95.9 207 33.3
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 4.3e-18 95.9 166 38.0
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 4.3e-18 95.9 156 38.5
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 4.3e-18 95.9 146 39.7
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 5.6e-18 95.5 154 39.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 5.6e-18 95.5 154 39.0
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 5.6e-18 95.5 136 40.4
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 5.6e-18 95.5 156 38.5
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 7.3e-18 95.1 156 37.8
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 7.3e-18 95.1 148 38.5
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 7.3e-18 95.1 148 38.5
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 7.3e-18 95.1 196 31.6
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 7.3e-18 95.1 158 36.1
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 7.3e-18 95.1 178 37.1
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 9.6e-18 94.7 150 40.0
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 9.6e-18 94.7 154 39.0
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 9.6e-18 94.7 156 39.1
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.3e-17 94.4 146 41.8
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.3e-17 94.4 166 38.6
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 1.3e-17 94.4 159 36.5
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.3e-17 94.4 179 35.8
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.3e-17 94.4 159 36.5
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.3e-17 94.4 148 38.5
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.3e-17 94.4 159 36.5
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.6e-17 94.0 146 39.7
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.6e-17 94.0 169 37.3
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.6e-17 94.0 182 36.3
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.6e-17 94.0 206 33.0
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.1e-17 93.6 148 39.2
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.1e-17 93.6 148 39.2
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 2.1e-17 93.6 156 37.2
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.1e-17 93.6 208 36.1
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 2.8e-17 93.2 177 34.5
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.8e-17 93.2 206 35.0
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 2.8e-17 93.2 213 32.4
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 2.8e-17 93.2 159 35.8
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.8e-17 93.2 148 37.8
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.8e-17 93.2 148 37.8
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 2.8e-17 93.2 154 37.7
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.6e-17 92.8 148 37.8
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 3.6e-17 92.8 146 38.4
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 3.6e-17 92.8 175 34.9
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 3.6e-17 92.8 150 38.0
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 3.6e-17 92.8 155 39.4
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 3.6e-17 92.8 156 36.5
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 4.8e-17 92.4 151 37.1
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 4.8e-17 92.4 176 39.2
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 4.8e-17 92.4 146 39.7
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 4.8e-17 92.4 146 39.7
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.8e-17 92.4 213 32.9
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.8e-17 92.4 213 32.9
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 4.8e-17 92.4 148 38.5
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 4.8e-17 92.4 159 35.8
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 4.8e-17 92.4 148 39.2
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 4.8e-17 92.4 174 35.1
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 6.2e-17 92.0 148 38.5
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 6.2e-17 92.0 156 35.3
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 6.2e-17 92.0 159 36.5
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 6.2e-17 92.0 147 39.5
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 8.1e-17 91.7 159 36.5
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.1e-16 91.3 146 39.7
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.1e-16 91.3 146 39.7
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.1e-16 91.3 147 38.8
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.1e-16 91.3 147 38.8
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.1e-16 91.3 159 35.8
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.4e-16 90.9 146 36.3
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 2.4e-16 90.1 146 39.7
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.4e-16 90.1 210 32.9
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.4e-16 90.1 146 38.4
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 2.4e-16 90.1 147 38.8
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 2.4e-16 90.1 173 34.1
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 3.1e-16 89.7 210 32.9
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 3.1e-16 89.7 155 37.4
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 3.1e-16 89.7 155 37.4
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.1e-16 89.7 147 38.8
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 3.1e-16 89.7 170 34.1
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 4.0e-16 89.4 153 37.3
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 4.0e-16 89.4 146 39.0
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.3e-16 89.0 147 38.8
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 5.3e-16 89.0 148 37.8
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 6.9e-16 88.6 146 36.3
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 6.9e-16 88.6 159 35.8
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 9.0e-16 88.2 178 36.0
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 9.0e-16 88.2 146 37.7
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 9.0e-16 88.2 149 38.3
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.2e-15 87.8 222 32.9
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.5e-15 87.4 216 31.5
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.5e-15 87.4 214 30.8
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.0e-15 87.0 152 36.2
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 2.0e-15 87.0 151 37.1
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.0e-15 87.0 177 33.9
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 2.6e-15 86.7 185 35.7
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.5e-15 85.9 136 39.0
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 4.5e-15 85.9 159 35.8
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 7.6e-15 85.1 177 33.9
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 9.9e-15 84.7 159 35.8
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 3.8e-14 82.8 179 36.3
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 8.4e-14 81.6 144 35.4
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 8.4e-14 81.6 139 34.5
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.1e-13 81.3 169 33.1
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.1e-13 81.3 124 38.7
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 7.1e-13 78.6 177 33.3
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 9.3e-13 78.2 124 38.7
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 2.7e-12 76.6 122 37.7
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 6.0e-12 75.5 152 32.2
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 6.0e-12 75.5 147 32.7
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.0e-11 74.7 124 36.3
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.0e-11 73.2 122 36.1
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.9e-11 72.8 147 32.0
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.3e-10 69.3 124 33.9
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.6e-09 67.4 139 31.7
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.4e-08 64.3 121 34.7
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.0e-08 62.8 146 31.5
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 5.8e-07 58.9 117 31.6
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.7e-06 57.4 94 38.3
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.9e-06 56.6 99 36.4
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 3.8e-06 56.2 111 34.2


User provided reference genes

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